BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09795.1
Length=1516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471081 jgi|Araly1|471081|fgenesh2_kg.1__1035__AT1G09795.1 2087 0.0
Ahg925185 jgi|Araly1|925185|scaffold_200746.1 1101 0.0
> Ahg471081 jgi|Araly1|471081|fgenesh2_kg.1__1035__AT1G09795.1
Length=1392
Score = 2087 bits (1130), Expect = 0.0
Identities = 1330/1421 (94%), Gaps = 35/1421 (2%)
Strand=Plus/Plus
Query 2 TGCAATTATATCCGCCGACCATCTCTCTCCTCCGTCACCGAGGGAGAGCAACCATGCCAA 61
|||||| |||||||||||||| ||||| || | | ||| ||||||||||||| |||
Sbjct 1 TGCAATAATATCCGCCGACCA--TCTCT-CT-C-T---CGA--GAGAGCAACCATGTCAA 50
Query 62 TCTCAATTCCCCTTAACGCCACTCTACAATACTCGtctccttcttcttcttcttcttctt 121
||||||||||||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 51 TCTCAATTCCCCTCAACACCACTCTACAATACTCG---------TCTTCTTCTTCTTCTT 101
Query 122 cttctctcgtaccttcttcccctcttttctctccgattc-cttcAACCACTGTTTCCCTT 180
| |||| | ||||||||| | |||| | |||||| | || |||||||| |||||||| ||
Sbjct 102 C-TCTC-C-TACCTTCTTTCTCTCTCTCCTCTCCTA-TCACTTCAACCGCTGTTTCCGTT 157
Query 181 ACCGGAATTCGCCAGCGATGCCTCAGGATGGTCACTTCTTGCGTCTCCAACGCTCAGAAA 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 ACCGGAATTCGGCAGCGATGCCTCAGGATGGTCACTTCTTGCGTCTCCAACGCTCAGAAA 217
Query 241 TCCGTCCTGAATGGTGCCACCGATTCCGTCTCTGTCGTCGGGCGGGAGCAGATTCGTCTT 300
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 218 TCCGTCCTGAATGGTGCCACCGACGCCGTCTCTATCGTCGGGCGGGAGCAGATTCGTCTT 277
Query 301 GGTCTTCCTAGCAAAGGACGCATGGCCGCCGATTCGCTGGATCTTCTCAAGGATTGCCAA 360
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 278 GGTCTTCCTAGCAAGGGACGCATGGCCGCCGATTCTCTGGATCTTCTCAAGGATTGCCAA 337
Query 361 TTGTTTGTCAAACAAGTCAATCCACGACAATATGTTGCTCAAATTCCTCAGTTACCAAAT 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 338 TTGTTTGTCAAACAAGTCAATCCACGGCAATATGTTGCTCAAATTCCTCAGTTACCAAAT 397
Query 421 ACTGAAGTTTGGTTTCAACGACCAAAAGACATTGTCAGAAAGTTGCTATCAGGAGATCTG 480
||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 398 ACTGAGGTTTGGTTTCAACGTCCAAAAGACATTGTCAGGAAGTTGCTCTCAGGAGATCTT 457
Query 481 GATCTAGGCATCGTTGGTCTTGACATAGTTGGTGAATTTGGTCAGGGAAATGAAGATCTT 540
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 458 GATTTAGGCATCGTTGGTCTTGACATTGTTGGTGAATTTGGTCAGGGAAATGAAGATCTT 517
Query 541 ATCATTGTCCACGAAGCTCTCAACTTTGGAGATTGTCATCTCTCCCTTGC----CATACC 596
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 518 ATCATTGTCCACGAAGCTCTCAACTTTGGAGA-TGTCATCTCTCCCTTGCGGTACATACC 576
Query 597 CAATTATGGAATATTTGAGAATATAAAATCTCTGAAGGAGCTAGCACAAATGCCTCAATG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 CAATTATGGAATATTTGAGAATATAAAATCTCTGAAGGAGCTAGCACAAATGCCTCAATG 636
Query 657 GACCGAGGAAAGACCTTTACGAGTTGCTACAGGATTCACTTATCTAGGCCCCAAATTTAT 716
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 637 GACTGAGGAAAGACCTTTACGAGTTGCTACAGGATTCACTTATCTAGGCTCCAAATTTAT 696
Query 717 GAAAGACAACGGTATAAAGCATGTGACTTTCTCAACTGCAGATGGAGCCCTAGAGGCAGC 776
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 697 GAAAGAAAACGGTATAAAGCATGTGACTTTTTCAACTGCAGATGGAGCCCTAGAGGCAGC 756
Query 777 GCCTGCGATGGGGATAGCTGATGCCATTTTAGACCTTGTGAGCAGTGGGACAACCCTTAA 836
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 TCCTGCGATGGGGATAGCTGATGCCATTTTAGACCTTGTGAGCAGTGGGACAACCCTTAA 816
Query 837 AGAGAACAACTTAAAAGAAATTGAAGGAGGGGTTGTGCTGGAAAGTCAGGCTGCACTAGT 896
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 817 AGAGAACAACTTAAAAGAGATTGAAGGAGGGGTTGTGCTGGAAAGTCAGGCTGCGCTAGT 876
Query 897 GGCGAGTAGAAGGGCATTGACTGAGAGAAAAGGAGCACTAGAAACAGTGCATGAGATTCT 956
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 GGCGAGCAGAAGGGCATTGACTGAGAGAAAAGGAGCACTAGAAACAGTGCATGAGATTCT 936
Query 957 CGAGAGATTAGAGGCTCATTTGAAGGCAAATGGTCAATTCACTGTGGTTGCAAACATGAG 1016
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 937 CGAGAGATTAGAGGCTCATTTGAAGGCAAATGGGCAATTCACTGTGGTTGCAAACATGAG 996
Query 1017 AGGAACGGATGCTGAAGAAGTGGCTGAACGTGTGAAAACCCAACCATCACTATCAGGATT 1076
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 997 AGGAACGGATGCTGAGGAAGTGGCTGAACGTGTGAAAACCCAACCATCATTATCAGGATT 1056
Query 1077 GCAGGGACCAACAATAAGTCCAGTTTATTGTAAACGAGATGGAAAAGTAACAATTGAGTA 1136
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1057 GCAGGGACCAACAATAAGTCCAGTTTATTGTAAACGAGATGGAAAAGTATCAATTGAGTA 1116
Query 1137 CTATGCCATTGTGATATGTGTACCaaaaaaaGCGCTTTATGAGTCTGTGCAGCAACTGAG 1196
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 1117 CTATGCCATTGTGATATGTGTACCCAAAAAAGCTCTGTATGAGTCTGTGCAGCAACTGAG 1176
Query 1197 AGCGGTGGGAGGAAGTGGGGTACTAGTTTCTCCTGTAACATACATTTTTCATGAGGAGAC 1256
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||||||||||
Sbjct 1177 AGCGGTGGGAGGAAGTGGGGTACTGGTTTCACCTCTAACGTACATTTTTGATGAGGAGAC 1236
Query 1257 TCCCAGATGGAGTCAGCTTCTGAGTAACCTCGGCCTTTGATGCTGCTTCTCAGACATACT 1316
||||||||||||||||||||||||||| || ||| | |||| |||||||||||| ||||
Sbjct 1237 TCCCAGATGGAGTCAGCTTCTGAGTAAACTAGGCATGTGATACTGCTTCTCAGAGATACG 1296
Query 1317 TTGGTTTAGTCAGATGCATTCGTTGGAGGAACTCTTTTGG-TCAAACACTACAATGTCTT 1375
||||||||||||||||||||||| ||||||||||||| || |||||||||||||||| ||
Sbjct 1297 TTGGTTTAGTCAGATGCATTCGTAGGAGGAACTCTTT-GGATCAAACACTACAATGT-TT 1354
Query 1376 TCTTTTTTGGGTTTTATCTTTGTGGATCTTATAGTAGAAAA 1416
| |||||||| ||| |||||| |||||||| ||| ||||||
Sbjct 1355 T-TTTTTTGG-TTT-ATCTTTTTGGATCTTTTAGAAGAAAA 1392
> Ahg925185 jgi|Araly1|925185|scaffold_200746.1
Length=1272
Score = 1101 bits (596), Expect = 0.0
Identities = 890/1034 (86%), Gaps = 11/1034 (1%)
Strand=Plus/Plus
Query 273 TGTCGTCGGGCGGGAGCAGATTCGTCTTGGTCTTCCTAGCAAAGGACGCATGGCCGCCGA 332
|||||| | || || ||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 224 TGTCGTTGAACGAGACCAGATTCGTCTTGGTCTTCCTAGTAAAGGACGTATGGCTGCCGA 283
Query 333 TTCGCTGGATCTTCTCAAGGATTGCCAATTGTTTGTCAAACAAGTCAATCC-ACGACAAT 391
| | | |||||||| ||||| || ||| ||||||| |||||||||||||| | | ||||
Sbjct 284 TGCAATCGATCTTCTTAAGGACTGTCAACTGTTTGTTAAACAAGTCAATCCTA-GGCAAT 342
Query 392 ATGTTGCTCAAATTCCTCAGTTACCAAATACTGAAGTTTGGTTTCAACGACCAAAAGACA 451
||||||| || ||||| ||||||||||| |||||||| ||||||||||| |||||||| |
Sbjct 343 ATGTTGCACAGATTCCCCAGTTACCAAACACTGAAGTCTGGTTTCAACGGCCAAAAGATA 402
Query 452 TTGTCAGAAAGTTGCTATCAGGAGATCTGGATCTAGGCATCGTTGGTCTTGACATAGTTG 511
||||||| ||||| || || |||||| |||||||||| |||||||||||||| | | ||
Sbjct 403 TTGTCAGGAAGTTACTCTCTGGAGATTTGGATCTAGGTATCGTTGGTCTTGATACACTTA 462
Query 512 GTGAATTTGGTCAGGGAAATGAAGATCTTATCATTGTCCACGAAGCTCTCAACTTTGGAG 571
|||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 463 GTGAATATGGTCAGGAAAATGAAGATCTTATCATTGTCCATGAAGCTCTCAACTTTGGAG 522
Query 572 ATTGTCATCTCTCCCTTGCCATACCCAATTATGGAATATTTGAGAATATAAAATCTCTGA 631
| || || || ||| |||| ||||| |||||||| ||||||||||||||||| |||||||
Sbjct 523 ACTGCCACCTATCCATTGCGATACCTAATTATGGGATATTTGAGAATATAAATTCTCTGA 582
Query 632 AGGAGCTAGCACAAATGCCTCAATGGACCGAGGAAAGACCTTTACGAGTT-GCTACAGGA 690
||||||||||||||||||| ||||||| || || ||||| ||||| || ||||| ||
Sbjct 583 AGGAGCTAGCACAAATGCCCCAATGGAGTGAAGAGAGACCCTTACG-CTTAGCTACTGGC 641
Query 691 TTCACTTATCTAGGCCCCAAATTTATGAAAGACAACGGTATAAAGCATGT-GACTTTCTC 749
||||||||||| ||||| |||||||||||||| ||||| ||||||||||| | ||| ||
Sbjct 642 TTCACTTATCTCGGCCCTAAATTTATGAAAGAGAACGGCATAAAGCATGTGGTGTTT-TC 700
Query 750 AACTGCAGATGGAGCCCTAGAGGCAGCGCCTGCGATGGGGATAGCTGATGCCATTTTAGA 809
||||||||| |||||||| |||||||| || |||||||||||||||||||||||||| ||
Sbjct 701 AACTGCAGACGGAGCCCTGGAGGCAGCTCCGGCGATGGGGATAGCTGATGCCATTTTGGA 760
Query 810 CCTTGTGAGCAGTGGGACAACCCTTAAAGAGAACAACTTAAAAGAAATTGAAGGAGGGGT 869
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 761 CCTTGTGAGTAGTGGGACAACACTCAAAGAGAACAACTTAAAAGAAATTGAAGGAGGTGT 820
Query 870 TGTGCTGGAAAGTCAGGCTGCACTAGTGGCGAGTAGAAGGGCATTGACTGAGAGAAAAGG 929
|||||||||||||||||| ||||| ||||| || ||||| |||||||| |||||||||||
Sbjct 821 TGTGCTGGAAAGTCAGGCAGCACTTGTGGCAAGCAGAAGAGCATTGACCGAGAGAAAAGG 880
Query 930 AGCACTAGAA-ACAGTGCATGAGATTCTCGAGAGATTAGAGGCTCATTTGAAGGCAAATG 988
||||||| || ||||| || |||||||| |||||||| ||||| ||| | ||||| |||
Sbjct 881 AGCACTA-AACACAGTACACGAGATTCTTGAGAGATTGGAGGCCCATCTAAAGGCGGATG 939
Query 989 GTCAATTCACTGTGGTTGCAAACATGAGAGGAACG-GATGCTGAAGAAGTGGCTGAACGT 1047
||||||||||||| ||||||||||||||||||| | |||| | ||||||||||| |||
Sbjct 940 GTCAATTCACTGTTGTTGCAAACATGAGAGGAAATAG-TGCTCAGGAAGTGGCTGAGCGT 998
Query 1048 GTGAAAACCCAACCATCACTATCAGGATTGCAGGGACCAACAATAAGTCCAGTTTATTGT 1107
||| | |||||||||| | || ||||||||||||||||||||||| ||||| || ||
Sbjct 999 GTGCTGAGCCAACCATCATTGTCTGGATTGCAGGGACCAACAATAAGCCCAGTGTACAGT 1058
Query 1108 AAACGAGATGGAAAAGTAACAATTGAGTACTATGCCATTGTGATATGTGTACCaaaaaaa 1167
| || | ||||||||||| | |||| ||||||||||||||||| ||||||||||||||
Sbjct 1059 ACACAAAATGGAAAAGTATCGGTTGACTACTATGCCATTGTGATTTGTGTACCAAAAAAG 1118
Query 1168 GCGCTTTATGAGTCTGTGCAGCAACTGAGAGCGGTGGGAGGAAGTGGGGTACTAGTTTCT 1227
|| || || || |||||| |||||||||||||||| ||||| ||||||||| |||||||
Sbjct 1119 GCCCTATACGACTCTGTGAAGCAACTGAGAGCGGTTGGAGGCAGTGGGGTATTAGTTTCA 1178
Query 1228 CCTGTAACATACATTTTTCATGAGGAGACTCCCAGATGGAGTCAGCTTCTGAGTAACCTC 1287
||| | || ||||||||| ||||||| ||||| |||||| ||||||| ||||| || |||
Sbjct 1179 CCTCTGACCTACATTTTTGATGAGGATACTCCAAGATGGGGTCAGCTCCTGAGAAAACTC 1238
Query 1288 GGCCTTTGA-TGCT 1300
|| |||| | ||||
Sbjct 1239 GGGCTTTAAATGCT 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56754465050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5