BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09800.1
Length=1442
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471082 jgi|Araly1|471082|fgenesh2_kg.1__1036__AT1G09800.1 2013 0.0
> Ahg471082 jgi|Araly1|471082|fgenesh2_kg.1__1036__AT1G09800.1
Length=1272
Score = 2013 bits (1090), Expect = 0.0
Identities = 1203/1257 (96%), Gaps = 10/1257 (1%)
Strand=Plus/Plus
Query 28 ACATTGGCACTGAGCTTGAGACGGTGTGAGATATCATAAATCAGTGAGTGAGTGAGTCAT 87
|||||||||||||||||||||| | |||||| |||||||||| || |||||||| | ||
Sbjct 1 ACATTGGCACTGAGCTTGAGAC-G-GTGAGAAATCATAAATC--TGTGTGAGTGA-TAAT 55
Query 88 GTCCGATAATCTGAAGCATCCTCTCGATTGTACAGCTAGTGAGGAATCACTCGAGAGACT 147
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 56 GTCCGATAATCTGAAGCATCCTCTCGATTCTACAGCTAGTGAGGAATCACTCGAGAGACT 115
Query 148 CTCAAAGGTTGCGAGAATCGAGGGATTTAGTGAC---GAAGAATCAGAGGAACAGCAGGG 204
|||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||
Sbjct 116 CTCAAAGGTTGCGAGAATCGAGGGATTTAGTGACGAAGAAGAAGCAGAGGAACAACAAGG 175
Query 205 ATTGGCCGACTTGGAGTCCATGAACCCAGTAAACCCTAGAGTGCAGCGTTACTTGGTTGC 264
||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 176 ATTGGGCGACTCGGAGTCCATGAACCCAGTAAACCCTAGGGTGCAGCGTTACTTGGTTGC 235
Query 265 CATTGAGTACATCGGAACTCGTTTCTCCGGTTCACAACAGCAAGCTAAGGACCGCACCGT 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CATTGAGTACATCGGAACTCGTTTCTCCGGTTCACAACAGCAAGCTAAGGACCGCACCGT 295
Query 325 CGTCGGTGTATTGCAGGAGGCTTTTCATAAGTTTATAGGCCAACCAGTAAAGATCTTTTG 384
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 296 CGTCGGTGTATTGCAGGAGGCTTTTCATAAGTTTATTGGCCAACCAGTGAAGATCTTCTG 355
Query 385 CTCAAGTCGAACGGATGCCGGAGTGCATGCACTGTCAAATGTTTGTCATGTTGATGTGGA 444
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 356 CTCAAGTCGAACGGATGCCGGAGTGCATGCACTGTCAAATGTTTGCCATGTTGATGTGGA 415
Query 445 ACGCATCAGTAAAAGGAAGCCTGGTGAAGTGTTACCACCTCATGAGCCTGGTGTGGTCCA 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ACGCATCAGTAAAAGGAAGCCTGGTGAAGTGTTACCACCTCATGAGCCTGGTGTGGTCCA 475
Query 505 GAGAGCGGTGAACCATTTTTTACAGAGAAAAGATGGTGATGTTATGGTGATTGATGTTCG 564
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 476 GAGAGCTGTGAACCATTTTTTACAGAGAAAAGATGGCGATGTTATGGTGATTGATGTTCG 535
Query 565 GTGTGTCCCAAGTAATTATCATGCCAGATATAAGGCCCAGGAGCGCACATACTTCTACCG 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GTGTGTCCCAAGTAATTATCATGCCAGATATAAGGCCCAGGAGCGCACATACTTCTACCG 595
Query 625 CTTGCTATCCGGGTCAGATCCATTATCAATCCTTGAAAAAGACCGTTGCTGGCATGTTCC 684
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CTTGCTATCGGGGTCAGATCCATTATCAATCCTTGAAAAAGACCGTTGCTGGCATGTTCC 655
Query 685 TGAGGAGTTAAATCTTCGCTTTATGCAGGAAGCATGCAGAGTTCTTGTTGGATCTCATGA 744
||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 656 TGAGGAGCTAAATCCTCGCTCTATGCAGGAAGCATGCAGAGTTCTTGTTGGATCTCATGA 715
Query 745 TTTTAGCTCCTTCAGGGCAGCTGGTTGCCAGGCAAAGTCACCTATGAGATCTTTAGATGA 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTTTAGCTCCTTCAGGGCAGCTGGTTGCCAGGCAAAGTCACCTATGAGATCTTTAGATGA 775
Query 805 ACTAAATATCACTGAAGTACCATCAACTCCATATTTTCCATCTATCACGGAAAGGACGTT 864
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 776 ACTCAATATTACTGAAGTACCATCAACTCCATATTTTCCATCTATCACGGAAAGGGCGTG 835
Query 865 GAGTAACCTAAACAATGGAGATCCTCTCGCATGTTCCAATCAACCCAAGTCTGAGACTGC 924
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 836 GAGTAACCAAAACAATGGAGATCCTCTCGCATGTTCCAGTCAACCCAAGTCTGAGACTGC 895
Query 925 TGGTGTTACTACTAATGTTGGAGAAGTGGAGGGCTCTACAGAGGGTGATTCTTTTGGTAG 984
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 896 TGGTGTTACTACTAATGTTGGAGAAGTGGAGGGGTCTACAGATGGTGATTCTTTTGGTAG 955
Query 985 AAGGAGACGCCACCGCTGCTATGTAGTTACAGCACGTTCCCGGGGTTTTCTGTACCACCA 1044
||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 956 AAGGAGACGGCACCGCTGCTATGTAGTTACAACGCGTTCCCGGGGTTTTCTGTACCACCA 1015
Query 1045 GGTTCGACTGATTGTAGGAGCACTGAAATGCGTAGGCACTGGAGAATTGACGGTCTCAGA 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GGTTCGACTGATTGTAGGAGCACTGAAATGCGTAGGCACTGGAGAATTGACGGTCTCAGA 1075
Query 1105 CGTTGAACGAATCCTGGAGGCGAAGACAGTGAGTGCAGCAAAACCCATGGCTCCTGCATC 1164
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1076 CGTTGAACGAATCCTGGAGGCGAAGACAGTGAGTGCAGCCAAACCCATGGCTCCTGCATC 1135
Query 1165 TGGTCTGTATCTTGCCCGTGTCAGATATGAGTTTCCATGAATACGTGAATTT-ACTTCAT 1223
||||||||||||||||||||||| ||||||||||||||||| | | || | |||||||
Sbjct 1136 TGGTCTGTATCTTGCCCGTGTCAAATATGAGTTTCCATGAAGATTT-AAGCTCACTTCAT 1194
Query 1224 TTCCGCAACAATGGGCGAGGAGTCACCAATATTGGTTTTTGTTCAGAAGCTGATTAG 1280
|||||| ||| |||| ||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 1195 TTCCGCTACAGTGGGTGAGGAGTTACCAAAATTGGTTTTTGTTCAGAAGCTGAATAG 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53935786920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5