BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09810.1
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471083 jgi|Araly1|471083|fgenesh2_kg.1__1037__AT1G09810.1 2470 0.0
> Ahg471083 jgi|Araly1|471083|fgenesh2_kg.1__1037__AT1G09810.1
Length=1756
Score = 2470 bits (1337), Expect = 0.0
Identities = 1642/1784 (92%), Gaps = 41/1784 (2%)
Strand=Plus/Plus
Query 4 TTTTTCTGTGAGGGTTCGGTTTGGTCGTCGTCGCAACTCCCCCACTTGTGAATTCCAAAG 63
|||||||||||||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct 1 TTTTTCTGTGAGGGTTCGGTTTGGTCGTCGTCGCAACT-TGCCACTTCTG--TTCCAAAG 57
Query 64 --TAC----ACTTAACACATACACAACCTCTTCAAGCGGTTTCCCCTGTTTGGTTTTACG 117
||| || |||| || ||||| |||||||||||||||||||||||||||||| |||
Sbjct 58 TATACATAAACATAACTCAAACACATCCTCTTCAAGCGGTTTCCCCTGTTTGGTTTAACG 117
Query 118 GCGGCTCTAAACCCGTTTTCTCAGTGTATCTTCAAAATTGATAATGGCCACTGAAAAGAA 177
|||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||
Sbjct 118 GCGGCTCTAAACCCGTTTTCTCAGTGTATCTTGATTATTGGTAATGGCCACTGAACAGAA 177
Query 178 TACTCTGGATTCTGAGGCTACTTTTGCGCAAACAGTACCAGCTCTTGATTCTACAACAAA 237
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 178 CACTCTGGATTCTGAGGCTACTTTTGCGCAAACAGTACCAGCTCCAGATCCTACAACAAA 237
Query 238 GAAACAGGATGAGTCTCCTCCAAAGAGTACCCCGTCTCTTACTGTCACTGCTTGTGCTAA 297
||||||||||||||||||||||| ||||||| || || |||||||||| | ||| |
Sbjct 238 GAAACAGGATGAGTCTCCTCCAACGAGTACCTCGCCTGTTACTGTCACCCCCACTGC--A 295
Query 298 TG--GATCTGATGTAGTATCTTCTCAGCCAAATGACAATGGCCAAGCACATACTACAGAT 355
|| ||||| |||| || ||| |||||||| || |||||||||| |||||| || |||||
Sbjct 296 TGTAGATCTAATGTGGTCTCTACTCAGCCAGATAACAATGGCCAGGCACATGCTGCAGAT 355
Query 356 TTTCGAAAGGGAAATCACCGTGACAAAAACAGCTCAGATGTCTATGCTGATTCGACTTTG 415
||| |||||||| | |||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 356 CTTCTAAAGGGAAGTTACCGTGACAAAAACAGCTCATATGTCTATTCTGCTTCGACTTTG 415
Query 416 CGTGGAGATCGACCAAAAGGAAGCAATTGTTTGTCTCAAACTTCTTTTTCGGCTCCTAAG 475
|||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 416 CGTGGAGATCGAGCAAAAACAAACAATTGTTGGTCTCAAACTTCTTTTTCGGCTCCTAAG 475
Query 476 CCTCTTGGAAATTTCAATGGTGCTGGTAGACTTCCTCCCAATACACAAGCACATGCATTC 535
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CCTCCTGGAAATTTCAATGGTGCTGGTAGACTTCCTCCCAATACACAAGCACATGCATTC 535
Query 536 AGACCACCATTTAAGGGAAAGGAAGCCGCAGGACAGTTCTTAACA-TTCTCCAATCAGAA 594
||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||
Sbjct 536 AGACCACCATTTAAGGGAAAGGAAGCCGCAGGACAGTACTTA-CAATTCTCCAATCAAAA 594
Query 595 GACAAGCTGTGTCCCATATTCTGGTTACATTAATGGAAACTCAAATAATGGTTTCTGGGA 654
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GAGAAGCTGTGTCCCATATTCTGGTTACATTAATGGAAACTCAAATAATGGTTTCTGGGA 654
Query 655 TCAAAGGGATCATAATAAGAAACCTGAGAGAAATGGAGAGTCTGACTACTTGGTTGAATT 714
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 655 TCAAAGAGATCATAATAAGAAACCTGAGAGAAATGGAGAATCTGACTACTTGGTTGAATT 714
Query 715 GAAATGTGGTCCGAGAGCCAATGCAAAGACTCGTCCTCCTTCCGAGTCGTCACCACTGAA 774
|||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| ||
Sbjct 715 GAAATGTGGTCCGAGAGCCAATGCAAAGACTCGTCCTCCTTCTGAGTCATCATCACCCAA 774
Query 775 GCAAAACAATTCGTTTGCCTTGGCTCTTCGTAGAGAGATGTATAACCTCCCTGACTTTCA 834
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 775 GCAAAACAATTCGTTTGCCTTGGCTCTTCGTAGAGAGATGTATAACCTCCCAGACTTTCA 834
Query 835 GACTGACTATGAAGATGCCAAGTTTTTCGTAATCAAGTCGTACAGCGAAGATGATGTTCA 894
|||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 835 GACTGACTATGAGGATGCCAAATTTTTCGTAATCAAGTCCTACAGTGAAGATGATGTCCA 894
Query 895 CAAGAGTATCAAATATTCTGTGTGGTCAAGCACTATCAACGGAAACAAGAAACTCGATGC 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CAAGAGTATCAAATATTCTGTGTGGTCAAGCACTATCAACGGAAACAAGAAACTCGATGC 954
Query 955 AGCTTTCCGTGATGCTGAAACAAAAACACTCGAGGATGGCAAGAAACGTCCAATATTTCT 1014
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 955 AGCTTTCCGCGATGCTGAAACAAAAACACTCGAGGATGGCAAGAAACGACCAATATTTCT 1014
Query 1015 CTTCTTCTCGGTGAATGCGAGTAGACAATTTGTGGGATTAGCTGAGATGGTTGGATATGT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CTTCTTCTCGGTGAATGCGAGTAGACAATTTGTGGGATTAGCTGAGATGGTTGGATATGT 1074
Query 1075 GGACTTCAACAAGGATTTGGATTTCTGGCAGGTTGATAAGTGGAGTGGCTTTTTCCCTGT 1134
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1075 GGACTTCAACAAGGATTTAGATTTCTGGCAGGTTGATAAGTGGAGCGGCTTTTTCCCGGT 1134
Query 1135 TGAATGGCATGTGGTTAAAGATATTCCTAACTGGGAACTACGCCATATCATCCTCGACAA 1194
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1135 TGAATGGCATGTGGTTAAAGATATCCCTAACTGGGAACTACGCCATATCATCCTCGACAA 1194
Query 1195 CAATGAGGACAAGCCAGTTACTCATACGAGAGATACTCACGAGATCAAACTCAAAGAAGG 1254
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1195 CAATGAGGACAAGCCAGTTACTCATACGAGGGATACTCACGAGATCAAACTCAAAGAAGG 1254
Query 1255 TCTCCAAATGCTTTCGATATTCAAGAAGTACTCTGCGGTAACATTTTTGTTAGACGACAT 1314
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1255 TCTCCAAATGCTTTCGATATTCAAGAAGTACTCTGCGGTAACATATTTGTTAGACGACAT 1314
Query 1315 GGACTTCTACGAAGAGCGAGAGAAGTCTCTTCGAGCGAAGAAGGAGCATAAACCAGCCAC 1374
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1315 GGACTTCTACGAAGAGCGAGAGAAGTCTCTTCGAATGAAAAAGGAGCATAAACCAGCCAC 1374
Query 1375 TCTTCGCATGGATCTCTTCAAAGAGAAAGACTATGACTATGAGATGGAAGGCAACAGGAG 1434
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1375 TCTTCGCATGGATCTCTTCAAAGAGAAAGACTATGATTATGAGATGGAAGGAAACAGGAG 1434
Query 1435 AATGAATCACCAAGAAAGAGGATATAATTGGAACAGAAGTAGCAATAGCAAAACACAAGC 1494
| ||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1435 AGTGAATCATCAAGAAAGAGGATATAATTGGAACAGAAGTAGCAGTAGCCAAACACAAGA 1494
Query 1495 ATCTCTTGTCAATCAAACCAAGTATCTTTCCATAAGAGGCTACTCTGGTTACAAGAAGAA 1554
|||||||||||||| ||||||| |||| ||||||||||||||||||| || |||||||
Sbjct 1495 ATCTCTTGTCAATCGAACCAAGAATCTCTCCATAAGAGGCTACTCTGCTTCCAAGAAGGG 1554
Query 1555 CACTGGCAATTCAACATGAGATGACATTCGTCAATCTTTAATTCCTCGTCTTCTTTATTT 1614
|||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1555 CACTGGCAATTCAAAATGAGATGACATTCTTCAATCTTTAGTTCCTCGTCTTCTTTATTT 1614
Query 1615 TATTCATTCATGAATTGCTTTAGTCAGTTCAGGAATCATTAGGGtttttttttCTTCCGT 1674
|||||| ||||||||||||||||| |||||||||||||||||| || |||||| | ||
Sbjct 1615 TATTCAGTCATGAATTGCTTTAGTTAGTTCAGGAATCATTAGG-TTCTTTTTT-TG--GT 1670
Query 1675 TGTTAGGGTTTGGTTTCTATTTTTTCTATTTCATATTCAGATGTCTTTAGGCCCACGGAT 1734
| | || |||| | |||| | || || | ||||| |||||| ||| ||||||
Sbjct 1671 T-T--GG-TTTG-T----ATTT---C-AT---AT-T-CAGATCTCTTTAAGCCTACGGAT 1712
Query 1735 TCATTTTCACGATCTCAATGATA-AATCA-C--TTTTCAGATAC 1774
||||||||||||||||||| ||| ||| | | |||||||||||
Sbjct 1713 TCATTTTCACGATCTCAATAATACAATAATCAGTTTTCAGATAC 1756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66619838505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5