BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G09812.1

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg334263 jgi|Araly1|334263|fgenesh1_pg.C_scaffold_1000828           671    0.0  


> Ahg334263 jgi|Araly1|334263|fgenesh1_pg.C_scaffold_1000828
Length=387

 Score =  671 bits (363),  Expect = 0.0
 Identities = 379/387 (98%), Gaps = 0/387 (0%)
 Strand=Plus/Plus

Query  1    ATGAACAAGTCAAGCTCATGGAGCATATACAGTCCCAGAGAGGGAGATAGTGAAGGGCCA  60
            ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  1    ATGAACAAGTCAAGCTCGTGGAGCATATACAGTCCCAGAGATGGAGAGAGTGAAGGGCCA  60

Query  61   TGGAGATCGTCAACGTCGATGAATGCGATCTCATTTGGGTTTGTAGCGACGGCGATACTC  120
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  61   TGGAGATCGTCAACGTCGATGAATGCAATCTCATTTGGGTTTGTAGCGACGGCGATACTC  120

Query  121  ATCTCCATGTTCTTGATCATGGCCATATTCGAGCATCTCTTTAGGCCTGAGAATTCTTCA  180
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATCTCTATGTTCTTGATCATGGCCATATTCGAGCATCTCTTTAGGCCTGAGAATTCTTCA  180

Query  181  TTTGATTCACCACATCAGATCAGACAAAGACAGAGAGATGGGTCCAGTCAGTTCCAGAAA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTTGATTCACCACATCAGATCAGACAAAGACAGAGAGATGGGTCCAGTCAGTTCCAGAAA  240

Query  241  CTTGCTGATCAAGCATCCATGGTTCCGGTGAGTACGGTGGTGGATGTATCGGTAGTGATG  300
            ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct  241  CTTGCTGATCAAGCATCAATGGTTCCGGTGAATACGGTGGTGGATGTATCGGTAGTGATG  300

Query  301  CCAGGGGAGAAGTTGCCGTCGCACATAGCTTTGCCGGCTCCGTTACCTTGTCGGAGAGAA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CCAGGGGAGAAGTTGCCGTCGCACATAGCTTTGCCGGCTCCGTTACCTTGTCGGAGAGAA  360

Query  361  GGCATTCATTGGCCTCTCCGCCTCTAA  387
            ||||||||||||||||||| |||||||
Sbjct  361  GGCATTCATTGGCCTCTCCACCTCTAA  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13850478807


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5