BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G09815.1 Length=658 Score E Sequences producing significant alignments: (Bits) Value Ahg471085 jgi|Araly1|471085|fgenesh2_kg.1__1039__AT1G09815.1 632 0.0 > Ahg471085 jgi|Araly1|471085|fgenesh2_kg.1__1039__AT1G09815.1 Length=558 Score = 632 bits (342), Expect = 0.0 Identities = 407/437 (93%), Gaps = 10/437 (2%) Strand=Plus/Plus Query 33 GACTCAAAGATTCAAAATTTGAACTGCAACgagagagagagagaaagagaAAGGAGGCTA 92 ||||||||||||||||||| ||||||| | |||||| | ||||||||||||||||||||| Sbjct 1 GACTCAAAGATTCAAAATTCGAACTGC-A-GAGAGA-A-AGAGAAAGAGAAAGGAGGCTA 56 Query 93 TGGCGACGACGGCGAAGAATTTGAAGGGTTTCTACAAGCAGACTAAAAGCAATATCACCG 152 | | | ||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 57 T-G-G-CGA---CGAAGAATTTGAAGGGTTTCTACAAGCAGACTAAAAGCAATGTCACCG 110 Query 153 GAGGTATCTCCAAGTCCAAGCCTTCTTCCCGGAAAGTGGCTCCCAAACACGCGGCGGCTC 212 |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 111 GAGGTATCTCCAAGTCCAAGCCTTCTTCACGGAAAGTCACTCCCAAACACGCGGCGGCTC 170 Query 213 AAGGTTCTGATGTTACCCAGCCCGCCGCATTGATTTCACACGGCTCCGTCGATCTCAACG 272 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 171 AAGGTTCTGATGTTACCCAGCCCGCCGCATTGATTTCACACGGCTCCCTCGATCTCAATG 230 Query 273 AGGATTATGACAAGGAGGAGGAGATGCTTAGACAATTTGACATGAACATCACTTATGGTC 332 ||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 231 AGGATTATGGCAAGGAGGAGGAGATGCTTAGACAATTTGACATGAACATCGCCTATGGTC 290 Query 333 CGTGCCTGGGTATGACGAGACTTGATCGATGGGAGCGTGCAGTGCGTCTTGGGATGAACC 392 | ||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||||| Sbjct 291 CTTGCTTGGGTATGACCAGACTTGATCGATGGGAGCGTGCTCTGCGTCTTGGAATGAACC 350 Query 393 CTCCCAATGAAATCGAGAAGCTTTTGAAGACCGGGAAAGTCCAGCAAGATTGTCTGTGGC 452 |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| Sbjct 351 CTCCCAATGAAATCGAGAAGCTTTTGAAAACTGGGAAAGTTCAGCAAGATTGTCTGTGGC 410 Query 453 AAGGTCGTGTCTAGATA 469 ||||||| ||||||||| Sbjct 411 AAGGTCGCGTCTAGATA 427 Score = 163 bits (88), Expect = 1e-39 Identities = 106/114 (93%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 537 TGGATGGGATGTTTGGTTCAGTCACTGGCTGGATCCACCCCACATGTAGTGTCCTCGATG 596 ||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 448 TGGTTGGGATGTTTGGTTCAGCCACTGGCTGGATCCA---CACATGTAGTGTCCTCGATG 504 Query 597 TTTCTAGTTTCAGGCGATAATGTTAAAACCTTGGTAATGGAATGCATCTTGTTT 650 |||||||| ||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 505 TTTCTAGTCTCAAGTGATAATGTTAAAACCTTGGTAATGGAATGCATCTTGTTT 558 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24131806461 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5