BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G09815.1

Length=658
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471085 jgi|Araly1|471085|fgenesh2_kg.1__1039__AT1G09815.1         632    0.0  


> Ahg471085 jgi|Araly1|471085|fgenesh2_kg.1__1039__AT1G09815.1
Length=558

 Score =  632 bits (342),  Expect = 0.0
 Identities = 407/437 (93%), Gaps = 10/437 (2%)
 Strand=Plus/Plus

Query  33   GACTCAAAGATTCAAAATTTGAACTGCAACgagagagagagagaaagagaAAGGAGGCTA  92
            ||||||||||||||||||| ||||||| | |||||| | |||||||||||||||||||||
Sbjct  1    GACTCAAAGATTCAAAATTCGAACTGC-A-GAGAGA-A-AGAGAAAGAGAAAGGAGGCTA  56

Query  93   TGGCGACGACGGCGAAGAATTTGAAGGGTTTCTACAAGCAGACTAAAAGCAATATCACCG  152
            | | | |||   ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  57   T-G-G-CGA---CGAAGAATTTGAAGGGTTTCTACAAGCAGACTAAAAGCAATGTCACCG  110

Query  153  GAGGTATCTCCAAGTCCAAGCCTTCTTCCCGGAAAGTGGCTCCCAAACACGCGGCGGCTC  212
            |||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||
Sbjct  111  GAGGTATCTCCAAGTCCAAGCCTTCTTCACGGAAAGTCACTCCCAAACACGCGGCGGCTC  170

Query  213  AAGGTTCTGATGTTACCCAGCCCGCCGCATTGATTTCACACGGCTCCGTCGATCTCAACG  272
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct  171  AAGGTTCTGATGTTACCCAGCCCGCCGCATTGATTTCACACGGCTCCCTCGATCTCAATG  230

Query  273  AGGATTATGACAAGGAGGAGGAGATGCTTAGACAATTTGACATGAACATCACTTATGGTC  332
            ||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct  231  AGGATTATGGCAAGGAGGAGGAGATGCTTAGACAATTTGACATGAACATCGCCTATGGTC  290

Query  333  CGTGCCTGGGTATGACGAGACTTGATCGATGGGAGCGTGCAGTGCGTCTTGGGATGAACC  392
            | ||| |||||||||| |||||||||||||||||||||||  |||||||||| |||||||
Sbjct  291  CTTGCTTGGGTATGACCAGACTTGATCGATGGGAGCGTGCTCTGCGTCTTGGAATGAACC  350

Query  393  CTCCCAATGAAATCGAGAAGCTTTTGAAGACCGGGAAAGTCCAGCAAGATTGTCTGTGGC  452
            |||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct  351  CTCCCAATGAAATCGAGAAGCTTTTGAAAACTGGGAAAGTTCAGCAAGATTGTCTGTGGC  410

Query  453  AAGGTCGTGTCTAGATA  469
            ||||||| |||||||||
Sbjct  411  AAGGTCGCGTCTAGATA  427


 Score =  163 bits (88),  Expect = 1e-39
 Identities = 106/114 (93%), Gaps = 3/114 (3%)
 Strand=Plus/Plus

Query  537  TGGATGGGATGTTTGGTTCAGTCACTGGCTGGATCCACCCCACATGTAGTGTCCTCGATG  596
            ||| ||||||||||||||||| |||||||||||||||   ||||||||||||||||||||
Sbjct  448  TGGTTGGGATGTTTGGTTCAGCCACTGGCTGGATCCA---CACATGTAGTGTCCTCGATG  504

Query  597  TTTCTAGTTTCAGGCGATAATGTTAAAACCTTGGTAATGGAATGCATCTTGTTT  650
            |||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct  505  TTTCTAGTCTCAAGTGATAATGTTAAAACCTTGGTAATGGAATGCATCTTGTTT  558



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24131806461


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5