BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09830.1
Length=1790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471087 jgi|Araly1|471087|fgenesh2_kg.1__1041__AT1G09830.1 2710 0.0
> Ahg471087 jgi|Araly1|471087|fgenesh2_kg.1__1041__AT1G09830.1
Length=1741
Score = 2710 bits (1467), Expect = 0.0
Identities = 1664/1756 (95%), Gaps = 25/1756 (1%)
Strand=Plus/Plus
Query 45 ACGCTGGTCCGAGTCCAGAGTCCTCTACTTTGACAG--TCTC---CCTCCATGTCGTCGT 99
|||||||||||||||| | ||| |||||||||||| |||| |||||||||||||||
Sbjct 1 ACGCTGGTCCGAGTCC--A-TCCGCTACTTTGACAGTCTCTCTTGCCTCCATGTCGTCGT 57
Query 100 TGTGTGCATCTAATTGCTATCCTTCA---TCTTCTTCTATCAATCTCTTCTCCAACAACA 156
||||||||||||||| |||||||||| |||||||||||||||||||||| | ||
Sbjct 58 TGTGTGCATCTAATTTCTATCCTTCATCTTCTTCTTCTATCAATCTCTTCT----C--CA 111
Query 157 ACAACCCAACTAAACCCTTTCTTCTCTCCCTCAGATTCGCCTCCTCCAATTCTCTTCCAT 216
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 112 ACAACCCAACTAAACCCTTTCTTCTCTCCCTCAGATTCGCCACCTCCAATTCTCTTCCCT 171
Query 217 TTGTTGCTCCTCTCAAATTCTCTACTACCAATCACGTCCTTAGTAACTCTCGTTTCTCTT 276
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 172 TTGTTGCTCCTCTCAAATTCTCTACCACCAATCACGTCCTTAG---CTCTCGTTTCTCTT 228
Query 277 CGAACCGAATCCAAAGACGCCtttttttGCTCCGATGCGTTTCAGAAGAATCTCAGCCGT 336
|||||||| |||||||||||| ||||||||| ||||||||||||||||||||| ||||||
Sbjct 229 CGAACCGATTCCAAAGACGCCATTTTTTGCTTCGATGCGTTTCAGAAGAATCTGAGCCGT 288
Query 337 CTCTTTCTATCGGTAACGGCGGCTCTGAAGAGAGAGTGAATGTTCTTGTAATTGGTGGAG 396
||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 289 CTCTTTCGGTCGGTAACGGCGGCTCTGAAGAAAGAGTGAATGTTCTTGTTATTGGTGGAG 348
Query 397 GAGGGAGAGAACACGCCCTTTGCCACGCCTTGAAGCGGTCTCCTTCTTGTGATTCTGTGT 456
||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||
Sbjct 349 GAGGGAGAGAACACGCCCTTTGCTACGCCTTGAAACGATCTCCATCTTGTGATTCTGTGT 408
Query 457 TATGCGCACCTGGAAACGCCGGTATATCCAGTTCCGGAGATGCCACTTGTGTACCTGACC 516
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 409 TATGCGCACCTGGAAACGCCGGTATATCAAGTTCCGGAGATGCCACTTGTGTACCTGACC 468
Query 517 TTGACATATCAGACAGTTTAGCTGTCATCTCTTTCTGTCAGAAATGGAATGTTGGTTTAG 576
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 469 TTGACATATCAGACAGTTTAGCTGTCATCTCTTTCTGTCAAAAATGGAATGTCGGTTTAG 528
Query 577 TGGTTGTTGGCCCTGAAGTGCCTCTTGTTGCTGGTCTCGCTAATGACCTTGTTAAGGCCG 636
||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 529 TGGTTATTGGCCCTGAAGTGCCTCTTGTTGCGGGTCTCGCTAATGACCTCGTTAAGGCCG 588
Query 637 GTATCCTCACCTTTGGCCCTTCTTCTCAAGCTGCTGCTTTGGAAGGTTCCAAGAACTTTA 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GTATCCTCACCTTTGGCCCTTCTTCTCAAGCTGCTGCTTTGGAAGGTTCCAAGAACTTTA 648
Query 697 TGAAGAATCTTTGCCACAAGTACAATATCCCTACTGCTAAGTATAAAACATTTTCTGATG 756
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TGAAGAATCTTTGCCTCAAGTACAATATCCCTACTGCTAAGTATAAAACATTTTCTGATG 708
Query 757 CATCTGCCGCGAAAGAATACATTCAAGAACAAGGGGCACCGATTGTGATTAAAGCGGATG 816
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 CATCTGCTGCGAAAGAATACATTCAAGAACAAGGGGCACCGATTGTGATTAAAGCGGATG 768
Query 817 GATTAGCAGCTGGAAAAGGAGTCACTGTTGCCATGGAACTAGAGGAGGCTTTTGAAGCTG 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GATTAGCAGCTGGAAAAGGAGTCACTGTTGCCATGGAACTAGAGGAGGCTTTTGAAGCTG 828
Query 877 TTGATTCTATGCTGGTCAAAGGTGTGTTTGGTTCTGCAGGATGTCAGGTGGTCGTTGAGG 936
||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 829 TTGATTCGATGCTGGTCAAAGGCGTGTTTGGTTCTGCAGGATGTCAGGTAGTCGTGGAGG 888
Query 937 AGTTTCTCGAGGGAGAAGAAGCGTCCTTCTTCGCACTTGTGGATGGAGAAAACGCCATTC 996
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 889 AGTTTCTCGAGGGAGAAGAAGCCTCCTTTTTCGCACTTGTGGATGGAGAAAACGCCATTC 948
Query 997 CTCTAGAATCTGCTCAGGACCACAAGCGTGTTGGAGATGGAGATACCGGTCCTAACACAG 1056
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 949 CTCTAGAATCTGCTCAGGACCACAAGCGGGTTGGAGATGGAGATACCGGTCCTAACACAG 1008
Query 1057 GCGGCATGGGAGCGTATTCTCCTGCACCGGTCTTGACCAAGGAGCTTCAGGATTTTGTGA 1116
|||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1009 GCGGAATGGGAGCTTATTCTCCTGCACCGGTCTTGACCAGGGAGCTTCAGGATTTTGTGA 1068
Query 1117 TGGAGTCTATAATCCATCCCACTGTTAAAGGAATGGCTGAAGAAGGATGTAAGTTTGTCG 1176
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1069 TGGAGTCTATAATTCATCCCACTGTTAAAGGAATGGCAGAAGAAGGATGCAAGTTTGTCG 1128
Query 1177 GCGTTCTGTTTGCGGGTCTCATGATCGAGAAGAAATCCGGTTTGCCTAAGCTTATTGAGT 1236
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1129 GCGTTCTGTTTGCGGGTCTCATGATCGAGAAGAAATCCGGTTTGCCTAAGCTGATTGAGT 1188
Query 1237 TCAATGTACGGTTTGGAGATCCAGAATGTCAGGTATTGATGATGCGTCTAGAGTCTGACC 1296
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1189 TCAATGTACGGTTTGGAGATCCGGAATGTCAGGTACTGATGATGCGTCTAGAGTCTGACC 1248
Query 1297 TAGCAAAAGTTTTGCTAGCGGCTTGTAAAGGCGAGCTAAGTGGTGTATCACTTGATTGGT 1356
|||||||||| |||||||||||||||||||| |||||||| || || |||||||||||||
Sbjct 1249 TAGCAAAAGTCTTGCTAGCGGCTTGTAAAGGTGAGCTAAGCGGCGTGTCACTTGATTGGT 1308
Query 1357 CAAAAGATTCAGCAATGGTGGTTGTAATGGCAAGCAATGGTTATCCTGGTTCTTATGAGA 1416
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1309 CAAAAGATTCAGCAATGGTGGTTGTAATGGCAAGCAATGGTTATCCCGGTGCTTATGAGA 1368
Query 1417 AAGGATCAATCATCAAAAACCTTGAAGAAGCTGAAA-GAGTTGCTCCTGGAGTGAAGGTT 1475
||||||||||||||| |||||||||||||||||||| | || ||||||||||||||||||
Sbjct 1369 AAGGATCAATCATCAGAAACCTTGAAGAAGCTGAAACG-GTAGCTCCTGGAGTGAAGGTT 1427
Query 1476 TTCCACGCAGGAACGGGTCTAGATTCAGAGGGGAATGTTGTAGCAACTGGGGGACGTGTT 1535
||||| |||||||||| ||| |||||||||||||||||| |||| |||||||||||||||
Sbjct 1428 TTCCATGCAGGAACGGATCTTGATTCAGAGGGGAATGTTATAGCGACTGGGGGACGTGTT 1487
Query 1536 CTTGGGGTCACGGCGAA-GGGTAAAGACTTGGAAGAGGCGCGTGAAAGAGCGTACTCGGC 1594
|||||||| |||||||| ||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1488 CTTGGGGTGACGGCGAAAGGG-AATGACTTGGAAGAGGCGCGTGAAAGAGCGTATTCGGC 1546
Query 1595 AGTACAACAGATCAACTGGCCTGGAGGTTTCTTTAGGCATGATATTGGTTGGAGAGCTCT 1654
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1547 GGTTCAACAGATCAACTGGCCTGGAGGTTTCTTTAGGCATGATATTGGTTGGAGAGCGCT 1606
Query 1655 TCGCCAGAAACAAGTGGCGACCAAAGAAGAGTGATGAGAAGGAATTTTGTTGTAATGGCT 1714
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct 1607 TCGCCAGAAACAAGTGGCGACGAAAGAAGAGTGATGAGAAGCAATTTTGTTGTAACGGCT 1666
Query 1715 TGTAAACCAAGAATCCAAAAACTTAAAACTCACTCCAATCTGTTAAGAGATGATTCAAAA 1774
||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1667 TGTAAACCAAGAAACCGAAA-CTTAAAACTCACTCCAATCTGTTAAGTGATGATTCAAAA 1725
Query 1775 TAACATTTTTGTTTAC 1790
||||||||||||||||
Sbjct 1726 TAACATTTTTGTTTAC 1741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67191192180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5