BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09840.1
Length=1899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471093 jgi|Araly1|471093|fgenesh2_kg.1__1047__AT1G09840.4 2350 0.0
Ahg475455 jgi|Araly1|475455|fgenesh2_kg.2__585__AT1G57870.1 1572 0.0
> Ahg471093 jgi|Araly1|471093|fgenesh2_kg.1__1047__AT1G09840.4
Length=1749
Score = 2350 bits (1272), Expect = 0.0
Identities = 1389/1444 (96%), Gaps = 14/1444 (1%)
Strand=Plus/Plus
Query 174 AAGAAAGAAGAAGAA-AAGACAATCGTCAAATGCTTGACTTTGGTTTCAGTTCTTCTTCA 232
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 AAGAAAGAAGAAGAAGAAGACAATCGTCAAATGCTTGACTTTGGTTTCAGTTCTTCTTCA 167
Query 233 CGACAGCTCAAGGAAGATCGGCTCTTTGATGGGATGGGACACCAAGAAATCACCATGGGT 292
||||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 168 CGACAGCTC----AAGATCGGCTCTTTGATGGGATGGGACACC---AATTCACCATGGG- 219
Query 293 TTATGATGCTATCAATTACTAGTAGTACGTGTTATCTTCTGAATATA-TATCATGGCATC 351
||||||||||||||| | || |||||||| |||||||| ||||| | ||||||||||||
Sbjct 220 TTATGATGCTATCAA--A-TACTAGTACGTTTTATCTTCAGAATA-AGTATCATGGCATC 275
Query 352 CTCTGGACTGGGAAATGGAGTAGGCACTTCGAGATCTGCCAAAGGTTTAAAGAGCTCTTC 411
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 276 TTCTGGACTGGGAAATGGAGTGGGCAGTTCGAGATCTGCCAAAGGTTTAAAGAGCTCTTC 335
Query 412 TAGTTCTGTCGATTGGTTGACCAGAGATTTGGCTGAGACGAGGATAAGGGACAAAGTAGA 471
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 336 TAGTTCAGTCGATTGGTTGACGAGAGATTTGGCTGAGACGAGGATAAGGGACAAAGTAGA 395
Query 472 GACCGATGATGAGAGAGATAGTGAACCAGATATTATTGATGGGGCTGGTGCTGAGCCTGG 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 396 GACCGATGATGAGAGAGATAGTGAACCAGATATTATTGATGGGGCTGGTGCTGAACCTGG 455
Query 532 TCATGTGATTAGAACCACACTCCGTGGTCGAAATGGTCAATCAAGACAGACAGTCAGTTA 591
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 456 TCATGTGATTCGAACCACACTCCGTGGTCGAAATGGTCAATCAAGACAGACAGTTAGCTA 515
Query 592 CATATCAGAACATGTTGTTGGTACTGGTTCCTTTGGCATGGTTTTCCAAGCTAAATGTAG 651
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 516 CATATCAGAACATGTTGTCGGTACTGGTTCCTTTGGCATGGTTTTCCAAGCTAAATGTAG 575
Query 652 GGAAACTGGGGAGGTTGTTGCCATCAAGAAGGTTCTACAAGACAAACGCTACAAGAACAG 711
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 576 GGAAACTGGGGAGGTTGTTGCTATCAAGAAGGTTCTACAAGACAAGCGGTACAAGAACAG 635
Query 712 GGAGCTACAAATAATGCAGATGCTAGACCATCCCAATGCCGTTGCTTTAAAGCATAGCTT 771
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 636 AGAGCTACAAATAATGCAGATGCTAGACCATCCCAATGTCGTTGCTTTAAAGCATAGTTT 695
Query 772 TTTCTCAAGAACAGACAACGAAGAGGTTTATTTGAATCTTGTCCTTGAATTTGTGCCTGA 831
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 696 TTTCTCAAGAACAGACAATGAAGAGGTTTATTTGAATCTTGTCCTTGAATTTGTGCCTGA 755
Query 832 GACCGTCAATCGTGTTGCAAGAAGTTATAGTAGGACAAACCAGCTGATGCCATTGATATA 891
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 756 GACCGTCAATCGTGTTGCAAGAAGTTATAGTAGGACGAACCAGCTGATGCCATTGATATA 815
Query 892 TGTTAAACTCTACACCTATCAGATTTGCAGGGCGCTTGCTTACATCCATAATTCCTTTGG 951
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 816 CGTTAAACTCTACACCTATCAGATTTGCAGGGCGCTTGCTTACATCCATAACTCCTTTGG 875
Query 952 TCTTTGTCACCGTGATATCAAGCCTCAAAACCTGCTGGTGAACCCACACACGCATCAGCT 1011
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 876 TCTTTGTCACCGTGATATTAAGCCTCAAAACCTGCTGGTAAACCCACACACGCATCAGCT 935
Query 1012 AAAAATATGTGATTTCGGGAGTGCAAAAGTGTTGGTAAAAGGAGAACCCAATGTTTCTTA 1071
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 936 AAAAATATGTGATTTCGGGAGAGCAAAAGTGTTGGTAAAAGGAGAACCCAATGTTTCTTA 995
Query 1072 CATCTGTTCTAGATACTATCGTGCTCCAGAACTCATTTTTGGTGCCAGTGAATACACAAC 1131
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 996 CATCTGCTCAAGATACTATCGTGCTCCAGAACTTATTTTTGGTGCCAGTGAATACACAAC 1055
Query 1132 TGCAATTGATATATGGTCCACTGGTTGTGTGATGGCCGAACTGCTTCTTGGACAGCCTCT 1191
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1056 TGCAATCGATATATGGTCCACTGGTTGTGTGATGGCCGAACTACTTCTTGGACAGCCTCT 1115
Query 1192 GTTTCCTGGTGAGAGCGGAGTTGATCAGCTTGTTGAAATCATTAAGGTTTTAGGTACACC 1251
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1116 GTTTCCTGGTGAGAGCGGAGTTGATCAACTTGTTGAAATCATTAAGGTTTTAGGTACACC 1175
Query 1252 AACAAGGGAAGAAATCAAGTGCATGAATCCAAACTATACAGAATTTAAGTTTCCGCAGAT 1311
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1176 AACAAGGGAAGAAATCAAGTGCATGAATCCAAACTATACAGAATTTAAGTTTCCCCAGAT 1235
Query 1312 AAAACCTCATCCATGGCACAAGGTGTTCCAAAAACGTTTGCCACCAGAAGCAGTTGATCT 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 AAAACCTCATCCATGGCACAAGGTGTTCCAAAAACGTTTGCCACCAGAAGCAGTTGATCT 1295
Query 1372 TCTTTGTAGGTTCTTCCAATATTCCCCCAATTTGAGATGTACAGCTTTGGAAGCTTGTAT 1431
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1296 TCTTTGTAGGTTCTTCCAGTATTCCCCTAATTTGAGATGTACAGCTTTGGAAGCTTGTAT 1355
Query 1432 CCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACT 1491
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 TCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACT 1415
Query 1492 TCCTCCACTTTTCAACTTTAAACCGCAAGAGCTATCTGGCATACCTCCTGAAATCGTGAA 1551
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1416 TCCTCCACTTTTCAACTTTAAACCGCAAGAGCTATCTGGCATCCCTCCTGAAATCGTGAA 1475
Query 1552 CAGGCTTGTCCCAGAGCATGCCCGTAAGCAGAACCTCTTCATGGCTTTGCATTCGTAAGA 1611
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1476 CAGGCTTGTACCAGAGCAAGCCCGTAAGCAGAACCTCTTCATGGCTTTGCATTCATAAGA 1535
Query 1612 CGCT 1615
||||
Sbjct 1536 CGCT 1539
Score = 152 bits (82), Expect = 9e-36
Identities = 93/98 (95%), Gaps = 1/98 (1%)
Strand=Plus/Plus
Query 1 GTCGTCTCATATTCTCGTTTGATTCAAAACGATAGAAATCGACAAAGAAGG-TGTGAAGA 59
||||||||||||||||||||||||||||||| |||||||||| |||||||| || |||||
Sbjct 13 GTCGTCTCATATTCTCGTTTGATTCAAAACGGTAGAAATCGAGAAAGAAGGCTGAGAAGA 72
Query 60 AGTTGGGAAAACAAAATTAACGCTTGAAGAATCTAAAG 97
||||| ||||||||||||||||||||||||||||||||
Sbjct 73 AGTTGTGAAAACAAAATTAACGCTTGAAGAATCTAAAG 110
> Ahg475455 jgi|Araly1|475455|fgenesh2_kg.2__585__AT1G57870.1
Length=1829
Score = 1572 bits (851), Expect = 0.0
Identities = 1196/1362 (88%), Gaps = 26/1362 (2%)
Strand=Plus/Plus
Query 257 TTTGATGGGATGGGACACCAAGAAATCACCATGGGTTTATGATGCTATCAATTACTAGTA 316
||||||||||||||||||| ||| | | || || || || |||||||||| ||
Sbjct 264 TTTGATGGGATGGGACACC---TAATTGCTA-AGGATTGTGGTGTTATCAATTAC---TA 316
Query 317 GTACGTGTTATCTTCTGAATATA-TATC-ATGGCATCCTCTGGA-CTGGGAAATGGAGTA 373
||||||||||||||| ||| | | | | |||| || ||| | ||||||||||||||
Sbjct 317 GTACGTGTTATCTTCAGAACA-ACCA-CGATGGAAT-CTC---ATCTGGGAAATGGAGTG 370
Query 374 GGCACTTCGAGATCTGCCAAAGGTTTAAAGAGCTCTTCTAGTTCTGTCGATTGGTTGACC 433
|||| |||||||||||||||| | |||||| | |||||||||| || |||||||||| |
Sbjct 371 GGCAGTTCGAGATCTGCCAAAAATATAAAGAACACTTCTAGTTCAGTTGATTGGTTGAGC 430
Query 434 AGAGATTTGGC-TGAGACGAGGATAAGGGACAAAG-TAGAGACCGATGATGAGAGAGATA 491
|||||| | || ||||| || |||||||||| ||| |||| | ||||| || ||||| |
Sbjct 431 AGAGATAT-GCTTGAGATGAAGATAAGGGAC-AAGACAGAGGCTGATGAGGACAGAGACA 488
Query 492 GTGAACCAGATATT-ATTGATGGGGCTGGTGCTGAGCCTGGTCATGTGATTAGAACCACA 550
||||||||||| || |||||||||| |||||| || |||||||||||||| ||||| |||
Sbjct 489 GTGAACCAGAT-TTCATTGATGGGGTTGGTGCAGAACCTGGTCATGTGATCAGAACTACA 547
Query 551 CTCCGTGGTCGAAATGGTCAATCAAGACAGACAGTCAGTTACATATCAGAACATGTTGTT 610
|||||||| |||||||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 548 CTCCGTGGACGAAATGGTCAATCAAGACAGACAGTCAGTTACATAGCAGAACACGTAGTT 607
Query 611 GGTACTGGTTCCTTTGGCATGGTTTTCCAAGCTAAATGTAGGGAAACTGGGGAGGTTGTT 670
|| |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 608 GGAACTGGTTCCTTTGGAATGGTTTTCCAAGCTAAATGCAGAGAAACTGGGGAGGTTGTT 667
Query 671 GCCATCAAGAAGGTTCTACAAGACAAACGCTACAAGAACAGGGAGCTACAAATAATGCAG 730
|||||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||||
Sbjct 668 GCCATCAAAAAGGTTCTACAAGACAAGCGCTACAAGAACAGGGAATTACAAATTATGCAG 727
Query 731 ATGCTAGACCATCCCAATGCCGTT-GCTTTAAAGCATAGCTTTT-TCTCAAGAACAGACA 788
|||||||||||||| |||| ||| | ||||||||||||||| | | ||||||||||| |
Sbjct 728 ATGCTAGACCATCCGAATGTTGTTTG-TTTAAAGCATAGCTTCTAT-TCAAGAACAGAAA 785
Query 789 ACGAAGAGGTTTATTTGAATCTTGTCCTTGAATTTGTGCCTGAGACCGTCAATCGTGTTG 848
| |||||||||||| | |||||||||||||||||||| || ||||| ||||||||| ||
Sbjct 786 ATGAAGAGGTTTATCTAAATCTTGTCCTTGAATTTGTTCCCGAGACTGTCAATCGTACTG 845
Query 849 CAAGAAGTTATAGTAGGACAAACCAGCTGATGCCATTGATATATGTTAAACTCTACACCT 908
| ||||| || ||||| | |||||||||||||||||||||||||| ||||||||| | |
Sbjct 846 CCAGAAGCTACAGTAGAATGAACCAGCTGATGCCATTGATATATGTCAAACTCTACGCTT 905
Query 909 ATCAGATTTGCAGGGCGCTTGCTTACATCCATAATTCCTTTGGTCTTTGTCACCGTGATA 968
||||||||||||||| |||||||||| | ||||||| || ||||||||||||||| ||||
Sbjct 906 ATCAGATTTGCAGGGGGCTTGCTTACCTTCATAATTGCTGTGGTCTTTGTCACCGGGATA 965
Query 969 TCAAGCCTCAAAACCTGCTGGTGAACCCACACACGCATCAGCTAAAAATATGTGATTTCG 1028
| ||||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||| |
Sbjct 966 TTAAGCCCCAAAACCTGCTAGTGAATCCACACACACATCAGCTAAAAATTTGTGATTTTG 1025
Query 1029 GGAGTGCAAAAGTGTTGGTAAAAGGAGAACCCAATGTTTCTTACATCTGTTCTAGATACT 1088
||||||||||||||||||| ||||||||||||||| |||||||||| ||||| |||||||
Sbjct 1026 GGAGTGCAAAAGTGTTGGTGAAAGGAGAACCCAATATTTCTTACATTTGTTCAAGATACT 1085
Query 1089 ATCGTGCTCCAGAACTCATTTTTGGTGCCAGTGAATACACAACTGCAATTGATATATGGT 1148
||||||| ||||| ||||||||||| |||| ||| |||||||||||||| || |||||||
Sbjct 1086 ATCGTGCCCCAGAGCTCATTTTTGGAGCCACTGAGTACACAACTGCAATAGACATATGGT 1145
Query 1149 CCACTGGTTGTGTGATGGCCGAACTGCTTCTTGGACAGCCTCTGTTTCCTGGTGAGAGCG 1208
|||| |||||||||||||| |||||||| ||||||||||||||||||||||| || || |
Sbjct 1146 CCACAGGTTGTGTGATGGCTGAACTGCTGCTTGGACAGCCTCTGTTTCCTGGCGAAAGTG 1205
Query 1209 GAGTTGATCAGCTTGTTGAAATCATTAAGGTTTTAGGTACACCAACAAGGGAAGAAATCA 1268
|||| || || ||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 1206 GAGTCGACCAACTTGTTGAAATCATTAAGGTTTTGGGTACACCAACAAGGGAGGAGATCA 1265
Query 1269 AGTGCATGAATCCAAACTATACAGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGC 1328
| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1266 AATGCATGAATCCAAACTACACAGAATTTAAATTTCCCCAGATAAAACCTCATCCTTGGC 1325
Query 1329 ACAAGGTGTTCCAAAAACGTTTGCCACCAGAAGCAGTTGATCTTCTTTGTAGGTTCTTCC 1388
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1326 ACAAGGTTTTCCAAAAACGTTTGCCACCTGAAGCAGTAGATCTTCTTTGTAGGTTCTTCC 1385
Query 1389 AATATTCCCCCAATTTGAGATGTACAGCTTTGGAAGCTTGTATCCATCCGTTATTTGATG 1448
| ||||| || ||||||||||| ||||| |||||||||||||||||||||| |||||||
Sbjct 1386 AGTATTCTCCTAATTTGAGATGCACAGCGGTGGAAGCTTGTATCCATCCGTTCTTTGATG 1445
Query 1449 AGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACT 1508
||||||| ||||||||| |||||||||| || ||||| |||||||||||||||||||| |
Sbjct 1446 AGCTAAGAGACCCAAACGCTCGTCTTCCAAACGGCCGGCCACTTCCTCCACTTTTCAATT 1505
Query 1509 TTAAACCGCAAGAGCTATCTGGCATACCTCCTGAAATCGTGAACAGGCTTGTCCCAGAGC 1568
|||||||||||||||| ||||| || |||||||||| |||| || ||||||||||||| |
Sbjct 1506 TTAAACCGCAAGAGCTCTCTGGTATCCCTCCTGAAACCGTGGACCGGCTTGTCCCAGAAC 1565
Query 1569 ATGCCCGTAAGCAGAACCTCTTCATGGCTTTGCATTCGTAAG 1610
|||||||||||||||||| ||||||||| || || |||||||
Sbjct 1566 ATGCCCGTAAGCAGAACCACTTCATGGCATTACACTCGTAAG 1607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71343028885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5