BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09850.1
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471096 jgi|Araly1|471096|fgenesh2_kg.1__1050__AT1G09850.1 2490 0.0
> Ahg471096 jgi|Araly1|471096|fgenesh2_kg.1__1050__AT1G09850.1
Length=1641
Score = 2490 bits (1348), Expect = 0.0
Identities = 1552/1648 (94%), Gaps = 24/1648 (1%)
Strand=Plus/Plus
Query 8 CCAAAACTATCTCCACGATTCTAACAAACAAA-AATTACAG--AAATGTCAATGTCATCG 64
|||||||||||||||||||||||| ||| ||| || ||||| |||||||||||||||||
Sbjct 1 CCAAAACTATCTCCACGATTCTAA-AAA-AAATAA-TACAGAAAAATGTCAATGTCATCG 57
Query 65 tcctcctttatctctctcactttcttcttccttcttctcgtttcttcatcgtcatcttcc 124
||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct 58 TCCTCCTTTGTCTCTCTCACTTTCTTCTTCCTTTTTCTCGTTTCTTCACCTTCATCTTCC 117
Query 125 gatgacatctctGAGCTATTCGACGACTGGTGCCAGAAACATGGCAAAACGTACGGTTCA 184
||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||||||
Sbjct 118 GATGACATCTCCGAGCTGTTCGACGACTGGTGCCAGAGACATGGCAAAACTTACGGTTCA 177
Query 185 GAAGAAGAGAGGCAACAGAGGATTCAAATCTTTAAAGATAATCACGACTTCGTTACGCAA 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 178 GAAGAAGAGAGGCAACAGAGGATTCAAATCTTTAAAGATAATCACGACTTCGTTACCCAA 237
Query 245 CACAATCTCATCACTAACGCTACTTActctctctctctcAATGCTTTCGCGGATCTGACT 304
||||||| ||||||||| |||||||| || |||||||||||||| |||||||||||||||
Sbjct 238 CACAATCGCATCACTAATGCTACTTATTCCCTCTCTCTCAATGCCTTCGCGGATCTGACT 297
Query 305 CACCACGAGTTCAAGGCTTCTCGTCTTGGTCTCTCTGTTTCCGCTCCGTCGGTGATAATG 364
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 298 CACCACGAGTTCAAGGCTTCTCGTCTTGGACTCTCTGTTTCCGCTCCGTCGGTGATAATG 357
Query 365 GCTAGTAAGGGACAGAGTCTCGGTGGTAGCGTAAAGGTTCCAGATTCTGTTGATTGGAGA 424
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 358 GCTAGTAAGGGACAGAGTCTGGGTGGTAGCGCAAAGGTTCCAGATTCTGTTGATTGGAGG 417
Query 425 AAGAAGGGAGCTGTTACTAATGTCAAAGATCAAGGAAGCTGCGGGGCATGTTGGTCGTTC 484
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AAGAAAGGAGCTGTTACTAATGTCAAAGATCAAGGAAGCTGCGGGGCATGTTGGTCGTTC 477
Query 485 TCGGCGACTGGAGCTATGGAGGGAATTAACCAGATAGTAACAGGAGATCTCATCAGCCTC 544
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 478 TCGGCGACTGGAGCTATGGAGGGAATCAACCAGATTGTAACAGGAGATCTCATCAGCCTC 537
Query 545 TCTGAGCAGGAACTGATTGATTGTGACAAGTCCTACAATGCTGGCTGTAATGGTGGTCTC 604
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 538 TCTGAGCAGGAACTGGTTGATTGTGACAAGTCCTACAATGCTGGCTGCAATGGTGGTCTC 597
Query 605 ATGGACTATGCTTTTGAATTTGTCATTAAAAACCATGGAATAGACACAGAGAAAGACTAT 664
|||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 598 ATGGACTATGCTTTCGAATTCGTCATAAAAAACCATGGTATAGACACAGAGAAAGACTAT 657
Query 665 CCTTATCAAGAACGTGATGGCACCTGTAAGAAGGATAAGTTGAAACAAAAGGTTGTGACA 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CCTTATCAAGAACGTGATGGCACCTGTAAGAAGGATAAGTTGAAACAAAAGGTTGTGACA 717
Query 725 ATTGATAGCTATGCTGGTGTAAAATCAAATGATGAGAAAGCGTTAATGGAGGCTGTAGCG 784
|||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||||
Sbjct 718 ATTGATAGCTATGCTGGTGTAAAATCCAATGACGAGAAAGCCTTAAGGGAGGCTGTAGCA 777
Query 785 GCTCAGCCAGTTAGTGTTGGCATCTGTGGAAGCGAGAGAGCGTTTCAGCTATATTC---- 840
||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 778 GCTCAGCCAGTAAGTGTTGGCATTTGTGGAAGCGAGAGAGCGTTTCAGTTATATTCGAGG 837
Query 841 -T-AGTGGAATATTCTCTGGCCCGTGTTCGACATCATTGGATCATGCTGTGCTCATAGTA 898
| |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 838 GTGAGTGGAATATTCTCCGGCCCGTGTTCCACATCATTGGATCACGCTGTGCTCATAGTA 897
Query 899 GGATATGGTTCACAGAATGGTGTTGATTATTGGATTGTGAAAAACTCATGGGGAAAAAGT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GGATATGGTTCACAGAATGGTGTTGATTATTGGATTGTGAAAAACTCATGGGGAAAAAGT 957
Query 959 TGGGGAATGGATGGGTTTATGCACATGCAGCGTAACACTGAAAATTCAGACGGCGTT-TG 1017
|||||||||||||||||||||||||||||||||||||| | |||||||| || | | ||
Sbjct 958 TGGGGAATGGATGGGTTTATGCACATGCAGCGTAACACCGGGAATTCAGAAGG-GATATG 1016
Query 1018 CGGAATCAACATGCTTGCTTCATATCCCATCAAGACACATCCAAACCCGCCTCCACCGTC 1077
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1017 CGGAATCAATATGCTTGCTTCATATCCCATCAAGACACATCCAAACCCGCCTCCACCATC 1076
Query 1078 CCCTCCTGGCCCTACAAAATGCAACCTTTTCACGTATTGTTCATCTGGAGAGACTTGTTG 1137
|||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1077 CCCTCCTGGCCCCACAAAATGCAACCTTTTCACCTATTGTTCAGCTGGAGAGACTTGTTG 1136
Query 1138 CTGTGCAAGAGAA-TTGTTTGGTTTATGCTTCTCATGGAAATGCTGCGAGATAGAATCCG 1196
|||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1137 CTGTGCAAGA-AACTTGTTTGGTTTATGTTTTTCATGGAAATGCTGCGAGATAGAATCCG 1195
Query 1197 CTGTGTGTTGCAAG-GATGGTCGTCATTGTTGTCCACATGATTACCCTGTTTGTGATACA 1255
|||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1196 CTGTGTGTTGCA-GCGATGGTCGTCATTGTTGTCCACATGATTACCCGGTTTGTGATACA 1254
Query 1256 ACCAGAAGTCTCTGCCTTAAGAAAACTGGTAATTTCACTGCGATCAAGCCCTTCTGGAAG 1315
||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 1255 ACCAGAAGTCTATGCCTTAAGAAAACCGGTAATTTCACGGCGATCAAGCCTTTCTGGAAG 1314
Query 1316 AAGAATTCTTCAAA-ACAACTTGGCCGATTTGAGGAATGGGTTATGTGAGAGAAGTTTTA 1374
||| |||||||||| | |||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1315 AAGGATTCTTCAAATA-AACTTGGCAGATTTGAGGAATGGGTTATGTGAGAGAATTTTTA 1373
Query 1375 CGCACATGTTACAGAAAATTCAAACTCATCCATACAAAAACCTCGTAGATTCGATTAT-- 1432
|||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1374 CGCATATGTTACAGAACTTTCAAACTCATCCATACAAAAACCTTGTAAATTCGATTATAT 1433
Query 1433 --CTGCGAGGGGATTATTTGTAGCTGTTATTGAGATAGATATATACGATATCATCACGGA 1490
|||||||||| ||||||||||||||| |||||||| | ||||| ||||||||||||||
Sbjct 1434 ATCTGCGAGGGGGTTATTTGTAGCTGTTGTTGAGATATAAATATATGATATCATCACGGA 1493
Query 1491 TGTATTTTTAGTCTCTCATTTGGATGTATACAACTTCTGAGTCAATAAAGGACACTTGCA 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TGTATTTTTAGTCTCTCATTTGGATGTATACAACTTCTGAGTCAATAAAGGACACTTGCA 1553
Query 1551 GGACAAGCACAGTATTTGTATCTGCAAGACACATAAAGTAATAAGAGTATCATCTATGTA 1610
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1554 GGACAAACACAGTATTTGTATCTGCAAGGCACATAAAGTAATAAGAGTATCATCTATGTA 1613
Query 1611 TATTATAGAGAGACTAAGCTTCACTGTT 1638
|||| |||||||| ||||||||||||||
Sbjct 1614 TATTGTAGAGAGATTAAGCTTCACTGTT 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61401474940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5