BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09860.1
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334268 jgi|Araly1|334268|fgenesh1_pg.C_scaffold_1000833 1760 0.0
Ahg471096 jgi|Araly1|471096|fgenesh2_kg.1__1050__AT1G09850.1 228 9e-59
> Ahg334268 jgi|Araly1|334268|fgenesh1_pg.C_scaffold_1000833
Length=1146
Score = 1760 bits (953), Expect = 0.0
Identities = 1089/1154 (94%), Gaps = 12/1154 (1%)
Strand=Plus/Plus
Query 23 ATGGAAGAGTTTCAAGGTCCAGAACCACGCGGCCAAATGATGAGCGAGAATCCTCGATCC 82
|||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 1 ATGGAAGAGTTTCAAGGTCCAGAACCACGCAGCCAGATGATGAGCGAGAATTCTCGATCC 60
Query 83 TTGGAGCTCAATCAACGCAAATGGTGGATCTCTGTTTT-TATCTGCGGTTTCTTGATCTT 141
||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 61 CTGGAGCTCAATCAGCGCAAATGGTGGATCTCTGTTTTCT-TCTGCGGTTTCATGATCTT 119
Query 142 TGCCGGAGACTCTCTTGTCATGCTTCTGTTGAACTTCTTCTACGTCCAAGATAATCGATC 201
| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TACGGGAGATTCTCTTGTCATGCTTCTGTTGAACTTCTTCTACGTCCAAGATAATCGATC 179
Query 202 AGAGAGTGATCAAGACCGACAATACAAAGGGACATGGACACAAGCTCTGATCCAAAACGC 261
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 AGAGAGTGATCAGGACCGACAATACAAAGGAACATGGACACAAGCTCTGATCCAAAACGC 239
Query 262 TGCCTTTCCGATCTTAATTCCATTCTTCTTC-ATTCTTTCTTCACCAAAACCAAACCCGG 320
|||||||| ||||| ||||||||||| ||| | | |||||| | ||| |||| ||
Sbjct 240 CGCCTTTCCAATCTTGATTCCATTCTTTTTCAAAT-TTTCTT---C---ACCGAACCTGG 292
Query 321 AAACAGTCTCCAATCAAACAAACAATGGCTGGTTTCGAGTTCTCTCGCTCTACGTTTCTC 380
||||||||||||||||||| ||||| |||||||||||||||||| |||| ||||||||||
Sbjct 293 AAACAGTCTCCAATCAAACCAACAACGGCTGGTTTCGAGTTCTCCCGCTATACGTTTCTC 352
Query 381 TTGGTGTTCTTGTCTCTGTTTATAGCAAGTTATACGCGCTGGGGAAATTATACGTAGGAT 440
| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct 353 TCGGTGTTCTTGTCTCTGTTTATAGCAAGTTATATGCGCTAGCGAAATTATACGTAGGAT 412
Query 441 GGGGAATTTTGTTATCAACTCAATTGATACTCACCTCCCTCTTCTCAGCTTTCATAAACC 500
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 413 GGGGGATTTTGGTATCAACTCAATTGATACTCACCTCCCTCTTCTCAGCTTTCATTAACC 472
Query 501 GTCTCAAGTTTAACAGATGGATCATCATATCGATAATCTTCACTCTTGGGGCTGACTTTT 560
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 473 GTCTCAAGTTTAACAGATGGATCATCATATCGATAATCTTCACTCTTGCGGCCGACTTTT 532
Query 561 TTGGTGGCCCTGCCTTTGCTGGAACCCCTAATGAAGATGAAACTGATCCTTACGACATCA 620
|||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 533 TTGGCAGCCCTGCGTTTGCTGGAACCCCTGATGAAGATGAAACTGATGCTTACGACATCA 592
Query 621 AGGCATGGTTGATACTCATATTCCCTACTCTTGCTTTCTCCTTGTCTCTGTGCTTAATGC 680
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 593 AGGCATGGTTGATACTCATATTCCCTACTCTTGCTTTCTCCTTGTCTCTGTGCCTAATGC 652
Query 681 AGCTCGGATTCGACAAAGTGTTGGTGAAGACAAAGAGGTATGGTAACAAGAAGGTCTTTC 740
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 653 AGCTCGGGTTCGAAAAAGTGTTGGTGAAGACAAAGAGGTATGGTAACAAGAAGGTGTTTC 712
Query 741 GGATGGTCTTGGAGATGCAAATCTGTGTTTCCTTCATCGCCACACTCATTTGCACTGTGG 800
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 713 GGATGGTCTTGGAGATGCAAATCTGTGTTTCCTTCATCGCCACACTCGTTTGCACTGTGG 772
Query 801 GTCTGTTTGCGAGTGGTGAGTTTAAGGAGTTAAAAGGCGACAGCGAGAGGTTTAAGAAAG 860
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 773 GTCTGTTTGCGAGTGGTGAGTTTAAGGAGTTAAAAGGTGACAGTGAGAGGTTTAAGAAAG 832
Query 861 GGAAGACTTACTACATTCTGAGTTTGGTCGGGTTGGCTCTCTCTTGGCAGGTTTGGGCGG 920
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GGAAAACTTACTACATTCTGAGTTTGGTCGGGTTGGCTCTCTCTTGGCAGGTTTGGGCGG 892
Query 921 TCGGGCTGTTAGGTTTGGTGCTTTTGGTGTCCGGTTTATTCGCTGATGTTGTTCATATGG 980
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 893 TCGGGCTGTTAGGTCTGGTGCTTTTGGTGTCCGGTTTATTCACTGATGTTGTTCATATGT 952
Query 981 GTGCTTCACCGGTTGTGGCTCTGCTAGTTGTGTTGGCTTTTGATTTCATGGACGATGAAT 1040
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 953 GTGCTTCACCTGTTGTGGCTCTGCTTGTTGTGTTGGCTTTTGATTTCATGGACGACGACT 1012
Query 1041 TTGGTTGGCAGAGAAGAGGTGCTTTGCTAGGGGCGGTCTTGGCTCTAGCTTCTTACTTCT 1100
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1013 TTGGTTGGCAGAGAAGAGGTGCTTTGCTAGGGGCAGTCTTGGCCCTAGCTTCTTACTTCT 1072
Query 1101 ACTCCCTGCACACAAA-AAAGAAGAAGGAGATCGCAGAACTGAACAAGAGAGAGAACAAC 1159
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 ACTCCCTGCACA-AAACAAAGAAGAAGGAGATCGCAGAACTGAACAAGAGAGAGAACAAC 1131
Query 1160 AACAGTGAAGCTTA 1173
||||||||||||||
Sbjct 1132 AACAGTGAAGCTTA 1145
> Ahg471096 jgi|Araly1|471096|fgenesh2_kg.1__1050__AT1G09850.1
Length=1641
Score = 228 bits (123), Expect = 9e-59
Identities = 131/135 (97%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 1160 AACAGTGAAGCTTAGTCTCTCTATAATATACATAGATGATACTCTTATTACTTTATGTGT 1219
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1641 AACAGTGAAGCTTAATCTCTCTACAATATACATAGATGATACTCTTATTACTTTATGTGC 1582
Query 1220 CTTGCAGATACAAATACTGTGCTTGTCCTGCAAGTGTCCTTTATTGACTCAGAAGTTGTA 1279
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1581 CTTGCAGATACAAATACTGTGTTTGTCCTGCAAGTGTCCTTTATTGACTCAGAAGTTGTA 1522
Query 1280 TACATCCAAATGAGA 1294
|||||||||||||||
Sbjct 1521 TACATCCAAATGAGA 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48377981673
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5