BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09870.1
Length=1694
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312030 jgi|Araly1|312030|fgenesh1_pm.C_scaffold_1000810 2499 0.0
> Ahg312030 jgi|Araly1|312030|fgenesh1_pm.C_scaffold_1000810
Length=1464
Score = 2499 bits (1353), Expect = 0.0
Identities = 1428/1465 (97%), Gaps = 2/1465 (0%)
Strand=Plus/Plus
Query 77 ATGGCGACGAAGACTGTTTGGATCATACTGTTGTGTCTATTTGTTGTTTCCCAGGCAGAT 136
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1 ATGGCGACGAAGACTGTTTGGATCATACTGTTGTGTCTATTTGTTGTTTCACAGGCGGAT 60
Query 137 CAGGGTTTCGATGTTCGTCATCACCTCTCCACCGTCACCAGATACTCTACTTCGAAAGAT 196
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 CAGGGTTTCGATGTTCGTCATCACCTCTCCACCGTCACCAGATACTCTGTTTCGAAAGAT 120
Query 197 GTTACCCAAAATTTGATTGAAGGGTCGAATGTTCCTAGTGAGTGTACACCTATCCACCTT 256
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 121 GTTACCCAAAATTTGATTGAAGGGTCGAGTGTTCCCAGTGAGTGTACACCTATCCACCTT 180
Query 257 AACCTTGTGGCTAGGCATGGAACTCGTTCTCCGACCAAGAAACGATTGCGGGAATTGGA- 315
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 AACCTTGTGGCTAGGCATGGAACTCGTTCTCCGACCAAGAAACGGTTGCGGGAATTGGAG 240
Query 316 AAGTTTGGCTGGTAGGTTTAAGGAACTGGTAAGAGATGCAGAAGCTAGGAAATTGCCTTC 375
|| ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 241 AA-TTTGGCTGGTAGGTTAAAAGAATTGGTAAGAGATGCAGAAGCTAGGAAATTGCCTTC 299
Query 376 AGACAAAATTCCTGGATGGTTGGGACAATGGAAATCTCCTTGGGAAGGAAAAGTGAAAGG 435
|||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 300 AGACGAAATTCCTGGATGGTTAGGACAATGGAAATCTCCCTGGGAAGGAAAAGTGAAAGG 359
Query 436 TGGGGAGCTGATCAGGCAAGGGGAGGATGAGTTATACCAACTGGGAATTCGGGTTCGGGA 495
|||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 360 CGGGGAGCTGATCAGGCAAGGGGAGGAAGAGTTGTACCAACTGGGAATACGGGTTCGGGA 419
Query 496 ACGGTTTCCTAGTTTGTTTGAAGAGGATTACCATCCTGATGTCTATACAATAAGAGCTAC 555
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 AAGGTTTCCTAGTTTGTTTGAAGAGGATTACCACCCTGATGTCTATACAATAAGAGCTAC 479
Query 556 GCAGATTCCTAGGGCATCTGCAAGTGCTGTAGCATTTGGAATGGGGTTATTCAGTGAGAA 615
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCAGATTCCTCGGGCATCTGCAAGTGCTGTAGCATTTGGAATGGGGTTATTCAGTGAGAA 539
Query 616 AGGAAATCTGGGACCAGGCCGTAATAGAGCATTCGCTGTCACTAGCGAAAACCGTGCCAG 675
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 540 AGGAAATCTGGGACCAGGCCGTAATAGAGCATTCGCTGTCACAAGCGAAAACCGTGCAAG 599
Query 676 TGATACAAAGTTGAGATTTTTTGAATGTTGTCAAAACTACAAGAGCTATAGAAAAGCTAA 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGATACAAAGTTGAGATTTTTTGAATGTTGTCAAAACTACAAGAGCTATAGAAAAGCTAA 659
Query 736 AGAGCCTGCTGTGGATAAGCTCAAGGAACCTGTTCTGAATAAAATTACAGCTTCCGTTGC 795
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 660 AGAGCCTGCTGTGGATAAGCTCAAGGAACCTGTTCTGAATAAGATTACAGCTTCAGTTGC 719
Query 796 AAAGAGATATGATTTAAAATTCACGAAACAGGACATTTCTTCTCTCTGGTTTCTGTGCAA 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAAGAGATATGATTTAAAATTCACGAAACAGGACATTTCTTCTCTCTGGTTTCTGTGCAA 779
Query 856 GCAGGAAGCATCATTGCTTAATGTAACTAATCAAAGTTGTGAACTTTTCACGCCATCAGA 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCAGGAAGCATCATTGCTTAATGTAACTAATCAAAGTTGTGAACTTTTCACGCCATCAGA 839
Query 916 GGTTGCTTTGCTGGAATGGACAGATGATTTGGAAGTGTTTCTCCTCAAAGGTTATGGAAA 975
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 840 GGTTGCTTTGCTAGAATGGACAGATGACTTGGAAGTGTTTCTCCTCAAAGGTTATGGCAA 899
Query 976 TTCCTTGAATTACAAAATGGGAGTTCCACTTCTAGAAGATGTTTTGCATTCAATGGAAGA 1035
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 TTCCTTGAACTACAAAATGGGAGTTCCACTACTAGAAGATGTTTTGCATTCAATGGAAGA 959
Query 1036 AGCTATCAAGGCCCGGGAAGAAAAGCTCCCACCTGGAAGTTACGAAAAAGCAAGGCTTAG 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGCTATCAAGGCCCGGGAAGAAAAGCTCCCACCTGGAAGTTACGAAAAAGCAAGGCTTAG 1019
Query 1096 GTTTGCACATGCCGAAACAATAGTTCCCTTTTCTTGTCTTCTTGGGCTTTTCCTTGATGG 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTTTGCACATGCCGAAACAATAGTTCCCTTTTCTTGTCTTCTTGGGCTTTTCCTTGATGG 1079
Query 1156 ATCTGAGTTTGAGAAAATACAGAAGGAGAAACCTTTGGAACTCCCTCCACAGCCTCCCAA 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATCTGAGTTTGAGAAAATACAGAAGGAGAAACCTTTGGAACTCCCTCCACAGCCTCCCAA 1139
Query 1216 AACCAGGGATTTTAGAGGCAGCACCATGGCTCCTTTTGGTGGGAACAACATTCTTGTCCT 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AACCAGGGATTTTAGAGGCAGCACCATGGCTCCTTTTGGTGGGAACAACATTCTTGTCCT 1199
Query 1276 ATACAGTTGTCCCGCAGAATCCTCTCCCAAATACTTCGTTCAGGTTCTGCACAATGAGCA 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ATACAGTTGTCCCGCAGAATCCTCTCCCAAATACTTCGTTCAGGTTCTGCACAATGAGCA 1259
Query 1336 TCCTATTGCAGTGCCAGGTTGTGATGGAAAAGATTTCTGTCCTCTTGAAGATTTCAAGGC 1395
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1260 TCCTATTGCAGTTCCAGGTTGTGATGGAAAAGATTTCTGTTCTCTTGAAGATTTCAAGGC 1319
Query 1396 CAAAGTGGTAACTCCTCATCTAAAGCATGCTTTTGACAACCTTTGCAATGCTGATCTAAA 1455
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1320 CAAAGTGGTAACCCCTCATCTAAAGCATGCTTTTGACAACCTCTGCAATGCTGATCTAAA 1379
Query 1456 TGACCTGAAACAGAAGCCTGCATCAAGTAAGTTATCTATACTGTCAAGTTGGCTGTTTGG 1515
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TGACCTGAAAGAGAAGCCTGCATCAAGTAAGTTATCTATACTGTCAAGTTGGCTGTTTGG 1439
Query 1516 GTCAAGCCACGATACCGAGCTCTAG 1540
||||||||| |||||||||||||||
Sbjct 1440 GTCAAGCCAGGATACCGAGCTCTAG 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63534528660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5