BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09880.1
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910703 jgi|Araly1|910703|Al_scaffold_0001_957 2981 0.0
> Ahg910703 jgi|Araly1|910703|Al_scaffold_0001_957
Length=1995
Score = 2981 bits (1614), Expect = 0.0
Identities = 1807/1900 (95%), Gaps = 13/1900 (1%)
Strand=Plus/Plus
Query 2 TGGAGAATAG-ATTTTTACAATTAACTTTATCAAATCCTGAGGG-TTTCGTCACCGGAAT 59
|||||||| | |||||| |||||||||||||||||||||||||| ||| ||||| |||||
Sbjct 104 TGGAGAATGGAATTTTT-CAATTAACTTTATCAAATCCTGAGGGATTT-GTCACGGGAAT 161
Query 60 CCAGTATAATGGTATCGACAATGTGCTCGCCTACTACACCAACAAAGAATATGATAGAGG 119
|| ||| ||||||||||| |||||||||| | ||||| ||||||||||||||||||
Sbjct 162 CCGGTACAATGGTATCGAAAATGTGCTCG-C--GTACACGGGCAAAGAATATGATAGAGG 218
Query 120 TTACTGGGACGTAGTGTGGAACTTCCCTGGGAAAAAGGCTAAAAAGACCAAAGGCACACT 179
|||||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||| ||
Sbjct 219 TTACTGGGACTTAGTGTGGAACTTTCCTGGCAAAAAAGCTAAAAAGACCAAAGGCACGCT 278
Query 180 AGACCGGATTGAAGCAACAAAGATGGAAGTGATTACACAGAACGATGAGA-AAATAGAGC 238
|||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||
Sbjct 279 AGACCGGATTGAAGCAACAAAGATGGAAGTGATTACGCAGAACGATGA-ACAGATAGAGC 337
Query 239 TATCGTTTACAAGGACATGGAATACATCTTCAACTACGGCTGTTCCAGTGAATATAGACA 298
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 338 TATCGTTTACAAGAACATGGAATACGTCTTCAACGACGGCTGTTCCAGTGAATATAGACA 397
Query 299 AGAGGTTTGTAATGCTGCAAAACTCGTCCGGATTCTACAGTTACGCCATCTTCGAACGGT 358
|||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||
Sbjct 398 AGAGGTTTGTAATGCTGCGGAACTCCTCGGGATTCTACAGTTACGCCATCTTCGAGCGGT 457
Query 359 TACAAGGATGGCCCGCTGTTGAACTCGATAATATGCGATTAGTATTTAAGCTAAACAAGA 418
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TACAAGGATGGCCTGCTGTTGAACTCGATAATATGCGATTAGTATTTAAGCTAAACAAGG 517
Query 419 AAAAATTTCATTACATGGCGATTTCAGATGACAGGCAAAGGTACATGCCTGTGCCAGATG 478
| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 518 ACAAGTTTCATTACATGGCGATTTCAGATGACAGGCAAAGGTACATGCCTTTGCCAGATG 577
Query 479 ATCGGGTTCCGCCTCGTGGTCAGCCTCTTGCTTATCCCGAGGCAGTTCAACTTCTTGACC 538
||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 578 ATCGGATTCCGCCTCGTGGTCAACCTCTTGCTTATCCTGAGGCAGTTCAACTTCTCGACC 637
Query 539 CTATCGAGCCCGAGTTTAAAGGAGAGGTGGATGACAAGTATGAGTACTCAATGGAGAGTA 598
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 638 CTATTGAGCCCGAGTTTAAAGGAGAGGTGGATGACAAGTATGAATACTCAATGGAGAGTA 697
Query 599 AAGACATAAAAGTTCATGGATGGATAAGCACAAATGATTCAGTTGGGTTCTGGCAAATCA 658
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 698 AAGACATAAAAGTTCATGGATGGATAAGTACAAATGATTCAGTTGGGTTTTGGCAAATCA 757
Query 659 CTCCAAGCAATGAGTTCCGTTCTGCTGGGCCTCTCAAGCAATTCCTAGGCTCCCATGTCG 718
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 758 CTCCAAGCAACGAGTTCCGATCTGCTGGCCCTCTCAAGCAATTCCTAGGCTCCCATGTCG 817
Query 719 GTCCAACTAACCTTGCGGTATTTCACAGCACTCACTATGTTGGAGCAGACCTAATCATGA 778
||||||| ||||||||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 818 GTCCAACCAACCTTGCGATATTTCACAGTACTCACTATGTTGGAGCAGAACTAATCATGA 877
Query 779 GTTTTAAAAACGGTGAAGCATGGAAGAAAGTATTTGGACCTGTCTTCATTTATCTCAACT 838
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 878 GTTTTAAAAACGGTGAAGCATGGAAGAAAGTGTTTGGACCTGTCTTTATTTATCTCAACT 937
Query 839 CTTTTCCTAAAGGAGTTGATCCTCTCTTGCTCTGGCATGAAGCCAAGAACCAGACAAAGA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 CTTTTCCTAAAGGAGTTGATCCTCTCTTGCTCTGGCATGAAGCCAAGAACCAGACAAAGA 997
Query 899 TTGAAGAAGAAAAGTGGCCTTATAACTTCACCGCTTCAGATGATTTTCCTGCATCTGACC 958
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 TTGAAGAAGAGAAGTGGCCTTATAACTTCACCGCTTCAGATGATTTTCCTGCATCTGACC 1057
Query 959 AAAGAGGATCTGTTAGCGGTAGATTACTCGTAAGAGACAGATTCATAAGTAGTGAGGATA 1018
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1058 AAAGAGGATCTGTTAGCGGTAGATTAGTCGTAAGAGACAGATTCATAAGTAGTGAGGATA 1117
Query 1019 TACCTGCAAATGGTTCCTATGTGGGCTTGGCTGCACCAGGAGATGTTGGCTCATGGCAAA 1078
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1118 TACCTGCAAATGGTTCCTATGTGGGCTTGGCTGTACCAGGAGATGTTGGCTCATGGCAAA 1177
Query 1079 GAGAATGCAAAGGTTATCAATTCTGGTCTAAAGCAGACGAAAATGGATCTTTTTCTATCA 1138
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1178 GAGAATGCAAAGGTTATCAATTCTGGTCTAAAGCAGACGAAAATGGATATTTTTCTATCA 1237
Query 1139 ATAATGTGAGAAGTGGTCGTTATAATCTCTATGCATTTGCTCCGGGATTCATCGGTGATT 1198
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1238 ATAATGTGAGAAGTGGTCGTTATCATCTCTATGCATTTGCTCCGGGATTCATCGGTGATT 1297
Query 1199 ACCACAACGACACCGTTTTTGACATTTCTCCAGGCTCAAAGATTAGCTTAGGAGACTTAG 1258
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1298 ACCACAACGACACTGTTTTTGACATTTCTCCAGGCTCAAAGATTAGCCTAGGAGACTTGG 1357
Query 1259 TGTATGAGCCTCCTAGAGACGGTTCAACTCTATGGGAAATCGGTGTACCAGACCGAAGCG 1318
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 TGTATGAACCTCCTAGAGACGGTTCAACTCTATGGGAAATCGGTGTACCAGACCGAAGCG 1417
Query 1319 CTGCAGAGTTCTACATTCCTGACCCGAATCCAAGCTTTGTAAACAAACTATACTTAAACC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 CTGCAGAGTTCTACATTCCTGACCCGAATCCAAGCTTTGTAAACAAACTATACTTAAACC 1477
Query 1379 ATTCTGATAAATATC-GACAATACGGATTGTGGGAACGCTATTCAGAACTGTACCCCGAT 1437
|||||||||||| || ||||||| |||||||||||||| ||||||||| |||||||||||
Sbjct 1478 ATTCTGATAAAT-TCCGACAATATGGATTGTGGGAACGATATTCAGAATTGTACCCCGAT 1536
Query 1438 GAAGATATGGTCTACAATGTTGATATTGATGACTACTCTAA-AAACTGGTTCTTCATGCA 1496
|||||||||||||||||||||||| |||||| |||||||| ||| ||||||||||||||
Sbjct 1537 GAAGATATGGTCTACAATGTTGATGCTGATGATTACTCTAAGAAA-TGGTTCTTCATGCA 1595
Query 1497 AGTTACAAGGAAGCAAGCAAATGGAGGATATAAAGGTACAACATGGCAGATCAGATTTCA 1556
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1596 AGTTACAAGGAAGCACGCAAATGGTGGATATAACGGTACAACATGGCAGATCAGATTTCA 1655
Query 1557 GTTCGACGATAAAATGAAAAACGTAACCGGAAACTTCAAACTGCGAATCGCTTTAGCCAC 1616
||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||
Sbjct 1656 ATTCGACGATAAAATGAAAAACTTAACCGGAAACTTCAAACTTCGAATCGCTCTAGCAAC 1715
Query 1617 ATCAAACGTAGCAGAATTGCAGGTTCGGGTGAACGATCTTTCTGCAGACCCTCCATTGTT 1676
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1716 ATCAAATGTAGCAGAATTGCAGGTTCGGGTGAACGATCTTTCTGCAGATCCTCCATTGTT 1775
Query 1677 TAGGACAGAGCAAATAGGAAGGGATAATACAATCGCAAGGCATGGTATTCATGGACTATA 1736
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 TACGACAGAGCAAATAGGAAGGGATAATACAATCGCAAGGCATGGTATTCATGGACTATA 1835
Query 1737 TTGGTTATATAGTGTGAATGTTCCTGCTGCTTCTCTTCACGTGGGAAATAACACCATATA 1796
||||||||| | ||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1836 TTGGTTATACAATGTGAATGTGCCTGCTGCTTCTCTTCACCTGGGAAATAACACCATATA 1895
Query 1797 TCTAACTCAAGCGCTCGCCACAAGCCCTTTTCAAGGACTCATGTATGATTATATTCGTCT 1856
|||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1896 TCTAACTCAACCGCTCGCCACGAGTCCTTTTCAAGGACTCATGTATGATTATATTCGTCT 1955
Query 1857 TGAATATCCTGATTCCATCAATTATATTACTAGATCATAG 1896
|||||||||||||||||||||||||||||||| |||||||
Sbjct 1956 TGAATATCCTGATTCCATCAATTATATTACTAAATCATAG 1995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5