BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09932.1
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312036 jgi|Araly1|312036|fgenesh1_pm.C_scaffold_1000816 1175 0.0
> Ahg312036 jgi|Araly1|312036|fgenesh1_pm.C_scaffold_1000816
Length=780
Score = 1175 bits (636), Expect = 0.0
Identities = 738/787 (94%), Gaps = 7/787 (1%)
Strand=Plus/Plus
Query 83 ATGGATTTATGTGGAACTCAGATGCTGCGCCTCTCATCGCCTCATTTCAAAACCCTTCAT 142
||||||||||||||| || ||| ||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGATTTATGTGGAGCT---ATGTTGCGCCTCTCATCGCCTAATTTCAAAACCCTTCAT 57
Query 143 TTGGTGAGGCATGCACAAGGAGTCCACAATATAGCATTAGAAGAGAAGGGAGAGAAACCT 202
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 58 TTGGTGAGGCATGCACAAGGAATCCACAATATAGCATTAGAAGAGGAGGGAGAGAAACCT 117
Query 203 GAATCAGAAAAGCTTTTTGACGCCCACCTTTCTCCAAAGGGTTTGCAACAGGTTTCGGAA 262
|||||||||||||| ||||| ||||| || |||||||| ||||||||||||||||| |||
Sbjct 118 GAATCAGAAAAGCTGTTTGATGCCCAACTCTCTCCAAAAGGTTTGCAACAGGTTTCTGAA 177
Query 263 AGGCGCAACCAAATCCTTGAATCAGGATTACTTAACACTGTCGAGTTAGTGATAACCTCT 322
|||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 178 AGGCGCAACCAAATCCTTGAATCAGGATTACTAAACACTATCGAGTTAGTGATTTCCTCT 237
Query 323 CCGCTGTGCAGAGCAATGGAAACTTCAATAGGAATATTTAGGGGACAAGGATATGTAAAT 382
|||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 238 CCGCTGCGCAGAGCAATGGAAACTTCAATAGGAATATTTAGGGGGCAAGAAGATGTAAAT 297
Query 383 ATATCCGAAGACTTTGCAAAAGCTAACAACTTCCCTCCAATTGTAGCACTTGAGATCTGT 442
|||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 298 ATATCCGACGACTTTCCAAAAGCTAACAACTTTCCTCCAATTGTAGCACTTGAGATCTGT 357
Query 443 AGAGAACGCATGGGACTCTATCCATGTGATCGTAGAGCAAGTATAAGTACTCGCCGCACt 502
|||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 358 AGAGAACGGATGGGACTCTATCCGTGTGATCGTAGAGCAAGTATAACTACTCGCCGCACT 417
Query 503 ttttttCCTGAGATCGACTTTACAATGATAGAGAGTGATGAAGACGCTCTATGGCAAGAC 562
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 418 TGTTTTCCTGAGATCGACTTTACAATGATAGAGAGTGATGAAGATGCTCTATGGCAAGAC 477
Query 563 AAGGAAAGGGAAAAATTAGAAGATGTTGCTACTAGAGGTCTTCACTTTGTTAAATGGTTA 622
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAGGAAAGGGAAAAACTAGAGGATGTTGCTACTAGAGGTCTTCACTTTGTTAAATGGTTA 537
Query 623 TGGGAGAGACCAGAAAAAGAGATAGCAATTGTAAGCCACGGGATTTTCTTGCAACAAACA 682
||||||||||||||||| || ||||||||||| ||||| ||||||||| |||||||||||
Sbjct 538 TGGGAGAGACCAGAAAACGAAATAGCAATTGTGAGCCATGGGATTTTCCTGCAACAAACA 597
Query 683 CTTTGTGCGCTGCATGGAAAAGTTGGCATACCTCTTGAAGATAGTCTCCTTACAAGGTTT 742
||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 CTTCGTGCGCTGCATGAAAAAGTTGGCATACCTCTTGAAGATAGTCTCCTTACTAGGTTT 657
Query 743 GCCAATTGTGAACTCCGGTCGATTCGGATAGAGAAGAGTGACATGGAAGCGGATACATTA 802
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 658 GCCAATTGTGAACTCCGGTCAATTCGGATAGAAAAAAGTGACATGGAAGCGGATACATTA 717
Query 803 ATGACTTGTAACTGTAGAAATTACGTTACTCCACCTTCAACTTCCTTCCATTCACACGCT 862
| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 ACGACTTGTAATTGTAGAAATTACGTTACTCCACCTTCAACTTCC----ATTCACACGCT 773
Query 863 TGAATAG 869
|||||||
Sbjct 774 TGAATAG 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42163946202
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5