BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G09935.1 Length=696 Score E Sequences producing significant alignments: (Bits) Value Ahg910709 jgi|Araly1|910709|Al_scaffold_0001_963 1138 0.0 > Ahg910709 jgi|Araly1|910709|Al_scaffold_0001_963 Length=711 Score = 1138 bits (616), Expect = 0.0 Identities = 672/699 (96%), Gaps = 3/699 (0%) Strand=Plus/Plus Query 1 ATGGATGCAAGATTCTTGTACCCCTTGGAGAGCTGTAAAATCATTCACTTGTTGCGACAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 13 ATGGATGCAAGATTCTTGTACCCCTTGGAGAGCTGTAAAATCATTCACTTGTTGAGACAT 72 Query 61 GGACAAGCGTTGCACAATGTAGAAGCTGAGAAAGATAGAAATGCGTTGTTGTCTCCTCAT 120 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 73 GGACAAGCGTTGCACAATGTAGAAGCCGAGAAGGATAGAAATGCGTTGTTGTCTCCTCAT 132 Query 121 CTTTTTGATGCTCCGCTTACCGATCATGGTCACCAACAGGTTGAGAATCTCCGCGAACGA 180 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 133 CTTTTTGATGCCCCGCTTACCGATCATGGTCACCAACAGGTTGAGAATCTCCGCGAACGA 192 Query 181 GTTGTTTCAAGCGGGCTACTAAAGAGGGTTGAGCTAGTTGTAACTTCTCCGTTGTTTAGA 240 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 193 GTTGTTTTAAGCGGGCTACTAAAGAGGGTTGAGCTAGTTGTAACTTCTCCGTTGTTTAGA 252 Query 241 ACTATGCAAACCGCAGTTGGTGTTTTTGGAAATGAATACAAACAATCGAGTATGACAAGT 300 |||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| | Sbjct 253 ACTATGCAAACCGCAGTTGGAGTTTTTGGAAATGAATACGAACAACCGAGTATGACAAAT 312 Query 301 AGCCCTCCCATTTTGGCACTTGAGGTTGCTCGAGACCGTAATGGAGTCCGTCCTCCTGAC 360 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 313 AGCCCTCCCATTTTGGCACTTGAGGTCGCTCGAGACCGTAATGGAGTCCGTCCTCCTGAC 372 Query 361 ATGAGAAGAAACGTTAGCGAGTATCAAACTCTTTTCCCCACCATCGATTTCTCTCAGATT 420 |||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 373 ATGAGAAGAAACATTAGCGAGTATCAAACTCTTTTCCCGACCATTGATTTCTCTCAGATT 432 Query 421 GAAAGTGAAGAGGACAACCTATGGAGACCGGATGTTAGGGAGTCCGAAGAGGAGATTTTG 480 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 433 GAAAGTGAAGAGGACAACCTATGGAGACCGGATGTTAGAGAGTCCGAAGAAGAGATTTTG 492 Query 481 GCGAGAGGGTTAGAGTTCATGAAATGGTTATGGAAGAGGCCAGAGAAGGAGGTCGCAGTT 540 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 493 GCAAGAGGGTTAGAGTTCATGAAATGGTTATGGAAGAGACCAGAGAAGGAGGTCGCAGTT 552 Query 541 GTTAGCCATGGAATAGTTTTGCAGCATATGTTGTATGTGTTTGCAAACGATTGTGACCTG 600 ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | Sbjct 553 GTTAGCCATGGAATAGTTTTGCAGCATATGTTGTATGTGTTCGCAAGCGATTGTGACGAG 612 Query 601 TCAATTAGACATGAACTTTGCAAGAGGTTTGCCAATTGCGAAATTCGTACTGTCGTGATT 660 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 613 TCAATTAGACATGAACTTTGCAAGAGGTTTGCTAATTGCGAAATTCGTACTGTCGTGATT 672 Query 661 GTAGACAAAGGCATG--GC-TTCATCTACGGAGAATTGA 696 ||||||||||||||| | |||| |||||||||||||| Sbjct 673 GTAGACAAAGGCATGATGAGTTCACCTACGGAGAATTGA 711 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25580477307 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5