BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09935.1
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910709 jgi|Araly1|910709|Al_scaffold_0001_963 1138 0.0
> Ahg910709 jgi|Araly1|910709|Al_scaffold_0001_963
Length=711
Score = 1138 bits (616), Expect = 0.0
Identities = 672/699 (96%), Gaps = 3/699 (0%)
Strand=Plus/Plus
Query 1 ATGGATGCAAGATTCTTGTACCCCTTGGAGAGCTGTAAAATCATTCACTTGTTGCGACAT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 13 ATGGATGCAAGATTCTTGTACCCCTTGGAGAGCTGTAAAATCATTCACTTGTTGAGACAT 72
Query 61 GGACAAGCGTTGCACAATGTAGAAGCTGAGAAAGATAGAAATGCGTTGTTGTCTCCTCAT 120
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 73 GGACAAGCGTTGCACAATGTAGAAGCCGAGAAGGATAGAAATGCGTTGTTGTCTCCTCAT 132
Query 121 CTTTTTGATGCTCCGCTTACCGATCATGGTCACCAACAGGTTGAGAATCTCCGCGAACGA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 CTTTTTGATGCCCCGCTTACCGATCATGGTCACCAACAGGTTGAGAATCTCCGCGAACGA 192
Query 181 GTTGTTTCAAGCGGGCTACTAAAGAGGGTTGAGCTAGTTGTAACTTCTCCGTTGTTTAGA 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 GTTGTTTTAAGCGGGCTACTAAAGAGGGTTGAGCTAGTTGTAACTTCTCCGTTGTTTAGA 252
Query 241 ACTATGCAAACCGCAGTTGGTGTTTTTGGAAATGAATACAAACAATCGAGTATGACAAGT 300
|||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |
Sbjct 253 ACTATGCAAACCGCAGTTGGAGTTTTTGGAAATGAATACGAACAACCGAGTATGACAAAT 312
Query 301 AGCCCTCCCATTTTGGCACTTGAGGTTGCTCGAGACCGTAATGGAGTCCGTCCTCCTGAC 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 313 AGCCCTCCCATTTTGGCACTTGAGGTCGCTCGAGACCGTAATGGAGTCCGTCCTCCTGAC 372
Query 361 ATGAGAAGAAACGTTAGCGAGTATCAAACTCTTTTCCCCACCATCGATTTCTCTCAGATT 420
|||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 373 ATGAGAAGAAACATTAGCGAGTATCAAACTCTTTTCCCGACCATTGATTTCTCTCAGATT 432
Query 421 GAAAGTGAAGAGGACAACCTATGGAGACCGGATGTTAGGGAGTCCGAAGAGGAGATTTTG 480
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 433 GAAAGTGAAGAGGACAACCTATGGAGACCGGATGTTAGAGAGTCCGAAGAAGAGATTTTG 492
Query 481 GCGAGAGGGTTAGAGTTCATGAAATGGTTATGGAAGAGGCCAGAGAAGGAGGTCGCAGTT 540
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 493 GCAAGAGGGTTAGAGTTCATGAAATGGTTATGGAAGAGACCAGAGAAGGAGGTCGCAGTT 552
Query 541 GTTAGCCATGGAATAGTTTTGCAGCATATGTTGTATGTGTTTGCAAACGATTGTGACCTG 600
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
Sbjct 553 GTTAGCCATGGAATAGTTTTGCAGCATATGTTGTATGTGTTCGCAAGCGATTGTGACGAG 612
Query 601 TCAATTAGACATGAACTTTGCAAGAGGTTTGCCAATTGCGAAATTCGTACTGTCGTGATT 660
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 613 TCAATTAGACATGAACTTTGCAAGAGGTTTGCTAATTGCGAAATTCGTACTGTCGTGATT 672
Query 661 GTAGACAAAGGCATG--GC-TTCATCTACGGAGAATTGA 696
||||||||||||||| | |||| ||||||||||||||
Sbjct 673 GTAGACAAAGGCATGATGAGTTCACCTACGGAGAATTGA 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25580477307
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5