BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09940.1
Length=2114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471105 jgi|Araly1|471105|fgenesh2_kg.1__1059__AT1G09940.1 2907 0.0
Ahg933667 jgi|Araly1|933667|scaffold_401655.1 1397 0.0
Ahg475445 jgi|Araly1|475445|fgenesh2_kg.2__575__AT1G58290.1 1227 0.0
> Ahg471105 jgi|Araly1|471105|fgenesh2_kg.1__1059__AT1G09940.1
Length=2008
Score = 2907 bits (1574), Expect = 0.0
Identities = 1879/2020 (93%), Gaps = 45/2020 (2%)
Strand=Plus/Plus
Query 37 TCAATGGTCTTGAATTGACCTGTTCTTAAAACCCGACCCGGATCCACCTGCTTCTTTCAA 96
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAATGGTGTTGAATTGACCCGTTCTTAAAACCCGACCCGGATCCACCTGCTTCTTTCAA 60
Query 97 CTAACACACGCTCCTGATCCAAACCAttttttc-atttttCAAATCATTATC---AACTC 152
|||||||||||||||||||| ||||| ||||| | | ||||||||||| || ||
Sbjct 61 CTAACACACGCTCCTGATCCTAACCA--TTTTCAAGTCAAAAAATCATTATCAATAATTC 118
Query 153 T-CTCGCTTCTTCAACGATCGCATAAATTCCCTCTTTGTCTGCTCGATTCCTGATCTCTA 211
| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TCCT-TCTTCTTCAAC-ATCGCATAAATTCCCTCTTTGTCTGCTCGATTCCTGATCTCTA 176
Query 212 GGGTTTGGGTTCCGGAGACGAAGGGGGTGTTTCGTGTGTAATTGAGATATTGAGATTATT 271
|||||||||||| |||||||||| |||||||| |||| | || |||||||||||
Sbjct 177 GGGTTTGGGTTCTGGAGACGAAGAGGGTGTTT--TGTG----T---AT-TTGAGATTATT 226
Query 272 GCTTTGTAAAACTC-AAAATCTATGGCGGTTTCTAGCGCCTTCGTTGTTACACCGAAGCT 330
|||||||||||||| |||||||||||||||||||| | |||||||||||||||| |||||
Sbjct 227 GCTTTGTAAAACTCAAAAATCTATGGCGGTTTCTACCTCCTTCGTTGTTACACCAAAGCT 286
Query 331 GGAGAAGCTGTTAGCGAATCACCATAATCCAACGTATTCTTCTTCTCCGGCCCCGTTGGA 390
|||||| ||||| | || ||||||||| |||||||||||||| |||||||
Sbjct 287 GGAGAATTTGTTA--G-----CC--AATCCAACG---TCTTCTTCTCCGGCGCCGTTGGG 334
Query 391 TGTAATTGGGATACGTGCTCTTCCGATG---AACAATAGGAACAAGCGAGGTCTGATCCA 447
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 335 TGTAATTGGGATTCGTGCTCTTCCGATGAACAACAATAGGAACAAGCGAGGTCTGATCCA 394
Query 448 GAGAGCGCGTTGCGAGATTTCTCCGTCTAATAAGGCAGCTAGCATCTCAGCTCTCGAGCA 507
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 395 GAGAGCCCGTTGCGAGATTTCTCCGTC---TAAGGCAGCTAGCATCTCAGCTCTCGAGCA 451
Query 508 GCTCAAGACTTCTGCTATTGACCGATACACTAAGGAAAGAAGCAGCATTGTGGTGATTGG 567
||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 452 GCTTAAGACTTCTGCTATTGACCGATACACTAAGGAAAGAAGCAGCATTATTGTGATTGG 511
Query 568 GCTTAGCATTCACACAGCTCCTGTTGAGATGCGTGAGAAGCTTGCCATTCCAGAAGCTGA 627
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 512 GCTTAGCATCCACACAGCTCCTGTTGAGATGCGTGAGAAGCTTGCTATTCCAGAAGCTGA 571
Query 628 ATGGCCACGAGCTATTGCTGAATTGTGTGGTTTGAATCATATTGAAGAAGCTGCTGTACT 687
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 572 ATGGCCACGAGCGATCGCTGAATTGTGTGGTTTGAATCATATTGAAGAAGCTGCTGTCCT 631
Query 688 CAGTACCTGCAACCGAATGGAGATTTATGTTTTGGCTCTATCTCAGCATCGTGGAGTCAA 747
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 632 CAGTACCTGCAACCGAATGGAGATTTATGTCTTGGCTCTATCACAGCATCGTGGAGTCAA 691
Query 748 AGAAGTGACTGAGTGGATGTCTAAGACAAGTGGAATCCCGGTTTCAGAAATCTGTCAGCA 807
|||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 692 AGAAGTTACTGAGTGGATGGCTAAGACAAGTGGAATCCCGGTTTCCGAAATCTGTCAGCA 751
Query 808 TCGTTTTCTATTGTACAACAAGGATGTCACGCAACATATATTTGAAGTCTCAGCTGGTCT 867
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 752 TCGTTTTCTATTGTACAACAAGGACGTCACACAACATATATTTGAAGTCTCAGCTGGTCT 811
Query 868 AGACTCTCTTGTCCTAGGTGAAGGTCAGATACTTGCACAGGTTAAACAAGTTGTTAAAGT 927
|||||| |||||| |||| ||| |||||||||||||||||||||||||||||| |||||
Sbjct 812 AGACTCCCTTGTCATAGGAGAAAATCAGATACTTGCACAGGTTAAACAAGTTGTGAAAGT 871
Query 928 AGGTCAAGGAGTCAATGGTTTTGGGAGGAATATCAGTGGGCTATTTAAACACGCAATCAC 987
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 872 AGGTCAAGGAGTCAATGGGTTTGGGAGGAACATTAGTGGGCTATTTAAACACGCAATCAC 931
Query 988 AGTTGGAAAGCGTGTCAGAACAGAGACAAATATCGCTGCTGGGGCTGTTTCCGTTAGCTC 1047
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 932 AGTTGGGAAGCGTGTCAGAACAGAGACAAATATCGCTGCTGGGGCTGTTTCTGTTAGCTC 991
Query 1048 GGCTGCAGTTGAACTTGCTCTCATGAAGCTTCCCGAATCTTCTCATGCATCATCTGCTAG 1107
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 992 GGCTGCAGTCGAACTTGCTCTCATGAAACTTCCCGAATCTTCTCATGCATCATCTGCTAG 1051
Query 1108 GATGTTGGTAGTTGGTGCTGGAAAGATGGGGAAGCTTGTAATCAAGCACTTGGTTGCTAA 1167
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1052 GATGTTGGTAATTGGTGCTGGAAAGATGGGAAAGCTTGTAATCAAGCACTTGGTTGCTAA 1111
Query 1168 AGGTTGCACCAAAATGGTGGTTGTGAATCGAAGCGAAGAGAAAGTTGCAGCTGTCCGCAA 1227
||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |
Sbjct 1112 AGGTTGCACCAAAATGGTGGTTGTGAATCGAAGTGAAGAGAAAGTTGCAGCTATTCGCGA 1171
Query 1228 TGAGATGCCGCCTGGCGTTGAGATTATTTATAAACCCCTTGATGAGATGCTGTCTTGTGC 1287
|||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1172 GGAGATGCCATATGGTGTTGAGATTATTTATAAACCCCTTGATGAGATGCTATCTTGTGC 1231
Query 1288 TGCAGAAGCTGATGTAGTCTTTACTAGCACAGCATCTGAGACACCATTATTCTTGAAGGA 1347
|| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1232 AGCTGAAGCCGATGTAGTCTTTACTAGCACAGCTTCTGAGACACCATTATTCTTGAAGGA 1291
Query 1348 GCAAGTAGAGACTCTCCCTCCTGTTAGAGATGCGAGGCTCTTTGTTGATATCTCTGTTCC 1407
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1292 GCAAGTAGAGACTCTCCCTCCTGTTAGAGATACGAGACTCTTTGTTGATATCTCTGTTCC 1351
Query 1408 TAGAAATGTCGGGTCCTGCGTCGCTGAAATAGACGGTACACGGGTTTTCAACGTGGATGA 1467
||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1352 TAGAAATGTCGGGTCTTGCGTCGCTGAAATAGATGGTGCACGGGTTTTCAACGTGGATGA 1411
Query 1468 CCTCAAGGAAGTCGTTGCTGCGAATAAAGAAGACAGGGTGAGGAAAGCAATGGACGCTCA 1527
|||||||||||||||| |||| ||| |||||||||||||||||||||||||||| |||||
Sbjct 1412 CCTCAAGGAAGTCGTTACTGCAAATCAAGAAGACAGGGTGAGGAAAGCAATGGAAGCTCA 1471
Query 1528 GGCTATAATTACAGATGAATCAAAACACTTTGAAGCGTGGAGGGACTCGTTGGAGACGGT 1587
||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||
Sbjct 1472 GGCTATAATTACAGATGAATCGAAACACTTTGAAGCATGGAGGGATTCGCTGGAGACGGT 1531
Query 1588 TCCAACAATCAAGAAATTAAGGGGATATACAGAGAGAATTATAGCTGCAGAGATTGAGAA 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 TCCAACAATCAAGAAATTAAGGGGATATACAGAGAGAATTATAGCTGCAGAGATTGAGAA 1591
Query 1648 ATCCTTGCCCAAAAT-GGGCATTGACATGAACAAGAAGATGAGGAAAA-CAGTAGATGAT 1705
|| |||| || |||| ||||||||| |||||||||||| ||| ||||| |||||||||||
Sbjct 1592 ATTCTTG-CCGAAATCGGGCATTGAGATGAACAAGAAGTTGA-GAAAATCAGTAGATGAT 1649
Query 1706 CTAATCCGAGGTATAGTGAACAAGCTCCTGCACGGTCCAATGCAGCATTTGAGATGCGAT 1765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 CTAATCCGAGGTATAGTGAACAAGCTCCTGCACGGTCCAATGCAGCATTTGAGATGCGAT 1709
Query 1766 GGGAACGATAGCAGAACGCTGAGTGAGACACTAGATAACATGCAGGCTCTGAACAGGATG 1825
|||| |||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 1710 GGGAGCGATAGCAGAACACTGAGTGAGACACTGGAGAACATGCAGGCTCTGAACAGGATG 1769
Query 1826 TATGGACTTGATGCAGAGATACTCGAGGAGAAGATTAGAGCAAAGGTGGaaaaaaaGTAG 1885
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1770 TATGGACTTGATGCAGAGATACTCGAGGAGAAGATTAGAGCAAAGGTGGGAAAAAAGTAG 1829
Query 1886 AGAGAAGAGAGCCTTTGTTTCATCCATTTTTTAGGTTCGTAGAGGTTAAAAACCGGCACC 1945
||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1830 AGAAAAGAGAGCCTTTGTTGCATCCATTTTTTAGGTTCGTAGAGGTTAAAAATCGGCACC 1889
Query 1946 TTTGTAATATACACACTTGAGTAGAGGGTGAAGACAGCCTCTGG-GGAAGATGATCTTCT 2004
||||||||||||| |||||||||||| ||||||| || ||||| ||| || ||||||||
Sbjct 1890 TTTGTAATATACAAACTTGAGTAGAGAGTGAAGATAGTTTCTGGTGGA-GAAGATCTTCT 1948
Query 2005 GGTTCATGCCCTTGATGGGAAGCATACCATAATTGTTTTA 2044
|||||||||||||||||||||||||||||||||| |||||
Sbjct 1949 GGTTCATGCCCTTGATGGGAAGCATACCATAATT-TTTTA 1987
> Ahg933667 jgi|Araly1|933667|scaffold_401655.1
Length=1630
Score = 1397 bits (756), Expect = 0.0
Identities = 1391/1680 (83%), Gaps = 114/1680 (7%)
Strand=Plus/Plus
Query 270 TTGCTTTGTAAAACTCAAAATCTATGGCGGTTTCTAGCGCC--T-TCGTTGTTA-CACCG 325
|||| |||| |||| | ||| ||||||||||||||| ||| | | ||||||| | |||
Sbjct 1 TTGC-TTGT-AAACAC-AAAGCTATGGCGGTTTCTAATGCCTTTGTTGTTGTTAGC-CCG 56
Query 326 AAGCTGGAGA-A--G-C-T-GT--T-AGCGAATCACCATAATCCAACGTATTCTTCTTCT 376
| |||| ||| | | | | || | | |||||||||||||| | ||| ||||||||||
Sbjct 57 ATGCTGAAGACATCGTCGTCGTCGTCATCGAATCACCATAAT-C--CGTCTTCTTCTTCT 113
Query 377 CCGGCCCCGTTGGATGTAATTGGGATACGTGCTCTTCCGATGAACAATAGGAACAAG-CG 435
|||| || | ||| | | |||| | | ||||| |||||||||||||| ||||| |
Sbjct 114 CCGG-ACC--T-GAT-T-A---GGATTCATACTCTTTCGATGAACAATAGG-ACAAGAAG 163
Query 436 AGGTCTGATCCAGAGAGCGCGTTGCGAGATTTCTCCGTCTAATAAGGCAGCTAGCATCTC 495
|||||||||||||||||||||||||||| ||| |||||| || | | || || ||
Sbjct 164 AGGTCTGATCCAGAGAGCGCGTTGCGAGCTTTGTCCGTC---CAACG-A-CT--CA--TC 214
Query 496 AGCTCTCG-AGCAGCTCAAGACTTCTGCT---ATTGACCGATACACTAA-GGAAAGAAGC 550
||||| | | ||||| |||| |||| || | |||| ||||||| || ||| ||||||
Sbjct 215 GGCTCT-GAACCAGCTTAAGAATTCTCCTACAAATGACAGATACAC-AAGGGAGAGAAGC 272
Query 551 AGCATTGTGGTGATTGGGCTTAGC-ATTCACACAGCTCCTGTTGAGATGCGTGAGAAGCT 609
|||||||||||||||||||||||| || |||| |||| || | |||||||||||||||||
Sbjct 273 AGCATTGTGGTGATTGGGCTTAGCTAT-CACAAAGCTACTCTAGAGATGCGTGAGAAGCT 331
Query 610 TGCCATTCCAGAAGCTGAATGGCCACGAGCTATTGCTGAATTGTGTGGTTTGAATCATAT 669
||||||||| |||||||||||||||||||||||| || | ||||| | ||||||||| ||
Sbjct 332 TGCCATTCCTGAAGCTGAATGGCCACGAGCTATTACTCAGTTGTGCGCTTTGAATCACAT 391
Query 670 TGAAGAAGCTGCTGTACTCAGTACCTGCAACCGAATGGAGATTTATGTTTTGGCTCTATC 729
||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||| ||
Sbjct 392 TGAAGAAGCTGCTGTTCTCAGTACCTGCAACCGTATCGAGATTTATGTTTCCGCTCTTTC 451
Query 730 TCAGC-ATCGTGGAGTCAAAGAAGTGACTGAGTGGATGTCTAAGACAAGTGGAATCCCGG 788
|| || | ||||| ||||||||||| ||||| ||||||||||||| ||||||||| || |
Sbjct 452 TC-GCCACCGTGGTGTCAAAGAAGTCACTGACTGGATGTCTAAGAGAAGTGGAATTCCAG 510
Query 789 TTTCAGAAATCTGTCAGCATCGTTTTCTATTGTACAACAAGGATGTCACGCAACATATAT 848
|||| || |||||||| || || ||||| ||||||||||| || | ||| |||||| |||
Sbjct 511 TTTCTGACATCTGTCATCACCGGTTTCTGTTGTACAACAAAGACGCCACACAACATCTAT 570
Query 849 TTGAAGTCTCAGCTGGTCTAGACTCTCTTGTCCTAGGTGAAGGTCAGATACT-TGCACAG 907
|| ||||||| |||||||| || ||||||||| |||| ||| |||||||| | |||||
Sbjct 571 TTCAAGTCTCCGCTGGTCTGGAATCTCTTGTCATAGGAGAAAATCAGATACAAT-CACAG 629
Query 908 GTTAAACAAGTTGTTAAAGTAGGTCAAGGAGTCAATGGTTTTGGGAGGAATATCAGTGGG 967
||||||||||||| ||||||| | || | ||| ||||| ||||||| |||||||| |
Sbjct 630 GTTAAACAAGTTGAGAAAGTAGTTAAACAA--CAAGGGTTT-GGGAGGATTATCAGTGCG 686
Query 968 CTATTT-AAACACGCAATCACAGT-TGGAAAGCGTGTCAGA-ACAGAGACAAATATCGC- 1023
|||||| ||| | ||||||| || |||||||||||||||| | ||||||||| |||||
Sbjct 687 CTATTTGAAA-AGGCAATCA-AGGCTGGAAAGCGTGTCAGAGA-AGAGACAAACATCGCG 743
Query 1024 TGCTGGGGCTGTTTCCGTTAGCTCGGCTGC-AGTTGAACTTGCTCTCA-TGAAGCTTCCC 1081
| |||||||||||||||||||||| ||||| | | ||||||||||||| | ||||||||
Sbjct 744 T-CTGGGGCTGTTTCCGTTAGCTCTGCTGCCA-TCGAACTTGCTCTCACT-AAGCTTCCA 800
Query 1082 GAATCTTCTCATGCATCATCTGCTAGGATGTTGGTAGTTGGTGCTGGAAAGATGGGGAAG 1141
| |||| | || |||| | |||| |||||||||| ||||||| |||| ||||||||||
Sbjct 801 GGATCTG-T-AT-CATC-T--GCTATGATGTTGGTAATTGGTGCAGGAACGATGGGGAAG 854
Query 1142 CTTGTAATCAAGCACTTGGTTGCTAAAGGTTGCACCAAAATGGTGGTTGTGAATCGAAGC 1201
||||||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 855 CTTGTAATCAAGCACCTGGTTGCTAAAGGTTGCACTGAAATGGTGGTTATGAACCGAAGC 914
Query 1202 GAAGAGAAAGTTGCAGCTGTCCGCAATGA-GATGCCGCCTGGCGTTGAGATTATTTATAA 1260
||||||||||||||||| ||||| | || |||||||||||||||| ||||||| ||||
Sbjct 915 CAAGAGAAAGTTGCAGCTATCCGCGA-GAAGATGCCGCCTGGCGTTAAGATTATCTATAG 973
Query 1261 ACCCCTT-GATGAGATGCT-GTCTTGTGCTGCAGAAGCTGATGTAGTCTTTACTAGCACA 1318
|||| || ||||||||||| | |||||||| ||||||| | ||| ||||||||||||||
Sbjct 974 ACCC-TTAGATGAGATGCTAG-CTTGTGCTTCAGAAGCCAACGTAATCTTTACTAGCACA 1031
Query 1319 GCATCTGAGACACCATTATTCTTGAAGGAGCAAGTAGAGACTC-TCCCTCCT-GT--T-- 1372
||||||||||||||||| |||||||||||||| ||||||| || |||||||| || |
Sbjct 1032 GCATCTGAGACACCATTGTTCTTGAAGGAGCACGTAGAGA-TCCTCCCTCCTTGTCCTGC 1090
Query 1373 AGA-G-A--TGCGAGGCTCTTTGTTGATATCTCTGTTCCTAGAAATGTCGGGTCCTGCGT 1428
||| | | ||||||||||||||||||||||||||||||||||||||| || || || ||
Sbjct 1091 AGATGTAGATGCGAGGCTCTTTGTTGATATCTCTGTTCCTAGAAATGTTGGCTCTTGTGT 1150
Query 1429 CGCTGAAATAGACGGTACACGGGTTTTCAACGTGGATGACCTCAAGGAAGTCGTTGCTGC 1488
|||||| ||||| || ||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1151 AGCTGAATTAGACAGTGCACGGGTTTACAACGTGGATGACCTCAAGGAAGTTGTTGCTGC 1210
Query 1489 GAATAAAGAAGACAGGGTGAGGAAAGCAATGGACGCTCAGGCTATAATTACAGATGAATC 1548
|||| |||||||||| ||||||||||||||| |||| || |||||| ||||| || ||
Sbjct 1211 CAATATGGAAGACAGGGCGAGGAAAGCAATGGAAGCTCGGGATATAATAACAGAGGAGTC 1270
Query 1549 AA-AACACTTTGAAGCGTGGAGGGACTCGTTGGAGACGGTTCCAACAATCAAGAAATTAA 1607
|| || | ||||||| ||||||||| ||| || | || |||||||||||||||||||||
Sbjct 1271 AATAA-AGTTTGAAGGGTGGAGGGATTCGATG-A--CGTTTCCAACAATCAAGAAATTAA 1326
Query 1608 GGGG-ATATACAGAGAGAATTATAGCTGCAGA-GATTGAGAAATCCTTGCCCAAA-ATGG 1664
| | | | ||||||| ||| | |||||| | | |||| |||| | || | ||| ||||
Sbjct 1327 GAAGCAAA-ACAGAGAAAATCAGAGCTGCTGCTG-TTGAAAAATTCATGTCGAAATATGG 1384
Query 1665 GCATTGACATGAACAAGAAGATGAGGAAAACAGTAGATGA-TCTAATCCGAG-GTATAGT 1722
|| |||||| ||||||||| |||| || ||||||| || | ||| || || | |||||
Sbjct 1385 -CAAAGACATGGACAAGAAGACGAGGGAAGCAGTAGA-GAATGTAACCCTAGAG-ATAGT 1441
Query 1723 GAACAAGCTCCTGCACGGTCCAATGCAGCATTTGAGATGCGATGGGAAC-GATAGCAGAA 1781
||||| | ||||||||| |||||| | ||||||||||||||||||| | ||||||||||
Sbjct 1442 GAACAGGATCCTGCACGACCCAATGAAACATTTGAGATGCGATGGGA-CTGATAGCAGAA 1500
Query 1782 CGCTG-AGTGAGACACTAGATAACATGCAGGCTCTGAACAGGATGTATGGACTTGATGCA 1840
|||| | |||||| ||||| |||||||||||| ||||||| ||||||| ||| || |||
Sbjct 1501 TGCTGCA-TGAGACTCTAGAGAACATGCAGGCTGTGAACAGAATGTATGAACTCGACGCA 1559
Query 1841 GAGATACTCGAGGAGAAGATTAGAGCAAAG--GTGGaaa-aaaaGTAGAGAGA-AGAGAG 1896
||| ||||||||||||||||||||||||| | || || ||||||||||||| ||||||
Sbjct 1560 GAGTTACTCGAGGAGAAGATTAGAGCAAAAAAGAGGGAACAAAAGTAGAGAGAGAGAGAG 1619
> Ahg475445 jgi|Araly1|475445|fgenesh2_kg.2__575__AT1G58290.1
Length=2047
Score = 1227 bits (664), Expect = 0.0
Identities = 1182/1428 (83%), Gaps = 52/1428 (4%)
Strand=Plus/Plus
Query 478 TAAGGCAGCTAGCATCTCAGCTCTCGAGCAGCTCAAG-ACTTCTGCTATTGACCGATACA 536
||| || || |||||||| ||||| || || |||||| || ||||| | ||| |||| |
Sbjct 335 TAATGCTGCAAGCATCTCTGCTCTTGAACAACTCAAGAAC-TCTGCAACTGATAGATATA 393
Query 537 CTAAGGAAAGAAGCAGCATTGTGGTGATTGGGCTTAGCATTCACACAGCTCCTGTTGAGA 596
| |||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 394 CAAAGGAAAGAAGCAGTATTGTTGTGATTGGACTTAGTATTCACACAGCTCCTGTTGAGA 453
Query 597 TGCGTGAGAAGCTTGCCATTCCAGAAGCTGAATGGCCACGAGCTATTGCTGAATTGTGTG 656
|||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| |
Sbjct 454 TGCGTGAGAAGCTTGCTATACCAGAAGCTGAATGGCCAAGAGCTATTGCTGAATTGTGCG 513
Query 657 GTTTGAATCATATTGAAGAAGCTGCTGTACTCAGTACCTGCAACCGAATGGAGATTTATG 716
||||||||||||| ||||||||||| || || ||||| || || || |||||||||||||
Sbjct 514 GTTTGAATCATATCGAAGAAGCTGCGGTGCTTAGTACTTGTAATCGTATGGAGATTTATG 573
Query 717 TTTTGGCTCTATCTCAGCATCGTGGAGTCAAAGAAGTGACTGAGTGGATGTCTAAGACAA 776
|||| ||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 574 TTTTAGCTTTATCTCAGCATCGTGGAGTTAAAGAAGTGACTGAGTGGATGTCAAAGACGA 633
Query 777 GTGGAATCCCGGTTTCAGAAATCTGTCAGCATCGTTTTCTATTGTACAACAAGGATG-TC 835
|||| ||||| ||||| || || ||| |||| |||||||| |||||||||||||||| |
Sbjct 634 GTGGGATCCCTGTTTCGGAGATTTGTGAGCACCGTTTTCTGTTGTACAACAAGGATGCT- 692
Query 836 ACGCAACATATATTTGAAGTCTCAGCTGGTCTAGACTCTCTTGTCCTAGGTGAAGGTCAG 895
|| || |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 693 ACACAGCATATATTTGAAGTCTCAGCTGGTCTTGACTCTCTTGTCCTAGGAGAAGGTCAG 752
Query 896 ATACTTGCACAGGTTAAACAAGTTGTTAAAGTAGGTCAAGGAGTCAATGGTTTTGGGAGG 955
|| ||||||||||| ||||||||||| ||||| || |||||||| ||||| |||||||||
Sbjct 753 ATTCTTGCACAGGTGAAACAAGTTGTGAAAGTTGGCCAAGGAGTGAATGGCTTTGGGAGG 812
Query 956 AATATCAGTGGGCTATTTAAACACGCAATCACAGTTGGAAAGCGTGTCAGAACAGAGACA 1015
|||||||| ||| | ||||||||||| || || ||||| |||||||| ||||||||||||
Sbjct 813 AATATCAGCGGGTTGTTTAAACACGCGATAACTGTTGGTAAGCGTGTTAGAACAGAGACA 872
Query 1016 AATATCGCTGCTGGGGCTGTTTCCGTTAGCTCGGCTGCAGTTGAACTTGCTCTCATGAAG 1075
|| || ||| ||||||| ||||| |||||||| ||||| |||||||||||||| ||||||
Sbjct 873 AACATTGCTTCTGGGGCGGTTTCGGTTAGCTCAGCTGCTGTTGAACTTGCTCTGATGAAG 932
Query 1076 CTTCC-CGAATCTTCTCATGCATCATCTGCTAGGATGT-TGGTAGTTGGTGCTGGAAAGA 1133
||||| | ||||||| || ||||| | |||||||||| || || |||| |||||||| |
Sbjct 933 CTTCCGC-AATCTTCACACGCATC-T--GCTAGGATGTGTG-TAATTGGCGCTGGAAAAA 987
Query 1134 TGGGGAAGCTTGTAATCAAGCACT-TGGTTGCTAAAGGTTGCACCAAAA-TGGTGGTTGT 1191
||||||||||||| || ||||| | || | ||||| |||||||| |||| ||||||| ||
Sbjct 988 TGGGGAAGCTTGTGATTAAGCA-TATGATGGCTAAGGGTTGCAC-AAAAGTGGTGGTGGT 1045
Query 1192 GAATC-GAAGCGAAGAGAAAGTTGCAGCTGTCCGCAATGAGATGCCGCCTGGCGTTGAGA 1250
|| | |||| ||||||| |||| ||||| | || | ||||||||| || ||||||
Sbjct 1046 CAA-CAGAAGTGAAGAGAGAGTTTCAGCTATTCGTGAGGAGATGCCG---GGTATTGAGA 1101
Query 1251 TTATTTATAAACCCCTTGATGAGATGCT-GTCTTGTGCTGCAGAAGCTGATGTAGTCTTT 1309
|||| ||| ||| |||||||||||||| | |||||||||||||||| ||||| || |||
Sbjct 1102 TTATATATCGACCTCTTGATGAGATGCTAG-CTTGTGCTGCAGAAGCGGATGTTGTGTTT 1160
Query 1310 ACTAGCACAGCATCTGAGACACCATTATTCTTGAAGGAGCAAGTAGAGACTCTCCCTCCT 1369
|| |||||||| |||||||| ||||| ||||| |||||||| || |||||||||||||
Sbjct 1161 ACCAGCACAGCTTCTGAGACGCCATTGTTCTTAAAGGAGCATGTGGAGACTCTCCCTCAA 1220
Query 1370 G-TT----AGAGAT-G-----C-GAGGCTCTTTGTTGATATCTCTGTTCCTAGAAATGTC 1417
| || |||| | | | |||||| |||||||| ||||||||||| |||||||||
Sbjct 1221 GCTTCTCCAGAGGTTGGAGGACTGAGGCTTTTTGTTGACATCTCTGTTCCGAGAAATGTC 1280
Query 1418 GGGTCCTGCGTCGCTGAAATAGA--CGGTACACGGGTTTTCAACGTGGATGACCTCAAGG 1475
|| || || || | |||| |||| | | | ||||||| ||| ||||| || ||||| |
Sbjct 1281 GGATCTTGTGTTGGTGAAGTAGAAACCG--CGCGGGTTTACAATGTGGACGATCTCAAAG 1338
Query 1476 AAGTCGTTGCTGCGAATAAAGAAGACAGGGTGAGGAAAGCAATGGACGCTCAGGCTATAA 1535
|||| |||||||| || |||||||||||| |||||||||||||||| ||||| | ||||
Sbjct 1339 AAGTTGTTGCTGCCAACAAAGAAGACAGGTTGAGGAAAGCAATGGAAGCTCAAACCATAA 1398
Query 1536 TTACAGATGAATCAAAACACTTTGAAGCGTGGAGGGACTCGTTGGAGACGGTTCCAACAA 1595
| ||||| ||||| | ||| |||||||| |||||||| || ||||||||||||||||| |
Sbjct 1399 TCACAGAGGAATCCACACAGTTTGAAGCATGGAGGGATTCATTGGAGACGGTTCCAACGA 1458
Query 1596 TCAAGAAATTAAGGGGATATACAGAGAGAATTATAGCTG-CAGAGATTGAGAAATCCTTG 1654
||||||| ||||| | ||| |||||||||| | || || ||||| | ||||| | | ||
Sbjct 1459 TCAAGAAGTTAAGAGCTTATGCAGAGAGAATCAGAG-TGGCAGAGCTAGAGAAGTGCATG 1517
Query 1655 CCCAAAATGGGC-ATTGACATGAACAAGAAGATGAGGAAAA-CAGTAGATGATCT-AATC 1711
|||||||||| || ||||| |||||||| | | || | | || ||||| || || |
Sbjct 1518 TCCAAAATGGGAGAT-GACATCAACAAGAAAACAAC-AAGAGCGGTTGATGA-CTTAAGC 1574
Query 1712 CGAGGTATAGTGAACAAGCTCCTG-CACGGTCCAATGCAGCATTTGAGATGCGATGGGAA 1770
|||||||| ||||||| | | || || ||||||||||||||||||||||| || ||||
Sbjct 1575 CGAGGTATTGTGAACA-GATTCTTACATGGTCCAATGCAGCATTTGAGATGTGACGGGAG 1633
Query 1771 CGATAGCAGAACGCTGAGTGAGACACTAGATAACATGCAGGCTCTGAACAGGATGTATGG 1830
||||| |||||||| || ||||| || || || ||||| ||| ||||||| ||||| ||
Sbjct 1634 TGATAGTAGAACGCTAAGCGAGACCCTTGAGAATATGCATGCTTTGAACAGAATGTACGG 1693
Query 1831 ACTTGATGCA-GAGATACTCGAGGAGAAGATTAGAG-CAAAGGTGGaa 1876
||||| | | || || | ||||| ||| ||| || ||| || ||||
Sbjct 1694 GCTTGA-GAAAGACATTTTGGAGGAAAAGCTTA-AGGCAATGGCGGAA 1739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79532431560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5