BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09950.1
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471106 jgi|Araly1|471106|fgenesh2_kg.1__1060__AT1G09950.1 1254 0.0
> Ahg471106 jgi|Araly1|471106|fgenesh2_kg.1__1060__AT1G09950.1
Length=941
Score = 1254 bits (679), Expect = 0.0
Identities = 863/946 (91%), Gaps = 35/946 (4%)
Strand=Plus/Plus
Query 92 ATGCCAAACACTAGCAGCTCTCAAAGCTTCACTA-TCTTCGTTGA-TGGTTGGTTAATCC 149
|||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||||
Sbjct 1 ATGCCAAACACTAGCAGCTCTCAAAGCTTCACTAGT-TTCGTT-ACTGGTTGGTTAATCC 58
Query 150 GTCACAGGTATTTCGTTGAACAGCTTATGTGTGCTTCTTCCTTGGATGAAACTAATCGTA 209
|||||||||||||||| |||||||||| ||| ||||| |||||||||||||||| ||||
Sbjct 59 GTCACAGGTATTTCGTCGAACAGCTTACGTGCGCTTCCCCCTTGGATGAAACTAACCGTA 118
Query 210 TCTCTCTCGAAGAACAACAATCTCTCGTGGCCCAGTTTCTATCTCACTGTCTTCAATACT 269
||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||||
Sbjct 119 TCTCTCTCGAAGATCAACAATCTCTTGTGACCCAGTTTCTTTCTCACTGTCTTCAATACT 178
Query 270 ACCAAGAGAAATTCGCCTCCGTTTCCCTCGCCGGGGACAACGTTTTCACTTTCTTCTGCC 329
||||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||
Sbjct 179 ACCAAGAGAAATTCGCCGCCGTTTCCGTCGCCGGTGACAACGTTTTCACGTTCTTCTGCC 238
Query 330 CACCGTGGTTTAACTCCTACGCTAAACTTATTTTATGGGTCGGCGATTTCAAGCCTTCTC 389
|||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct 239 CACCGTGGTTTAACTCCTACGCTAAACTCATTCTCTGGGTCGGCGATTTCAAGCCTTCTC 298
Query 390 TTGTGTTTAAACTCACCGAGGTCTCCGTGGCCGACCTCACGCGCCACCAGAAAGACCGGA 449
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 299 TTGTGTTTAAACTCACCGAGGTCTCCGTGGACAACCTCACGCGCCACCAGAAAGACCGGA 358
Query 450 TCTCGAGTCTTAAGTCGGAGACTAGGAGGAAAGAGAGAGAAGTTATGCGAGATTTCGCCC 509
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 TCTCGAGTCTTAAGTCGGAGACTAGGAGGAAAGAGAGAGAAGTGATGCGAGATTTCGCCC 418
Query 510 TCGTGCAACAAAGCGTGGCGGATCCGCCGGTGATGCTCGCGGCGAGGCGCGTGGGAGCGG 569
|||||||||| || ||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 419 TCGTGCAACAGAGTGTGGCGGATCCGCCGGTGATGCTCGCGGCGAGGAGAGTCGGAGCGG 478
Query 570 TGGGAATGGTGGACGGAGAAGAAACGGATTTGGAGGAGGCGATGGAGGTGCTTAAAGCTG 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGGGAATGGTGGACGGAGAAGAAACGGATTTGGAGGAGGCGATGGAGGTGCTTAAAGCTG 538
Query 630 GGATGGCGGCAGCGATGAACAACGCTGATCAGCTACGGTGTTCGACGGTGGGGAAAGTGG 689
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 GGATGGCGGCGGCGATGAACAACGCAGATCAGCTACGGTGTTCGACGGTGGGGAAAGTGG 598
Query 690 TGGAGATTCTTACTCCGCCGCAAGCGATTAAAGTGTTGAGGACAATCGGACAGCTTCACC 749
||||||| |||||||||||||||||||| |||||||||| |||||||||| |||||||||
Sbjct 599 TGGAGATACTTACTCCGCCGCAAGCGATAAAAGTGTTGAAGACAATCGGAGAGCTTCACC 658
Query 750 TCCGTCTGAGAGA--------C--AGAGA--CCAAGAAAGAGCTTaaaaaaaaaGATACT 797
||||||||||||| | ||||| ||| |||||||||| |||| ||||||||
Sbjct 659 TCCGTCTGAGAGAAGTGAATTCGGAGAGAGACCACCAAAGAGCTTAGAAAAGAAGATACT 718
Query 798 TAATTTGCTTTGC-TCTGCTTCTTCAACAACGATGGAGTCATCACTAATTTTTGTTTTTC 856
| |||||||||| | ||||||||||||||| |||||||| | |||||||||||| ||||
Sbjct 719 TGCTTTGCTTTGCGT-TGCTTCTTCAACAACAATGGAGTCGTGACTAATTTTTGTGTTTC 777
Query 857 GGGCTCAACCACTTGATCCTGagatttagatttccttttggtgatttatgatttttaaaa 916
||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 778 GGGGTCATCCACTTGATCCTGAGATTTAGATTTCCTTTTGATGATTTATGATTTTAAAAA 837
Query 917 gatttgagaa---ttgggcttttttgtttgTAGTG----A--T-AT--GATGTCATGttt 964
|||||||||| ||||||| |||||||||||||| | | || |||||| |||||
Sbjct 838 GATTTGAGAAGAATTGGGCTGTTTTGTTTGTAGTGGTTTAAGTGATATGATGTCTTGTTT 897
Query 965 t-tt--atttttGGCTTCTCGTTTCTTCCTTAAATCAGTTCTTACT 1007
| || |||||||||||| |||||||||||||||||||||| |||
Sbjct 898 TGTTTTATTTTTGGCTTC--GTTTCTTCCTTAAATCAGTTCTAACT 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38199162834
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5