BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09980.1
Length=3159
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919770 jgi|Araly1|919770|scaffold_101051.1 4163 0.0
Ahg475399 jgi|Araly1|475399|fgenesh2_kg.2__529__AT1G58350.1 2080 0.0
> Ahg919770 jgi|Araly1|919770|scaffold_101051.1
Length=2449
Score = 4163 bits (2254), Expect = 0.0
Identities = 2384/2449 (97%), Gaps = 0/2449 (0%)
Strand=Plus/Plus
Query 435 AGGTGATGTGAGTTCTCCATATGTTACGCCGTCTTGGATGGTTAATTGGACTGAGCCAAA 494
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 AGGTGATGTGAGTTCTCCATATGTTACGCCGTCTTGGATGGTTAATTGGACTTAGCCAAA 60
Query 495 GAAGTAGGCAAACAAAGTCGATTGATGCTGAGCCTTACGTAGCCAGGGTTAAGCCAGTGC 554
||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 61 GAAGTAGGCAAACTAAGTCGCTTGATGCTGAGCCTTACGTAGCCAGGGTTAAGCCGGTGC 120
Query 555 TAATGATCGACACTGTTCAGGAGATTGCTATCTATATCCATAGGTTTCATAACCTTGATC 614
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TAATGGTCGACACAGTTCAGGAGATTGCTATCTATATCCATAGGTTTCATAACCTTGATC 180
Query 615 TTTTCCAGCAAGGATGGTATCAAATAAAAATCAGCATGAGATGGGAGGATGGTGACAACA 674
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 181 TTTTCCAGCAAGGATGGTATCAAATAAAAATTAGCATGAGATGGGAGGATGGTGATAACA 240
Query 675 ACTCCTGTGGAATTCCTTCACGAGTTGTTCAGTATGAAGCGCTTGATTCAACCTCAAACG 734
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 ATTCCTGTGGAATTCCTTCACGAGTTGTTCAGTATGAAGCTCTTGATTCAACCTCAAACG 300
Query 735 ACTCATATGGAGTGTGGAAGATAGATGATAAGGATAGTAGTTTCTTAACACAGCCCTTCC 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACTCATATGGAGTGTGGAAGATAGATGATAAGGATAGTAGTTTCTTAACACAGCCCTTCC 360
Query 795 GCATTAAATATGCAAGGCAGGATGTTCGTCTCTGCATGATGGTCTCATTTACTATGCCTC 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCATTAAATATGCAAGGCAGGATGTTCGTCTCTGCATGATGGTCTCATTTACTATGCCTC 420
Query 855 TGGAAAGATATGAGGGGTCAGCTACATCGGCTGTTATATTGAAGTTTGAGCTTTTGTATT 914
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 421 TGGAAAGATACGAGGGGTCAGCTACATCTGCTGTTATATTGAAATTTGAGCTTTTGTATT 480
Query 915 CTCCAATCATGGAGGATATACCTGTGACACATTCAGATGCTTGTGCTGCGGCAGTGCATG 974
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 481 CTCCAATCATGGAGGATATACCAGTGACACATTCAGATGCTTGTCCTGCGGCAGTGCATG 540
Query 975 AATTTCGTATTCCTCCTAAAGCTCTTTCAGGCGTGCATTCTTACTGTCCAGTGCACTTTG 1034
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 AATTTCGTATTCCTCCTAAAGCTCTTTCAGGCGTGCATTCTTACTGTCCCGTGCACTTTG 600
Query 1035 ATACCTTTCACGCGGTTCTTATCGATGTAAGTGTCCACGTCAGCGTCATGAAATCCGCTG 1094
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 601 ATACCTTTCACGCGGTTCTTATAGATGTAAGTGTCCACGTCAGCGTCATGAAATCTGCTG 660
Query 1095 CTTACAAACGGCCTGCAATTTTATCAAGTGATGCGAGTAATGGTAAAAATTTGACCAGTG 1154
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 661 CTTACAAACGGCCTGCAATTTTATCAAGTGATGCGAGTAATGGTAAAAACTTGGCCAGCG 720
Query 1155 GCAATATTCAGTCTTCCAAAAAAGCCTTTACTCAAATCGCTTCTGCTGACAAGAAGCTGG 1214
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCAATGTTCAGTCTTCCAAAAAAGCCTTTACTCAAATCGCTTCTGCTGACAAGAAGCTGG 780
Query 1215 TGTCATTTGTAAAAGCCTTACTCGGAGCTCGTGACACTTTGCTTGAAGAAATGCAAAGGC 1274
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGTCATTTGTGAAAGCCTTACTCGGAGCTCGTGACACTTTGCTTGAAGAAATGCAAAGGC 840
Query 1275 TTAGCAAAGCAGTTGGTCAAACAGTTGACTTGTCTGAGTTTGTATCCAGTATGGACAATG 1334
||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 841 TTAGCAAGGCAGTTGGTCAAACAATTGACTTGTCTGACTTTGTATCCAGTATGGACAATG 900
Query 1335 CTCTTTTATCTGACTCAGGTTCAACGGGAAAATCTGTTGAAGTTGAAGGTTCAGGACAAG 1394
|||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||
Sbjct 901 CTCTTTTATCTGACTCAGCTTCAACGGGGAAATCTGTTGAAGTTGAAGGTTCTGGACAAG 960
Query 1395 GCAAGCTACAAAACAATCTTGAGAAGTTGAATGGCCCATTTGATTTAGCAAGTGATGACT 1454
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GCAAGCAACAAAACAATCTTGAGAAGTTGAATGGCCCATTTGATTTAGCAAGTGATGACT 1020
Query 1455 GGCTTCACAACTTCTCAAAGGAGCATCTATCTCGCACATTCCACTTACTGGGCACCCAGC 1514
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1021 GGCTTCACAACTTCTCAAAGGAGCATCTATCTCGCACATTCCACTTACTAGGCACCCAGC 1080
Query 1515 TCCATTATCTATGGAATACCTTTCTGACATTGCACCGGGATAATTACACAAAAATCTTGG 1574
|||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1081 TCCATTATCTTTGGAATACCTTTCTGACATTTCATCGGGATAATTACACGAAAATCTTGG 1140
Query 1575 AATATCTTCGCGATATCTGGACTAAAGATCGAAGAGCGGAATGGTCAATATGGATGGTGT 1634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AATATCTTCGCGATATCTGGACTAAAGATCGAAGAGCGGAATGGTCAATATGGATGGTGT 1200
Query 1635 ACTCCAAGGTTGAAATGCCACATCATTTTATAAGTGGAATGGAGGACATTTCAAACCATA 1694
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1201 ACTCCAAGGTTGAAATGCCACATCATTTTATAAGTGGAATGGACGACATTTCAAACCATA 1260
Query 1695 GTTCACACAAAAGAGTCTCGACTGGGTTGAAGCTGAATGATCCTGCACAAGTTGCATCCA 1754
||||||||||||||||||| | || |||||||| |||||||||||||||||||||| |||
Sbjct 1261 GTTCACACAAAAGAGTCTCAAGTGTGTTGAAGCCGAATGATCCTGCACAAGTTGCAGCCA 1320
Query 1755 CCCGCGCTGAACTTCACCGTCGAAGTATTGCACAAATGCGGATAAACAACCGGGCAATAC 1814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CCCGCGCTGAACTTCACCGTCGAAGTATTGCACAAATGCGGATAAACAACCGGGCAATAC 1380
Query 1815 AAGACATGCATATATTTGGTGATCCTATGCGGGTTCCTATAGTTATAATTGAACGTGTTT 1874
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1381 AAGACATGCATATATTTGGTGATCCTATGCGAGTTCCTATAGTTATAATTGAACGTGTTT 1440
Query 1875 GGAATGCACCAAGGCGTACGTTCAGTGATAATTCGTACATGAGACATGTTGATAGAATCG 1934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GGAATGCACCAAGGCGTACGTTCAGTGATAATTCGTACATGAGACATGTTGATAGAATCG 1500
Query 1935 ATTCTAGCTTACTTAATGGGCATGATGATGAGAGTGGGACGAAAAAACATATTAACCCAC 1994
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1501 ATTCTAGCTTACTTAATGGGCATGATGATGAGAGTGGGACGAAAAAACATAACAACCCAC 1560
Query 1995 AGCATACTGGGCGTGAGCTGAAGATTGTTGTTTTTGTTCATGGTTTCCAGGGGCATCACT 2054
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1561 AGCATACTGGGCGTGAGCTGAAGATCGTTGTTTTTGTTCATGGTTTCCAGGGGCATCACT 1620
Query 2055 TAGACCTAAGGCTTATCCGGAATCAGTGGCTCCTAATTGATCCAAAGATAGAGTTTCTCA 2114
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TAGACCTAAGGCTTATACGGAATCAGTGGCTCCTAATTGATCCAAAGATAGAGTTTCTCA 1680
Query 2115 TGTCTGAGGCAAATGAGGAGAGAACACATGGCGATTTTAGGGAAATGGGTCAGAGGCTTG 2174
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1681 TGTCTGAGGCAAATGAGGAGAAAACACATGGCGATTTTAGGGAAATGGGTCAGAGGCTTG 1740
Query 2175 CGCAGGAAGTTGTTTCTTTTTTCAAGAGGAAAAAGGATAAACATGCGAGATACGGGCGCT 2234
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1741 CGCAGGAAGTTGTTTCTTTTTTCAAGAGGAAAAAGGATAAACATGCGAGATATGGGCGCT 1800
Query 2235 TGAAAAACATCAAGCTGAGTTTTGTTGGACATTCAATTGGTAACGTCATCATCAGAGCTG 2294
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1801 TGAAAAACATTAAGCTGAGTTTTGTTGGACATTCAATCGGTAACGTCATCATCAGAGCTG 1860
Query 2295 CAATAGCTGATAGTTTGATGGATCCATACAGGAAGTATTTTCATACATATATATCGCTTT 2354
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1861 CAATAGCTGATAGTTTGATGGATCCATACAGGAAGTATTTTCATACATATCTATCGCTTT 1920
Query 2355 CGGGTCCACACTTGGGTTATCTATACAGTTCAAATTCCTTGTTTAATTCTGGACTTTGGC 2414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 CGGGTCCACACTTGGGTTATCTATACAGTTCAAATTCCTTGTTTAATTCTGGACTTTGGC 1980
Query 2415 TCCTGAAGAAGTTAAAGAGTACTCAGGTTATTCATCAGCTTACACTCACAGATGATCCTG 2474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 TCCTGAAGAAGTTAAAGAGTACTCAGGTTATTCATCAGCTTACACTCACAGATGATCCTG 2040
Query 2475 ATCTCCAGAATACTTTCTTTTACAAGCTCTGCAAGCAAAAGACGTTGTGCAGTTTCAAGA 2534
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 2041 ATCTCCAGAATACTTTCTTTTACAAGCTCTGCAAGCAAAAGACGTTGGGGAGTTTCAAGA 2100
Query 2535 ATATAATTCTCCTGTCTTCGCCTCAGGATGGGTATGTTCCATATCACTCAGCTAGGATTG 2594
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2101 ATATAATTCTCCTGTCTTCGCCTCAGGATGGGTATGTTCCATATCACTCAGCCAGGATTG 2160
Query 2595 AGTCATGCCAACCAGCTTCTTTCGACAACTCAAAAAGAGGTGTTGCTTTCTTGGAGATGC 2654
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2161 AGTCGTGCCAACCAGCTTCTTTTGACAACTCAAAAAGAGGTGTTGCTTTCTTGGAGATGC 2220
Query 2655 TTAATAACTGTATGGACCAAATACGTGGGCCATCCCCTGAAACTCCGCACCACCAGAGAG 2714
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2221 TTAATAACTGTATGGACCAAATACGTGGGCCATCCCCTGAAACTCCTCACCACCAGAGAG 2280
Query 2715 TGTTCATGCGCTGTGATGTCAACTTCGACACAACCTTGTATGGTCGTAACCTGAACTCAT 2774
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2281 TGTTCATGCGCTGCGATGTCAACTTCGACACAACCTTGTATGGTCGTAACCTGAACTCAT 2340
Query 2775 TCATCGGCCGTGCTGCTCACATCGAGTTTTTGGAGTCTGATGTCTTTGCAAGATTCATAA 2834
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 2341 TCATCGGCCGTGCTGCTCACATCGAGTTCTTGGAGTCTGATATCTTTGCAAGATTCATAA 2400
Query 2835 TGTGGTCATTCCAAGATCTATTCCGCTGACAAATCTTGGTTTGTGGAGA 2883
||||||||||||||||||||||||||||| |||||| ||| ||||||
Sbjct 2401 TGTGGTCATTCCAAGATCTATTCCGCTGATGAATCTTAATTTATGGAGA 2449
> Ahg475399 jgi|Araly1|475399|fgenesh2_kg.2__529__AT1G58350.1
Length=2968
Score = 2080 bits (1126), Expect = 0.0
Identities = 2027/2448 (83%), Gaps = 117/2448 (5%)
Strand=Plus/Plus
Query 452 CATATGTTACGCCGTCTTGGATGGTTAATTGGACTGAGCCAAAGAAGTAGGCAAACAAAG 511
|||||||||| ||||||| |||||||||||||| |||| |||||||||| ||| |||||
Sbjct 415 CATATGTTACACCGTCTTAGATGGTTAATTGGATTGAGTAAAAGAAGTAGACAAGCAAAG 474
Query 512 TCGATTGATGCTGAGCCTTACGTAGCCAGGGTTAAGCCAGTGCTAATGATCGACACTGTT 571
|| |||||||| | |||||| |||||| |||||||||||| || ||| | ||||| |||
Sbjct 475 ACGCTTGATGCTAAACCTTACATAGCCAAGGTTAAGCCAGTACTGATGGTTGACACGGTT 534
Query 572 CAGGAGATTGCTATCTATATCCATAGGTTTCATAACCTTGATCTTTTCCAGCAAGGATGG 631
|| |||||||| || |||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 535 CAAGAGATTGCGATTTATATCCACCGGTTTCATAACCTTGATCTTTTCCAACAAGGATGG 594
Query 632 TATCAAATAAAAATCAGCATGAGATGGGAGGATGGTGACAAC--AACTCCTGTGGAATTC 689
|||||||| ||||||| |||||||||||||||||| || ||| |||| | | || ||||
Sbjct 595 TATCAAATCAAAATCACCATGAGATGGGAGGATGGAGATAACGTAACT-C-GGGGTATTC 652
Query 690 CTTCACGAGTTGTTCAGTATGAAGC-GCTTGATTCAACCTCAAACGACTCATATGGAGTG 748
|||||||||| |||||||||||||| | ||| || || || ||||| || ||||||
Sbjct 653 CTTCACGAGTCGTTCAGTATGAAGCTAC-TGAATCCGGTTCTAATGACTCGTACGGAGTG 711
Query 749 TGGAAGATAGATGATAAGGATAGTAGTTTCTTAACACAGCCCTTCCGCATTAAATATGCA 808
|||| ||||| |||||| |||| |||||||||||||||||||||||| || |||||||||
Sbjct 712 TGGAGGATAGTTGATAAAGATAATAGTTTCTTAACACAGCCCTTCCGTATCAAATATGCA 771
Query 809 AGGCAGGATGTTCGTCTCTGCATGATGGTCTCATTTACTATGCCTCTGGAAAGATATGAG 868
|||||||| ||||| | || |||||| ||||||||||| |||| |||||| ||||||||
Sbjct 772 CGGCAGGATATTCGTTTGTGTATGATGATCTCATTTACTCTGCCACTGGAACGATATGAG 831
Query 869 GGGTCAGCTACATCGGCTGTTATATTGAAGTTTGAGCTTTTGTATTCTCCAATCATGGAG 928
|| ||||||||||| |||| |||||| ||||||||||| ||||| |||| || || |
Sbjct 832 GGATCAGCTACATCTGCTGCTATATTAAAGTTTGAGCTCATGTATGCTCC-TTC-TGTA- 888
Query 929 GAT-AT--ACCTGTGACA-CATTCAGATGCTTGTGCTGCGGCAGTGCATGAATTTCGTAT 984
||| || | | | || | |||| |||||||| | ||| ||||| ||||| || |||||
Sbjct 889 GATAATGCATCAGCGA-AGCATTTAGATGCTTCTTCTGTTGCAGTTCATGAGTTCCGTAT 947
Query 985 TCCTCCTAAAGCTCTTTCAGGCGTGCATTCTTACTGTCCAGTGCACTTTGATAC-CTTTC 1043
|||||||||||||||| ||||| |||||||||||||||||||||| |||||||| | |||
Sbjct 948 TCCTCCTAAAGCTCTTACAGGCTTGCATTCTTACTGTCCAGTGCATTTTGATACAC-TTC 1006
Query 1044 ACGCGGTTCTTATCGATGTAAGTGTCCACGTCAGCGTCA-TGAAATCCGCTGCTTACAAA 1102
| ||||||||| ||||||| ||||||||| |||| || | ||||||| ||||| || |||
Sbjct 1007 ATGCGGTTCTTGTCGATGTGAGTGTCCACATCAGTGT-ATTGAAATCGGCTGCGTATAAA 1065
Query 1103 CGGCCTGCAATTTTATCAAGTGATGCG--AGTAATGGTAAAAATTTGACCAGTGGCA--A 1158
|| |||||| | ||||||||| ||| ||||| ||||||| || |||||||| |
Sbjct 1066 CGACCTGCACGTCTATCAAGTG--GCGTAAGTAACAGTAAAAA--TG-TCAGTGGCAGCA 1120
Query 1159 -TATTCAGTCTTCCAAAAAAGC-CTTTACTCAAATCGCTTCTGCTGACAAGAAGCTGGTG 1216
||| |||| || ||||| | || | | ||||||||||| ||||| ||||||
Sbjct 1121 GCGCTCAATCTTTTAAGAAAGCAC-TTGGTTTGCTTGCTTCTGCTGATAAGAAACTGGTG 1179
Query 1217 TCATTTGTAAAAGCCTTACTCGGAGCTCGTGACACTTTGCTTGAAGAAATGCAAAGGCTT 1276
|||||||| ||||| ||||| |||||||||| | ||| || || ||||||||||| |||
Sbjct 1180 TCATTTGTCAAAGCATTACTTGGAGCTCGTGGTATTTTACTCGAGGAAATGCAAAGACTT 1239
Query 1277 AGCAAAGCAGTTGGTCAAACAG-TTGACTTGTCTGAGTTTGTATCCAGTATGGACAATGC 1335
||||| |||||||||||||| | | ||||||||||| |||||||| | ||| |||||
Sbjct 1240 AGCAAGGCAGTTGGTCAAAC-GATAGACTTGTCTGACTTTGTATCAAACATGAACAATAT 1298
Query 1336 TCTTTTATCTGACTCAGGTTCAACGGGAAAATCTGTTGAAGTTGAAGGTTCAGGACAAGG 1395
|| ||||| | | ||||| || || | | ||||||||||||||
Sbjct 1299 TCCCTTATC--A---A-ACTCAAC-----AA----TT--A----ACGGTTCAGGACAAGG 1337
Query 1396 CAAGCTACAAAACAATCTTGAGAAGTTGAATGGCCCATTTGATTTAGCAAGTGATGACTG 1455
|||| |||||||| |||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 1338 CAAGGAACAAAACAGTCTTGAGAAGTTGAATATCACATTTGATTTAGCAAGTGATGATTG 1397
Query 1456 GCTTCA-CAACTTCTCAAAGGAGCATCTATCTCGCACATTCCACTTACTGGGCACCCAGC 1514
|||||| ||| |||| ||||| |||||||| || | |||||||||||||||||||||||
Sbjct 1398 GCTTCATGAAC-TCTCGAAGGATCATCTATCCCGTATATTCCACTTACTGGGCACCCAGC 1456
Query 1515 TCCATTATCTATGGAATACCTTTCTGACATTGCACCGGGATAATTACACAAAAAT-CTTG 1573
| ||| |||| ||||| || |||||| ||| |||||||||||| |||||||||| | ||
Sbjct 1457 TGCATCATCTTTGGAACACATTTCTGGGATTTCACCGGGATAATCACACAAAAATAC-TG 1515
Query 1574 GAATATCTTCGCGATATCTGGACTAAAGATCGAAGAGCGGAATGGTCAATATGGATGGTG 1633
||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1516 GAATATCTTTGTGATATCTGGACTAAAGATCGAAGAGCTGAATGGTCAATATGGATGGTG 1575
Query 1634 TACTCCAAGGTTGAAATGCCACATCATTTTAT--A-AGTGGAATGGA-GGACAT-TTCAA 1688
||||| |||||||||||||| ||||||||||| | |||||||| || || || || ||
Sbjct 1576 TACTCTAAGGTTGAAATGCCCCATCATTTTATAAATAGTGGAAT-GACAGATATCTT-AA 1633
Query 1689 ACCATAGTTCACACAAAAGAGTCTCGACTGGGTTGAAGCTGAATGATCCTGCACAAGTTG 1748
|||| ||| |||||||||| | ||| | || | | ||||||| || || ||| |||
Sbjct 1634 ACCAGAGTGCACACAAAAGGGCCTC-A---GG-CGTA-TTGAATGAACCGGCCCAAATTG 1687
Query 1749 CATCCACCCGCGCTGAACTTCACCGTCGAAGTATTGCACAAATGCGGATAAACAACCGGG 1808
|| | ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1688 CAGCTACCCGTGCTGAACTTCACCGTCGAAGTATTGCACAGATGCGGATTAACAACCGTT 1747
Query 1809 CAATACAAGACATGCATATATTTGGTGATCCTATGCGGGTTCCTATAGTTATAATTGAAC 1868
|||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 1748 CAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATAATTGAAC 1807
Query 1869 GTGT-TTGGAATGCACCAAGGCGTACGTTCAGTGATAATTCGTA-CATGAGACATGTTGA 1926
|||| ||| ||||||||||| || || || |||||||||||||| | |||||||| | ||
Sbjct 1808 GTGTCTTG-AATGCACCAAGACGCACTTTAAGTGATAATTCGTATC-TGAGACATATGGA 1865
Query 1927 TA-GAATCGATTCTAGCTTACTTAATGGGCATGATGATGAGAGTGGGACGAA-AAAA-CA 1983
| | | ||||||||||||||||||||||| | ||||| || | | || |||| |
Sbjct 1866 TCTGCTT-GATTCTAGCTTACTTAATGGGCACAAGGATGA-AGCAGAAAAAACAAAAGC- 1922
Query 1984 TATTAAC-CCACAGCATACTGGGCGTGAGCTGAAGATTGTTGTTTTTGTTCATGGTTTCC 2042
|| |||| || || || | || ||||| || || || | | ||
Sbjct 1923 TACTAACTCC-CACCAAAGTGCCCGTGAACTAAAAAT-------------C--G-TT--- 1962
Query 2043 AGGGGCATCACTTAGACCTAAGGCTTATCCGGAATCAGTGGCTCCTAATTGATCCAAAGA 2102
||| |||||||| ||| || ||||| |||||||||||||||| | || ||||||||||
Sbjct 1963 -GGG-CATCACTTGGACTTACGGCTTTTCCGGAATCAGTGGCTTTTGATAGATCCAAAGA 2020
Query 2103 TAGAGTTTCTCATGTCTGAGGCAAATGAGGAGAGAACACATGGCGATTTTAGGGAAATGG 2162
|||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 2021 TAGAGTTTCTCATGTCAGAGGCAAATGAGGAGAAAACACATGGCGATTTCAGGGAAATGG 2080
Query 2163 GTCAGAGGCTTGCGCAGGAAGTTGTTTCTTTT-TTCAAGAGGAAAAAGGATAAACATGCG 2221
| || ||||| |||||||||||||||||||| || |||||||||||||||| | |||||
Sbjct 2081 GACAAAGGCTCGCGCAGGAAGTTGTTTCTTTCCTT-AAGAGGAAAAAGGATAGATATGCG 2139
Query 2222 AGATACGGG-CGCTTGAAAAACATCAAGCTGAGTTTTGTTGGACATTCAATTGGTAACGT 2280
||| | ||| | ||||||| |||||| |||||||||| || ||||| || || || ||
Sbjct 2140 AGACA-GGGACAATTGAAAAGCATCAAATTGAGTTTTGTCGGGCATTCCATCGGCAATGT 2198
Query 2281 CATCATCAGAGCTGCAATAGCTGATAGTTTGATGGATCCATACAGGAAGTATTTT-CATA 2339
||| |||||| | ||||| || |||||||| ||||| ||||||||||||| || | || |
Sbjct 2199 CATTATCAGAACAGCAATTGCCGATAGTTTAATGGAACCATACAGGAAGT-TTCTACACA 2257
Query 2340 CATATATATCGCTTTCGGGTCCACACTTGGGTTATCTATACAGTTCAAATTCCTTGTTTA 2399
||||| |||||||||| ||||| |||||||| |||||||||||| |||| ||||| ||||
Sbjct 2258 CATATCTATCGCTTTCAGGTCCGCACTTGGGGTATCTATACAGTACAAACTCCTTATTTA 2317
Query 2400 ATTCTGGACTTTGGCTCCTGAAGAAGTTAAAGAGTACTCAGGTTATTCATCAGCTTACAC 2459
|||| || ||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 2318 ATTCCGGGCTTTGGCTCCTGAAGAAGTTAAAGAGTACACAAGTTATCCATCAGCTTACAC 2377
Query 2460 TCACAGATGATCCTGATCTCCAGAATACTTTCTTTTACAAGCTCTGCAAGCAAAAGACGT 2519
||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| |
Sbjct 2378 TCACAGATGATCCTGATCTCCGGCATACTTTCTTTTACAAACTCTGCAAGCAAAAGACAT 2437
Query 2520 TGTGCAGT-TTCAAGAATATAATTCTCCTGTCTTCGCCTCAGGATGGGTATGTTCCATAT 2578
|| | | ||||| |||||||||||||| || ||||||||||| || ||||||||||||
Sbjct 2438 TG-GAAAACTTCAAAAATATAATTCTCCTCTCATCGCCTCAGGACGGTTATGTTCCATAT 2496
Query 2579 CACTCAGCTAGGATTGAGTCATGCCAACCAGCTTCTTTCGACAACTC-AAAAAGAGGTGT 2637
|||||||| || ||||| ||||||||||||||||||||||||| ||| |||||| || ||
Sbjct 2497 CACTCAGCAAGAATTGAATCATGCCAACCAGCTTCTTTCGACAGCTCGAAAAAG-GGAGT 2555
Query 2638 TGCTTTCTTGGAGATGCTTAATAACTGTATGGACCAAATACGTGGGCCA-TCCCCTGAAA 2696
|| |||||||| ||||| ||||| ||| |||||||||||||||| || | ||| |||
Sbjct 2556 AGCCTTCTTGGAAATGCTGAATAATTGTTTGGACCAAATACGTGGACCGGTACCC-GAAG 2614
Query 2697 CTCCGCACCACCAGA-GAGTGTTCATGCGCTGTGATGTCAACTTCGACACAACCTTGTAT 2755
| || || || || | | |||||||||||||| || ||||||||||||| ||| |||||
Sbjct 2615 CACCACATCAGCA-ACGGGTGTTCATGCGCTGCGACGTCAACTTCGACATGACCGTGTAT 2673
Query 2756 GGTCGTAACCTGAACTCATTCATCGGCCGTGCTGCTCACATCGAGTTTTTGGAGTCTGAT 2815
|| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 2674 GGCCGTAACCTGAACTCATTCATCGGACGTGCTGCTCACATCGAGTTTTTAGAGTCGGAT 2733
Query 2816 GTCTTTGCAAGATTCATAATGTGGTCATTCCAAGATCTATTCCGCTGA 2863
||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2734 ATCTTTGCTAGATTCATAATGTGGTCATTCCAAGATCTTTTCCGCTGA 2781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119336737585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5