BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10010.1
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919771 jgi|Araly1|919771|scaffold_101052.1 1391 0.0
Ahg471112 jgi|Araly1|471112|fgenesh2_kg.1__1066__AT1G10010.1 1260 0.0
> Ahg919771 jgi|Araly1|919771|scaffold_101052.1
Length=1517
Score = 1391 bits (753), Expect = 0.0
Identities = 1180/1383 (85%), Gaps = 42/1383 (3%)
Strand=Plus/Plus
Query 59 TCGACGACGATGGTCGAGAGAAGAGAACGGGAACATTT-TGGACGGCGAGTGCGCACATA 117
|||||||||||||||| |||||||| ||||| || ||| | ||||||||| || ||||||
Sbjct 134 TCGACGACGATGGTCGGGAGAAGAGGACGGGGACGTTTAT-GACGGCGAGCGCCCACATA 192
Query 118 ATCACGGCGGTCATAGGCTCAGGGGTGCTGTCGTTGGCTTGGGCTATAGCACAGCTTGGT 177
||||||||||| |||||||| || ||| |||| ||| ||||||| |||||||||||||||
Sbjct 193 ATCACGGCGGTTATAGGCTCCGGTGTGTTGTCCTTGTCTTGGGCAATAGCACAGCTTGGT 252
Query 178 TGGGTGGCAGGAACCACAGTTTTGGTCGCTTTCGCCATCATTACTTACTACACGTCCACC 237
||||||||||||||| | |||||||| |||| |||| ||||| ||||||||| ||||||
Sbjct 253 TGGGTGGCAGGAACCGTAATTTTGGTCACTTTTGCCAGCATTAATTACTACACATCCACC 312
Query 238 TTGCTCGCCGACTGTTACCGTTCGCCGGACTCCATCACC-GGAACACGCAACTATA-ATT 295
||||||||||||||||||| || || ||| || |||| |||||||| || |||| | |
Sbjct 313 ATGCTCGCCGACTGTTACCGATCTCCCGACACC-GCACCGGGAACACGGAATTATACA-T 370
Query 296 ACATGGGCGTCGTCCGATCTTACCTTGGTGGTA-AAAAGGTTCAGCTATGTGGAGTGGCA 354
|||||| |||||||||| ||||||||||||||| ||| || ||| |||||||| |||||
Sbjct 371 ACATGGACGTCGTCCGAGCTTACCTTGGTGGTAGGAAA-GTGCAGTTATGTGGACTGGCA 429
Query 355 CAGTACGTGAA-TCTCGTAGGGGTCACTATTGGTTACACCATCACTGCCTCCATAAGCTT 413
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CAGTACG-GAAGTCTCGTAGGGGTCACTATTGGTTACACCATCACTGCCTCCATAAGCTT 488
Query 414 AGTAGCGATTGGGAAATCAAATTGTTATCATGACAAGGGACATAAAGCGAAATGTTC-TG 472
||||||||| || ||| ||||||||| |||||||||||||||| | ||||||||||| |
Sbjct 489 AGTAGCGATCGGAAAAGCAAATTGTTTTCATGACAAGGGACATGATGCGAAATGTTCCT- 547
Query 473 TATCGAATTATCCATACATGGCGGCATTTGGGATCGTCCAGA-TCATTCTGAGCCAGCTT 531
| ||||||||||||| |||||| ||||||||||||||||| | | || || |||||| |
Sbjct 548 TGTCGAATTATCCATCCATGGCAGCATTTGGGATCGTCCA-ACTTATGCTCAGCCAGATC 606
Query 532 CCTAACTTCCACAAGCTCTCTTTCCTATCCATCATCGCCGCGGTTATGTCCTTCTCTTAT 591
||||| || ||||| ||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct 607 CCTAATTTTCACAAACTCTCTTTCCTCTCCATCATCGCCACGGTTATGTCCTTCTGTTAT 666
Query 592 GCGTCTATCGGAATAGGCCTAGCCATCGCTACTGT-AGCAAGTGGGAAGATTGGTAAGAC 650
|||||||||||||| ||| || ||||| | ||||| | ||||||||||| ||||||||||
Sbjct 667 GCGTCTATCGGAATCGGCTTATCCATCACCACTGTGA-CAAGTGGGAAGGTTGGTAAGAC 725
Query 651 AGAATTGACAGGG-ACAGTGATAGGTGTGGACGTAACTGCGTCTGAAAAAGTTTGGAAAT 709
| |||| ||| || ||| | || |||||||||||||||||||||||| | |||| ||
Sbjct 726 GGGGCTGAC-GGGTACGGTGGTTGGGGTGGACGTAACTGCGTCTGAAAAACTGTGGAGAT 784
Query 710 TGTTTCAAGC-GATTGGAGACATTGCCTTTTCATACGCTT-TTACCACTATTCTCATCGA 767
||||||||| | ||||||||||||| || ||||| |||| || ||| | ||||| | ||
Sbjct 785 CGTTTCAAGCCG-TTGGAGACATTGCATTCTCATATGCTTATT-CCATTGTTCTCGTTGA 842
Query 768 GATTCAGGACACATTGAGATCAAGCCCACCAGAGAACAAAGTGATGAAACGAGCAAGTCT 827
||| ||||| ||||||| ||||| |||||| |||||||||||||||||| |||||| ||
Sbjct 843 GATCCAGGATACATTGAAATCAACCCCACCGGAGAACAAAGTGATGAAAAAAGCAAGCCT 902
Query 828 TG-TCGGAGTCTCAACCACAACTGTTTTCTACATCTTGTGTGGTTGCATCGGATATGCTG 886
|| | |||||||| || |||||||||||||||||||| |||||| |||||||||||||||
Sbjct 903 TGCT-GGAGTCTCCACGACAACTGTTTTCTACATCTTATGTGGTGGCATCGGATATGCTG 961
Query 887 CGTTCGGCAACCAAGCCCCTGGTGACTTCCTTACCGATTTTGGTTTTTACGAACCTTATT 946
| ||||| ||| |||||||||||||| ||||||| || |||||||||||||||||||| |
Sbjct 962 CATTCGGAAACAAAGCCCCTGGTGACCTCCTTACAGACTTTGGTTTTTACGAACCTTACT 1021
Query 947 GGCTCATCGACTTTGCCAATGCTTGCATTGCTCTCCATCTAATAGGTGCCTATCAGGTGT 1006
|||||||||| ||||||||||| ||||| | |||||| ||||| | || ||||||||||
Sbjct 1022 GGCTCATCGATTTTGCCAATGCGTGCATCGTTCTCCACCTAATTGCAGCTTATCAGGTGT 1081
Query 1007 ATGCGCAGCCGTTTTTCCAGTTTGTTGAGGA-AAACTGCAACAAAAAATGGCCTCAAAGC 1065
|||||| || ||||||||||||||||| | ||| ||||||||||| ||||| |||||
Sbjct 1082 TTGCGCAACCAATTTTCCAGTTTGTTGAGAAGAAA-TGCAACAAAAAGTGGCCAGAAAGC 1140
Query 1066 AATTTCATCAACAAAGAATACTCG-TCAA-AGGTTCCTTTGCTTGGAAAATGT-CGTGTC 1122
| |||||||| || ||| | ||| | || | | || ||| ||||||||||| | ||
Sbjct 1141 ATTTTCATCACCAGTGAACATTCGATGAATA--TACCATTGATTGGAAAATGTACCA-TC 1197
Query 1123 AACCTCTTCAGACTGGTT-TGGAGGACATGCTATGTTGTTTTGACAACATTTGTAGCAAT 1181
||||| |||||||| || ||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 1198 AACCTTTTCAGACTA-TTGTGGAGGACATGCTATGTGGTTTTGACTACAGTTGTAGCAAT 1256
Query 1182 GATATTCCCCTTCTTCAATGCGATCTTGGGTTTGCTAGGGGCATTCGCGTTCTGGCCACT 1241
||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||
Sbjct 1257 GATATTCCCCTTCTTCAATGCAATCTTGGGTTTGCTCGGGGCACTCGCGTTCTGGCCACT 1316
Query 1242 CACAGTTTATTTTCCGGTGGCAATGCACATTGCGCAGGCTAAAG-TCAAGAAGTATTCTC 1300
|||||||||||||||||||||||||||||||| |||||| |||| | |||||||||||||
Sbjct 1317 CACAGTTTATTTTCCGGTGGCAATGCACATTGAGCAGGC-AAAGGTTAAGAAGTATTCTC 1375
Query 1301 GTAGATGGTT-GGCCTTGAACCTCCTCGTATTGGTTTGCTTGATCGTCTCGGC-CCTTGC 1358
| ||||| | || ||||| ||||| |||| | |||| ||||| || || | ||| ||
Sbjct 1376 TTCGATGGATAGGG-TTGAAACTCCTTGTATCGCTTTGTTTGATTGTTTCA-CTCCTAGC 1433
Query 1359 CGCCGTAGGATCCATCATTGGCTTAATTAA-TAGTGTCAAGTCATACAAGCCCTTCAAGA 1417
| | |||||||||| | ||||| || || |||||||||| |||||||||| ||||| |
Sbjct 1434 CACAATAGGATCCATTGTCGGCTTGAT-AACTAGTGTCAAGGCATACAAGCCTTTCAACA 1492
Query 1418 ATT 1420
|||
Sbjct 1493 ATT 1495
> Ahg471112 jgi|Araly1|471112|fgenesh2_kg.1__1066__AT1G10010.1
Length=1464
Score = 1260 bits (682), Expect = 0.0
Identities = 745/776 (96%), Gaps = 2/776 (0%)
Strand=Plus/Plus
Query 1 ATGGACGCATACAACAATCCCTCGGCGGTGGAGTCGGGTGACGCCGCCGTGAAAAGCGTC 60
||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 1 ATGGAAGCATACCACAATCCTTCGGCGGTGGAGTCGGGTGACACCGCCGTGAAAGGCGTC 60
Query 61 GACGACGATGGTCGAGAGAAGAGAACGGGAACATTT-TGGACGGCGAGTGCGCACATAAT 119
||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct 61 GACGACGATGGTCGAGAGAAGAGAACGGGGACGTTTAT-GACGGCGAGTGCGCACATAAT 119
Query 120 CACGGCGGTCATAGGCTCAGGGGTGCTGTCGTTGGCTTGGGCTATAGCACAGCTTGGTTG 179
||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 CACGGCGGTGATAGGCTCCGGGGTGCTGTCGTTGGCTTGGGCTTTAGCACAGCTTGGTTG 179
Query 180 GGTGGCAGGAACCACAGTTTTGGTCGCTTTCGCCATCATTACTTACTACACGTCCACCTT 239
|||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| |
Sbjct 180 GGTGGCAGGAACCATAATTTTGGTCGCTTTCGCCATCATTACTTACTACACCTCCACCAT 239
Query 240 GCTCGCCGACTGTTACCGTTCGCCGGACTCCATCACCGGAACACGCAACTATAATTACAT 299
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 240 GCTCGCCGACTGTTACCGTTCGCCGGACCCCATCAACGGAACACGCAACTATAATTACAT 299
Query 300 GGGCGTCGTCCGATCTTACCTTGGTGGTAAAAAGGTTCAGCTATGTGGAGTGGCACAGTA 359
||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 300 GGGCGTCGTCCGAACTTACCTTGGGGGTAAAAAGGTTCAGCTATGTGGACTGGCACAGTA 359
Query 360 CGTGAATCTCGTAGGGGTCACTATTGGTTACACCATCACTGCCTCCATAAGCTTAGTAGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGTGAATCTCGTAGGGGTCACTATTGGTTACACCATCACTGCCTCCATAAGCTTAGTAGC 419
Query 420 GATTGGGAAATCAAATTGTTATCATGACAAGGGACATAAAGCGAAATGTTCTGTATCGAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATTGGGAAATCAAATTGTTATCATGACAAGGGACATAAAGCGAAATGTTCTGTATCGAA 479
Query 480 TTATCCATACATGGCGGCATTTGGGATCGTCCAGATCATTCTGAGCCAGCTTCCTAACTT 539
|||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||
Sbjct 480 TTATCCGTACATGGCGGCATTTGGGATCATCCAGATTATTCTGAGCCAGCTTCCTAATTT 539
Query 540 CCACAAGCTCTCTTTCCTATCCATCATCGCCGCGGTTATGTCCTTCTCTTATGCGTCTAT 599
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCACAAGCTCTCTTTCCTCTCCATCATCGCCGCGGTTATGTCCTTCTCTTATGCGTCTAT 599
Query 600 CGGAATAGGCCTAGCCATCGCTACTGTAGCAAGTGGGAAGATTGGTAAGACAGAATTGAC 659
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGGAATAGGCCTAGCCATCGCCACTGTAGCAAGTGGGAAGATTGGTAAGACAGAATTGAC 659
Query 660 AGGGACAGTGATAGGTGTGGACGTAACTGCGTCTGAAAAAGTTTGGAAATTGTTTCAAGC 719
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGCACAGTGATAGGTGTGGACGTAACTGCGTCTGAAAAAGTTTGGAAATTGTTTCAAGC 719
Query 720 GATTGGAGACATTGCCTTTTCATACGCTTTTACCACTATTCTCATCGAGATTCAGG 775
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 720 GATTGGAGACATTGCCTTTTCATATGCTTTTACCACTATTCTCATCGAGATTCAGG 775
Score = 1074 bits (581), Expect = 0.0
Identities = 632/657 (96%), Gaps = 2/657 (0%)
Strand=Plus/Plus
Query 773 AGGACACATTGAGATCAAGCCCACCAGAGAACAAAGTGATGAAACGAGCAAGTCTTGTCG 832
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 809 AGGACACATTGAGATCAAGCCCACCAGAGAACAAAGTGATGAAACGAGCGAGTCTTGCCG 868
Query 833 GAGTCTCAACCACAACTGTTTTCTACATCTTGTGTGGTTGCATCGGATATGCTGCGTTCG 892
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 869 GGGTCTCAACCACAACTGTTTTCTACATCTTGTGTGGTTGCATCGGATATGCTGCATTCG 928
Query 893 GCAACCAAGCCCCTGGTGACTTCCTTACCGATTTTGGTTTTTACGAACCTTATTGGCTCA 952
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 929 GGAACCAAGCCCCTGGTGACTTCCTTACTGATTTTGGTTTTTACGAACCTTATTGGCTCG 988
Query 953 TCGACTTTGCCAATGCTTGCATTGCTCTCCATCTAATAGGTGCCTATCAGGTGTATGCGC 1012
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 989 TCGACTTTGCCAATGCTTGCATTGCTCTCCATCTTATCGGTGCCTATCAGGTGTACGCGC 1048
Query 1013 AGCCGTTTTTCCAGTTTGTTGAGGAAAACTGCAACAAAAAATGGCCTCAAAGCAATTTCA 1072
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1049 AGCCGTTTTTCCAGTTTGTTGAGGAGAACTGCAACAAAAAATGGCCTCAAAGCAATTTCA 1108
Query 1073 TCAACAAAGAATACTCGTCAAAGGTTCCTTTGCTTGGAAAATGTCGTGTCAACCTCTTCA 1132
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1109 TCAACAAAGAATACTCGTCAAACATACCTTTGCTTGGAAAATGTCGTGTCAACCTCTTCA 1168
Query 1133 GACTGGTTTGGAGGACATGCTATGTTGTTTTGACAACATTTGTAGCAATGATATTCCCCT 1192
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1169 GACTGGTTTGGAGAACATGCTATGTGGTTTTGACAACATTTGTAGCAATGATATTCCCCT 1228
Query 1193 TCTTCAATGCGATCTTGGGTTTGCTAGGGGCATTCGCGTTCTGGCCACTCACAGTTTATT 1252
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1229 TCTTCAATGCGATCTTGGGTTTGCTTGGGGCACTCGCGTTCTGGCCACTCACAGTTTATT 1288
Query 1253 TTCCGGTGGCAATGCACATTGCGCAGGCTAAA-GTCAAGAAGTATTCTCGTAGATGGTTG 1311
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1289 TTCCGGTGGCAATGCACATTGCGCAGGC-AAAGGTCAAGAAGTATTCTCGTAGATGGTTG 1347
Query 1312 GCCTTGAACCTCCTCGTATTGGTTTGCTTGATCGTCTCGGCCCTTGCCGCCGTAGGATCC 1371
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1348 GCCTTGAACCTCCTCGTATTGGTTTGCTTGATCGTCTCAATCCTTGCCGCGGTAGGATCC 1407
Query 1372 ATCATTGGCTTAATTAATAGTGTCAAGTCATACAAGCCCTTCAAGAATTTAGACTAG 1428
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 ATCATTGGCTTAATAAATAGTGTCAAGTCATACAAGCCCTTCAAGAATTTAGACTAG 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53402523490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5