BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10020.1
Length=1976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919773 jgi|Araly1|919773|scaffold_101054.1 2372 0.0
> Ahg919773 jgi|Araly1|919773|scaffold_101054.1
Length=1426
Score = 2372 bits (1284), Expect = 0.0
Identities = 1373/1417 (97%), Gaps = 2/1417 (0%)
Strand=Plus/Plus
Query 244 GTTGCGATTGAAATGGATCCTTGTCCATTCATCCGTCTTACAATCGGGAACCTAGCTTTG 303
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 9 GTTGCGATTGAAATGGATCCTTGTCCATTCATCCGTCTTACGATCGGGAATCTAGCTTTG 68
Query 304 AAAGTTCCGTTAGCGGCGAAGACAACGAGCTCCGTCGTGCATCCGTCGTCTTCTCCTTGT 363
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 69 AAAGTTCCTTTAGCGGCGAAGACTACGAGCTCCGTCGTGCATCCGTCGTCTTCTCCTTGT 128
Query 364 TTTTGTAAAATCAAACTCAAAAACTTCCCGCCGCAAACCGCCGCAATCCCGTACATTCCT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TTTTGTAAAATCAAACTCAAAAACTTCCCGCCGCAAACCGCCGCAATCCCGTACATTCCT 188
Query 424 TTGGAGACGACTCAGTTTCCGGAGATCCAAACCCTAGCCGCCACGTTTCATCTCAGCAGC 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 CTGGAGACGACTCAGTTTCCGGAGATCCAAACCCTAGCCGCCACGTTTCATCTCAGCAGC 248
Query 484 TCCGATATTCAACGCTTAGCTTCCAGATCTATATTTACTTCTAAGCCTTGTCTTAAAATT 543
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 249 TCCGATATTCAACGCTTAGCTTCCAGATCTATTTTTACTTCTAAGCCATGTCTTAAGATT 308
Query 544 TTGATCTACACTGGAAGAGCCGGCGCTGCTTGCGGCGTACACTCCGGTCGTCTTCTGGCG 603
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TTGATCTACACCGGAAGAGCCGGCGCTGCTTGCGGCGTACACTCCGGTCGTCTTCTGGCG 368
Query 604 AAAGTCTCCGTACCGTTGGATCTATCTGGTACGCAATCGAAACCGTGCGTCTTCCACAAC 663
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 369 AAAGTCTCCGTACCGTTGGATCTATCTGGTACGCTATCTAAACCGTGCGTCTTCCACAAC 428
Query 664 GGATGGATATCAGTCGGAAAAGGAGCTGGAAAATCGTCGTCGTCTGCTCAGTTTCACCTG 723
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 429 GGATGGATATCAGTCGGAAAAGGAGCTGGGAAATCGTCGTCGTCGGCTCAGTTTCACCTG 488
Query 724 AATGTGAAGGCGGAGCCTGATCCTAGATTCGTTTTTCAGTTTGACGGCGAGCCTGAATGT 783
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 489 AATGTGAAGGCGGAGCCTGATCCTAGATTCGTTTTTCAGTTCGACGGCGAGCCTGAATGT 548
Query 784 AGTCCTCAAGTCGTTCAGATTCAAGGCAATATCCGGCAACCAGTTTTCACATGCAAATTC 843
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 549 AGTCCTCAAGTCGTTCAGATTCAAGGAAATATCCGGCAACCAGTTTTCACATGCAAATTC 608
Query 844 AGTTGCCGGCACACCGGTGATCGTACTCAGAGATCAAGATCATTGCCGACTGAGACAAGT 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AGTTGCCGGCACACCGGTGATCGTACTCAGAGATCAAGATCATTGCCGACTGAGACAAGT 668
Query 904 GTTTCACGGAGCTGGCTAAACTCGTTCGGGAGTGAGAGAGAACGTCCTGGGAAAGAGCGT 963
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 GTGCCACGGAGCTGGCTAAACTCGTTCGGGAGTGAGAGAGAACGTCCTGGGAAAGAGCGA 728
Query 964 AAAGGATGGTCCATAACAGTCCATGACTTGTCCGGTTCACCAGTGGCCATGGCGTCAATC 1023
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 729 AAAGGATGGTCCATAACAGTTCATGACTTGTCCGGTTCTCCAGTGGCCATGGCTTCAATC 788
Query 1024 GTCACTCCATTCGTGGCATCTCCTGGAACCGATCGTGTGAGCCGGTCAAACCCTGGGTCA 1083
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 GTCACTCCGTTCGTTGCATCTCCTGGAACCGATCGTGTGAGCCGGTCAAACCCTGGGTCA 848
Query 1084 TGGCTTATACTGCGTCCCGGAGACTGTACCTGGAGACCGTGGGGAAGACTTGAAGCATGG 1143
||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||
Sbjct 849 TGGCTTATACTGCGTCCCGGAGATTGTACCTGGAGACCGTGGGGGAGACTCGAGGCATGG 908
Query 1144 CGGGAACGCGGTGGAGCCACTGATGGTCTAGGTTACAGATTCGAACTCATCCCAGACGGA 1203
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 909 CGGGAACGCGGTGGAGCCACTGATGGTCTCGGTTACAGATTCGAACTCATCCCAGATGGA 968
Query 1204 TCAAGCGGTGCAGGAATCGTGCTTGCGGAATCAACCATAAGTTCTCACAGAGGTGGGAAA 1263
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 969 TCTAGCGGTGCAGGAATCGTGCTTGCGGAGTCAACCATAAGTTCTCACAGAGGTGGGAAA 1028
Query 1264 TTCTCAATCGAGTTGGGATCGTCGCCTTCTTCATCGTCGCCAACAAGTGTG-GTGAACCG 1322
||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 1029 TTCTCAATCGAATTGGGATCGTCGTCTTCTTCATCGTCGCCAACAAGTG-GCGTGAACCG 1087
Query 1323 ATCGAGAAGCCGTAGAGGTGGGAGTAGTGGAAGCGGTGGAGGAGCATCGCCGGCGAATAG 1382
||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1088 ATCAAGAAGCCGCAGAGGTGGGAGCAATGGAAGCGGTGGAGGAGCATCGCCGGCGAATAG 1147
Query 1383 TCCGAGAGGAGGGAGCGGAGATTACGGTTACGGATTGTGGCCGTGGAACGTGTACAAAGG 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 TCCGAGAGGAGGGAGCGGAGATTACGGTTACGGATTGTGGCCGTGGAACGTGTACAAAGG 1207
Query 1443 GTTTGTGATGTCAGCAAGTGTGGAAGGTGAAGGGAAATGTAGTAAGCCTTGTGTAGAGGT 1502
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1208 GTTTGTGATGTCAGCAAGTGTGGAAGGTGAAGGGAAATGTAGTAAACCTTGTGTAGAGGT 1267
Query 1503 GAGTGTGCAGCACGTTAGCTGTATGGAAGATGCGGCTGCTTACGTGGCGCTTTCTGCAGC 1562
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1268 GAGTGTGCAGCACGTTAGCTGTATGGAAGATGCGGCTGCTTACGTAGCGCTTTCTGCAGC 1327
Query 1563 CATTGATCTTAGTATGGATGCTTGCAGGCTGTTTAATCAACGGATGAGGAAAGAGCTTTG 1622
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1328 CATTGATCTTAGTATGGATGCTTGCAGGTTGTTTAATCAACGGATGAGGAAAGAGCTTTG 1387
Query 1623 CCATGAGTCACTGAGCTGAAGAAAAGACAAGGATTTT 1659
||||||||||||||||||||||||||| ||| |||||
Sbjct 1388 CCATGAGTCACTGAGCTGAAGAAAAGATAAGAATTTT 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74275977750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5