BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G10030.1

Length=743
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471114 jgi|Araly1|471114|fgenesh2_kg.1__1068__AT1G10030.1         769    0.0  


> Ahg471114 jgi|Araly1|471114|fgenesh2_kg.1__1068__AT1G10030.1
Length=629

 Score =  769 bits (416),  Expect = 0.0
 Identities = 501/538 (93%), Gaps = 21/538 (4%)
 Strand=Plus/Plus

Query  146  AGATGAAGGCGTTGGGGTATTGGTTAATGGTGGTTGGTTCACTGAGACTAGCTTCTGTTT  205
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  90   AGATGAAGGCGTTAGGGTATTGGTTAATGGTGGTTGGTTCACTGAGACTAGCTTCTGTTT  149

Query  206  GGTTTGGTTTCTTCAACATTTGGGCTCTTCGTCTCGCTGTCTTCTCTCAGACCACCATGA  265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  150  GGTTTGGTTTCTTCAACATTTGGGCTCTTCGTCTCGCTGTCTTCTCTCAGACCACCATGA  209

Query  266  GTGAAGTTCATGGACGTACATTCGGAGTATGGACACTCTTGACCTGCACTCTCTGCTTTC  325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  210  GTGAAGTTCATGGACGTACATTCGGAGTATGGACACTCTTGACCTGCACTCTCTGCTTTC  269

Query  326  TTTGTGCATTCAACCTCGAAAACAAACCATTATACTTGGCTACGTTTCTATCATTTATCT  385
            |||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct  270  TTTGTGCATTCAACCTCGAAAACAAACCATTATATTTGGCTACCTTCCTATCATTTATCT  329

Query  386  ATGCGTTAGGCCATTTTCTGACTGAATACCTCTTTTACCAAACAATGACCATCGCGAATC  445
            |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  330  ATGCCTTAGGCCATTTTCTGACCGAATACCTCTTTTACCAAACAATGACTATCGCGAATC  389

Query  446  TCTCAACTGTGGGCTTCTTTGCAGGTACATCGATTGTGTGGATGCTCTTGGAGTGGAATT  505
            ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct  390  TCTCAACTGTGGGCTTCTTTGCAGGCACATCGATTGTCTGGATGCTCTTGGAGTGGAATT  449

Query  506  CCCTTGAACAACCACACTCCAAACTTTCTTGATGTTAGTCCACATCTATGTTTCTAAGTC  565
            ||||||||||||||||||||||| ||| |||||||||||||        |     |  ||
Sbjct  450  CCCTTGAACAACCACACTCCAAATTTTATTGATGTTAGTCCG-------G-----A--TC  495

Query  566  TCTCGTCTTATAAGCTTTTCTAAAAGTGGGAATCATCTGAGTTTTT-GCTCGATCCCTAA  624
             ||  | ||| | |||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct  496  -CT--T-TTA-A-GCTTTTCTAAAAGTTGGAATCATCTGAGTTTTTTGCTCGATCCCTAA  549

Query  625  AGCTGTTGATTCATTGTTTCATCTAAATCTTACGACATCTTTGATGGAGTCTTGAACT  682
            ||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||
Sbjct  550  AGCTGTTGATTCATTGTATCATCTAAATCTTTTGACATCTTTGATGGAGTCTTGAACT  607



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27372254406


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5