BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10040.1
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471117 jgi|Araly1|471117|fgenesh2_kg.1__1071__AT1G10040.2 2211 0.0
> Ahg471117 jgi|Araly1|471117|fgenesh2_kg.1__1071__AT1G10040.2
Length=1646
Score = 2211 bits (1197), Expect = 0.0
Identities = 1540/1692 (91%), Gaps = 78/1692 (5%)
Strand=Plus/Plus
Query 1 ATCTCAGATGTGTAAGAAAGAAAATGTCAATGGCGTTTCAACGACGACAACAAATACTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1 ATCTCAGATGTGTAAGAAAGAAAATGTCAATGGCGTTTCAACGACGACAAC-AATACTGC 59
Query 61 TGTGGGGACTTTCCCTAACGACTGAAACTATTCTCTGTTTCTCTCTGACCATTTGAACTT 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGTGGGGACCTTCCCTAACGACTGAAACTATTCTCTGTTTCTCTCTGACCATTTGAACTT 119
Query 121 TTGATGTTTGAAGTCTATAAAAACCTACGCGAGACCTTCGAATCTTCCCAAAGTGGCGAC 180
||||||||| ||||| | || | | | |||||||||||||||||
Sbjct 120 TTGATGTTTCAAGTC--T---AA--T---------C-T----TCTTCCCAAAGTGGCGA- 157
Query 181 CT-TGAATT-AACACCTGCATAAAGTTTCCATTTTTCATTCTTCGTTTCGTGATCATGGA 238
|| |||||| ||| ||||| |||||||||| | || |||||||||||||||||||
Sbjct 158 CTATGAATTAAAC-CCTGCTTAAAGTTTCC------C-TTTTTCGTTTCGTGATCATGGA 209
Query 239 GGAAGAAGATAGCGTGATTCCTAAG-AATACAGAAGGAGATGGGCGTGTTGGAAGTGATC 297
|||||||||||||||||| | ||| || ||||||| ||||| |||||||||||||||||
Sbjct 210 GGAAGAAGATAGCGTGATAAC-AAGAAACACAGAAGAAGATGTGCGTGTTGGAAGTGATC 268
Query 298 TTGAAGGAATCCG-TAAG-C--CAaagaagat---g--aa-g-a-a-gatgagaagcagg 344
|||||||||| || | | | ||||||||| | || | | | |||||||||| ||
Sbjct 269 TTGAAGGAAT-CGATGGGTCAAAAAAGAAGATGAAGATAATGAAGACGATGAGAAGCGGG 327
Query 345 aagagtgatgataaagagacgaagaagaagaagaaaaagTATTGGATGGGTTGTCTCAGA 404
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 328 AAGAGTGATGATAAAGAGACGAAGAAGAAGAAG---AAGTATTGGATGGGTTGTCTCAGA 384
Query 405 GCTGAATCAGACGAAAGTGGAAACGTCGATTTGACTGTTGATTTCCCTGGCGAACGCACT 464
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 GCTGAATCTGACGAGAGTGGAAACGTCGATTTGACTGTTGATTTCCCTGGCGAACGCACT 444
Query 465 GAGCCGACTCACCTAGTCGTCATGGTCAACGGTCTCATCGGCAGTGCTCAGAATTGGAGA 524
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GAGCCAACTCACCTAGTCGTCATGGTCAACGGTCTCATCGGCAGTGCTCAGAATTGGAGA 504
Query 525 TTCGCCGCTAAGCAGATGCTTAAGAAGTATCCTCAGGATCTCCTCGTTCACTGCAGTAAA 584
||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 505 TTCGCTGCTAAGCAGATGCTAAAGAAGTATCCTCAGGATCTCGTAGTTCACTGCAGTAAA 564
Query 585 CGCAACCATTCCACACAGACATTTGATGGTGTTGATGTTATGGGAGAAAGATTAGCTGAA 644
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 CGCAACCATTCAACACAGACATTTGATGGTGTTGATGTTATGGGAGAAAGATTAGCTGAA 624
Query 645 GAGGTTAGGTCGGTGATCAAACGTCACCCAAGTCTTCAGAAGATTTCCTTTGTAGGACAT 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GAGGTTAGGTCGGTGATCAAACGTCACCCAAGTCTTCAGAAGATTTCCTTTGTAGGACAT 684
Query 705 TCTTTAGGTGGCCTGATTGCTAGGTATGCTATTGGGCGTCTTTATGAGCAAGAAT-CCCG 763
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 685 TCTTTAGGTGGCTTGATTGCTAGGTATGCTATTGGGCGTCTTTATGAG-AAGAAAACCCG 743
Query 764 AGAAGAGCTTCCACATAATAGTGACGACATTGGTGATAAATGCTCGATAGAGGAACCGAA 823
||||||||||| || ||| ||||||||||||||||||| |||| ||||||||||||||||
Sbjct 744 AGAAGAGCTTCTACGTAACAGTGACGACATTGGTGATACATGCCCGATAGAGGAACCGAA 803
Query 824 AGCA-AGAATCGCTGGATTAGAGCCTGTGTATTTTATAACTTCTGCAACACCACACCTTG 882
|| | |||||||| ||||| ||||| |||||||||||||||||||||| ||||||||||
Sbjct 804 AG-AGAGAATCGCCGGATTGGAGCCCATGTATTTTATAACTTCTGCAACGCCACACCTTG 862
Query 883 GTTCAAGAGGACATAAACAGGTCCCATTGTTTTCTGGATCTTACACTTTGGAGAGATTAG 942
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 863 GTTCAAGAGGACATAAACAGGTCCCATTGTTTTCTGGATCTCACACTTTGGAGAGATTAG 922
Query 943 CTACGCGTATGTCGGGTTGTCTTGGTAAAACGGGAAAACATCTTTTTCTGGCTGATAGTG 1002
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 CTACGCGTATGTCGGGGTGTCTTGGTAAAACGGGAAAACATCTTTTTCTGGCTGATAGTG 982
Query 1003 ATGGTGGAAAGCCTCCATTACTCCTCCGGATGGTTAAAGATTCTAGAGATCTTAAATTCA 1062
|||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 983 ATGGTGGAAAACCTCCATTACTCCTCCGAATGGTTAAAGATTCTAAAGATCTTAAATTCA 1042
Query 1063 TTTCTGCTTTGCAATGCTTCAAACGGCGTATTGCTTACGCGAATACAAGTTTCGACCACC 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 TTTCTGCTTTGCAATGCTTCAAACGGCGTATTGCTTACGCGAATACAAGTTTCGACCACC 1102
Query 1123 TTGTTGGGTGGAGTACATCGTCTATCCGGCGTCACAATGAGCTTCCTAAGCTTCAACGTG 1182
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1103 TTGTCGGGTGGAGTACATCGTCTATCCGGCGTCACATTGAGCTTCCTAAGCTTCAACGTG 1162
Query 1183 GTCCAGTCAATGAGAAGTATCCTCACATTGTGAATGTTGAAGCACCGGATACTGCAAGTA 1242
|||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1163 GTCCAGTCAACGAGAAGTATCCTCACATTGTGAACGTTGAAGCACCAGATACTGCAAGTA 1222
Query 1243 ACTATGAGGAAGATCATTCAAGGACCAAAGCAGAC-AGGTTCAAGAACTTAGATATGGAA 1301
|| || ||||||||| ||||||||||| ||||| || |||||||| || |||||||||
Sbjct 1223 ACCATAAGGAAGATCGTTCAAGGACCAGTTCAGACGAG-TTCAAGAATTTCGATATGGAA 1281
Query 1302 GAGGAGATGATAAGAGAATTAACAAAACTGAGCTGGGAACGAGTTGATGTTAGTTTCAGA 1361
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 GAGGAGATGATAAGTGAACTAACAAAACTGAGCTGGGAACGAGTTGATGTTAGTTTCAGA 1341
Query 1362 GGAACGCTGCAAAGATTTCTCGCTCACAATACCATTCAGG----TGAAAACAAAGATGAT 1417
||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1342 GGAACCCTGCAAAGATTTTTCGCTCACAATACCATTCAGGCAAGTGAAAACAAAGATGAT 1401
Query 1418 CAATTCAGCTGGAGCAGATGTTATACAACACATGATTGACAATTTTGAGCCATAGGTGTG 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1402 CAATTCAGCTGGAGCAGATGTTATACAACACATGATTGACAATTTTGAGCCATAGGTTTG 1461
Query 1478 ACTTGTGAGATAACGGAAGATGGCAAGCTCCTTCACAAGTTAAA--TTCACTAGGGGAAA 1535
| | | | | |||||||||||||| |||||||||||| ||| ||||||||| ||||
Sbjct 1462 AATAATTA--T--CGGAAGATGGCAAGTTCCTTCACAAGTCAAAAATTCACTAGGAGAAA 1517
Query 1536 TACATTAGTCATATTATCACAATTCTGTCATCTAGTAATGT-TACTA-TACACTATTAGT 1593
|| || ||||||||||||| ||||||||||||||||||||| | || || |||||||||
Sbjct 1518 TATATCAGTCATATTATCAAAATTCTGTCATCTAGTAATGTATGTTACTATACTATTAGT 1577
Query 1594 AGGTTTATCTGTTTTGTTAGCTGTTCTCAGTTACCGGGAAAAT-G--G-AAAATAGAA-T 1648
|||||||||||||||||||| | || ||||||||||| |||| | | ||||||||| |
Sbjct 1578 AGGTTTATCTGTTTTGTTAGTT-TT-TCAGTTACCGGAAAAAAAGAAGGAAAATAGAACT 1635
Query 1649 CATTTTGGATAC 1660
|||||||||||
Sbjct 1636 -ATTTTGGATAC 1646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63344077435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5