BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10060.2
Length=1631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910727 jgi|Araly1|910727|Al_scaffold_0001_981 1851 0.0
> Ahg910727 jgi|Araly1|910727|Al_scaffold_0001_981
Length=1152
Score = 1851 bits (1002), Expect = 0.0
Identities = 1098/1145 (96%), Gaps = 4/1145 (0%)
Strand=Plus/Plus
Query 219 CGCTGCTTACCTCAATATTCAACAACTTCATCTTATCTCTCCAAGATCTGGGGATTTCGT 278
||||||||| |||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 10 CGCTGCTTATCTCAATCTTCAACAACTTCATCTTATCTCTCTAAGATCTGGGGATTCCGT 69
Query 279 ATGCATGGGACCAAGGCAGCAGCTTCTGTTGTAGAAGAACATGTCTCGGGGGCAGAACGT 338
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 ATGCATGGGACCAAAGCAGCAGCTTCTGTTGTAGAAGAACATGTCTCGGGGGCAGAACGT 129
Query 339 GAGGATGAAGAATATGCTGATGTAGATTGGGACAACCTTGGATTCAGTCTTGTACGGACA 398
||||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct 130 GAGGATGAAGAGTATGCTGATGTGGATTGGGACAAGCTTGGATTCAGTCTTATACGGACA 189
Query 399 GATTTCATGTTCGCCACCAAAAGTTGCAGAGACGGAAACTTCGAACAGGGTTACCTTAGC 458
|||| |||||||||||||| |||||||| |||||| ||||||||||||||||||||||||
Sbjct 190 GATTACATGTTCGCCACCAGAAGTTGCAAAGACGGTAACTTCGAACAGGGTTACCTTAGC 249
Query 459 CGTTACGGCAACATCGAGCTCAACCCTGCTGCTGGAATTCTCAACTATGGCCAGGGACTA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 CGTTACGGCAACATCGAGCTCAACCCTGCTGCTGGAATTCTCAACTATGGCCAGGGACTA 309
Query 519 ATAGAGGGGATGAAAGCGTACAGAGGAGAAGACGGTAGGGTTCTTCTCTTCCGTCCAGAG 578
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 310 ATAGAGGGGATGAAAGCGTACAGAGGAGAAGATGGTAGGATTCTTCTCTTCCGTCCAGAG 369
Query 579 CTAAACGCGATGCGTATGAAGATAGGAGCTGAGAGAATGTGTATGCATTCTCCTTCTGTT 638
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 CTAAACGCGATGCGCATGAAGATAGGAGCTGAGAGAATGTGTATGCATTCTCCTTCTGTT 429
Query 639 CATCAGTTTATTGAAGGTGTTAAGCAGACCGTTCTTGCAAACAGGCGTTGGGTTCCTCCT 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CATCAGTTTATTGAAGGTGTTAAGCAGACCGTTCTTGCAAACAGGCGTTGGGTTCCTCCT 489
Query 699 CCGGGCAAAGGCTCGTTGTATCTCAGACCGTTGTTGTTCGGAAGTGGAGCAAGCTTGGGT 758
||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct 490 CCGGGCAAAGGATCGTTGTATCTTAGACCGTTGTTGTTTGGAACCGGAGCAAGCTTGGGT 549
Query 759 GTGGCTGCAGCATCAGAGTACACGTTTCTTGTGTTTGGCTCTCCTGTTCAAAACTACTTC 818
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GTGGCTGCAGCACCAGAGTACACGTTTCTTGTGTTTGGCTCTCCTGTTCAAAACTACTTC 609
Query 819 AAGGAAGGCACAGCGGCGTTGAACCTGTATGTGGAGGAGGTGATTCCACGCGCTTATCTT 878
||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 610 AAGGAAGGCACAGCGGCGTTGAACCTGTACGTGGAGAAGGTGATTCCACGCGCCTATCTT 669
Query 879 GGAGGAACTGGTGGTGTAAAGGCAATATCCAATTACGGTCCAGTGCTTGAAGTGATGAGA 938
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 670 GGAGGAACTGGTGGTGTAAAGGCAATTTCCAATTACGGTCCAGTGCTTGAAGTGATGAGA 729
Query 939 AGAGCAAAATCAAGAGGGTTTTCGGATGTTTTGTATCTTGATGCAGATACTGGGAAGAAC 998
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 730 AGAGCAAAATCAAGAGGTTTTTCGGATGTTTTGTATCTTGATGCAGACACTGGGAAGAAC 789
Query 999 ATAGAAGAAGTCTCTGCTGCTAATATATTCCTTGTGAAGGGCAATACAATAGTGACACCA 1058
||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct 790 ATAGAAGAAGTCTCTGCTGCTAATATATTCCTTGTGAAGGGGAGTACAATAGTGACTCCA 849
Query 1059 GCTACGAGCGGAACGATTCTCGGAGGG-ATCACACGTAAGAGCATAATCGAAATCGCCCT 1117
||||||||||| ||||||||||| ||| ||||||||||||||| | ||||||||||||||
Sbjct 850 GCTACGAGCGGGACGATTCTCGG-GGGTATCACACGTAAGAGCGTCATCGAAATCGCCCT 908
Query 1118 TGATCTTGGTTACAAAGTGGAAGAACGAAGTGTTCCGGTAGAAGAACTGAAGGAAGCTGA 1177
||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 909 TGATCTTGGTTACAAGGTGGAAGAGCGAAGGGTTCCGGTAGAAGAACTGAAGGAAGCAGA 968
Query 1178 AGAAGTTTTCTGCACTGGAACTGCCGCTGGAGTTGCTTCTGTTGGAAGCATCACTTTTAA 1237
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 969 AGAAGTTTTCTGCACTGGAACTGCTGCTGGAGTTGCTTCTGTTGGAAGCATCACTTATCA 1028
Query 1238 GAACACAAGGACTGAGTACAAAGTTGGAGATGGGATTGTTACACAGCAACTTCGATCTAT 1297
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1029 GAACACAAGGACTGAGTACAAAGTTGGAGATGGGATTGTTACTCAGCAACTTCGATCTAT 1088
Query 1298 TCTTGTCGGAATACAAACTGGTTCTATCCAAGACACTAAAGA-TTGGGTTTTGCAGATTG 1356
|||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1089 TCTTCTCGGAATACAAACTGGTTCTATCCAAGACAC-AAAGAATTGGGTTTTGCAGATTG 1147
Query 1357 CCTAA 1361
|||||
Sbjct 1148 CCTAA 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61134843225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5