BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10090.1
Length=2910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471124 jgi|Araly1|471124|fgenesh2_kg.1__1078__AT1G10090.1 4194 0.0
Ahg925155 jgi|Araly1|925155|scaffold_200716.1 1886 0.0
> Ahg471124 jgi|Araly1|471124|fgenesh2_kg.1__1078__AT1G10090.1
Length=2802
Score = 4194 bits (2271), Expect = 0.0
Identities = 2645/2823 (94%), Gaps = 36/2823 (1%)
Strand=Plus/Plus
Query 74 ATCATTATCTTTCTTTAATTTTGTTGGATTTTTTGCATATTGCAAAGTTTAGAACGCGAG 133
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATCATTATCTTTCTTTAAATTTGTTGGATTTTTTGCATATTGCAAAGTTTTGAACGCGAG 60
Query 134 CGAATTCTCCGCGGAATTGGGGTTAAAAGGAAGAACTT-TTAGGGTTTTTGATTCTTCGG 192
||||||||||| |||||| ||||||||||| |||| || |||||||||||||||||||||
Sbjct 61 CGAATTCTCCGGGGAATTCGGGTTAAAAGGTAGAAATTATTAGGGTTTTTGATTCTTCGG 120
Query 193 GTTTTCTCGTGCTTT-GATTCCTTTCAAGTCAAAGCAAAGCATTACCTTTTCTCGTCCAT 251
|||||||| | |||| |||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 121 GTTTTCTCATACTTTCGATTCCTTTCAAGTCAAAGCAAAGCATTGCCTTTTC--GTCCAT 178
Query 252 ATCTTTT-GACGACCTA-AGTTTCT-GCTGTGAATTGTTAAACAGCCATCAGCCTGGGCT 308
| | || || | || | | | || || || | |||| || | || ||
Sbjct 179 GTAAGTCAGAATTGTTACAAATTATTGTT-TGTTTTCTTGATCAGCTATTA---TGTTCT 234
Query 309 TGAT-TAGCCAACCCTGTT-AA---GGCAGGGTTTGAACTAAAAGTGAGATAGTGAGATG 363
| | | | | | | || || ||||||||||||||||||| |||||||||||||||
Sbjct 235 TC-TCT-GTCTTCTTTATTTAATAAGGCAGGGTTTGAACTAAAATTGAGATAGTGAGATG 292
Query 364 GATGTCTCAGCACTTTTAACGTCTGCTGGGATTAATATAGCGATATGCGTAGTGCTTGTA 423
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 293 GATGTCTCATCACTTTTAACGTCTGCTGGGATTAATATAGGGATATGCGTAGTGCTTGTA 352
Query 424 TCGCTTTATTCCATTCTACGAAAGCAGCCAGCCAATTATTGTGTTTACTTTGGTCGATTG 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TCGCTTTATTCCATTCTACGAAAGCAGCCAGCCAATTATTGTGTTTACTTTGGTCGATTG 412
Query 484 CTTTCTGACGGAAGAGTTAAACGTCATGATCCTCGTTGGTATGAGAGGTTCGCGCCCTCT 543
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 413 CTTTCCGACGGAAGAGTTAAACGTCATGATCCTCGTTGGTATGAGAGGTTTGCTCCCTCT 472
Query 544 CCTAGTTGGCTCGTGAAAGCTTGGGAAACCACTGAGGAAGAGATGTTGGCTGCTGCTGGT 603
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 473 CCAAGTTGGCTCGTGAAAGCTTGGGAAACTACTGAGGACGAGATGTTGGCTGCTGCTGGT 532
Query 604 CTGGATGCTGTGGTTTTCATCAGGATGGTCATTTGCAGCATTCGTATTTTCTCAATCGTC 663
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CTGGACGCTGTGGTTTTCATCAGGATGGTCATTTGCAGCATTCGTATTTTCTCAATCGTG 592
Query 664 GCAGTCGTTTGCCTTGCCTTTGTGTTACCTGTTAACTATTATGGACAAAAGA-TGGAGCA 722
|||||||||||| ||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 593 GCAGTCGTTTGCATTGCCTTTGTGCTACCTGTTAACTATTATGGACAAAAGACTGC-GCA 651
Query 723 CAAGGAAGTCCATTTGGAGTCATTGGGAGTATTCACAATTGAGAACCTTAATCCACGCTC 782
|||||| |||||| ||||||| |||||| ||||||||||||||||||| |||| ||||||
Sbjct 652 CAAGGAGGTCCATCTGGAGTCGTTGGGAATATTCACAATTGAGAACCTCAATCAACGCTC 711
Query 783 ACGATGGCTCTGGGTTCATTGTCTCTCATTGTACATCATATCCTCTGCAGCATGTGCTCT 842
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 712 ACGATGGCTCTGGGTTCATTGTCTCGCATTGTACATCATATCCTCTGCAGCATGTGCTCT 771
Query 843 TCTTTACTTTGAGTATAAGAACATAGCCAAAAAGAGGCTTGCCCATATTAGTGGATCTGC 902
|||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct 772 TCTTTACTTTGAATATAAGAACATAGCCAAAAGGAGGCTTGCCCATATTACTGGATCTAC 831
Query 903 CTCAAAGCCAAGTCATTTTACTGTTCTTATTCGTGCTATTCCTCAGTCTCCTGACCAGTC 962
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CTCAAAGCAAAGTCATTTTACTGTTCTTATTCGTGCTATTCCTCAGTCTCCTGACCAGTC 891
Query 963 CTACAGCGAGACAGTGAGCAAATACTTTACAAATTACTATGCACCAAGCTATGTGTCGCA 1022
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 892 CTACAGCGAGACGGTGAGCAAATACTTCACAAATTACTATGCACCAAGCTATGTGTCGCA 951
Query 1023 CCTAATGGTCTACCGTGATGGCTTCATTCACAGACTGATGAATGAGACGGAGAGGATGTG 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CCTAATGGTCTACCGTGATGGCTTCATTCACAGACTGATGAATGAGACGGAGAGGATGTG 1011
Query 1083 TCAGGCTATAAAACATGTTTCTCCTGATTTAAGTTGTAATCCGAGTTTGAAGTCATGCGT 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1012 TCAGGCTATAAAACATGTTTCTCCTGATTTAAGTTGTAATCCGAGTTTGAAGTCATGTGC 1071
Query 1143 CCTTTGTGGACCTGCAGCCACAAATTCTTTTCAAATCATCTCGAACGAGACAGACAGTGT 1202
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1072 CCTTTGTGGACCTGCAGCCACAAATTCTTTTCAAATCCTCTCGAACGAGACAGACAGTGT 1131
Query 1203 CAAAGGATTGGAGCTTGGTGAGTTGACTTTGACTACGACAGAGGAAGAACGTCCCGTTGC 1262
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 CAAAGGAC---AGCTTGGTGAGTTGACTTTGACTACGACAGAGGAAGAACGTCCCGTTGC 1188
Query 1263 TTTTGTGTTTTTCAAGAGTCGTTATGATGCTCTTGTTGTTTCAGAAGTTCTTCAAACACC 1322
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1189 TTTTGTGTTTTTCAAGAGTCGTTATGATGCTCTTGTTGTTTCAGAGGTTCTTCAAACACC 1248
Query 1323 AAATCCTATGTTATGGGTGGCAGACTTGGCTCCAGAGCCTCATGATGTTCACTGGAGAAA 1382
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1249 AAATCCTATGTTATGGGTGGCAGACTTGGCGCCAGAGCCTCATGATGTTCACTGGAGGAA 1308
Query 1383 TCTCAGAATACCTTATCGGCAGCTTTGGATGCGAAGAATAGCAACCCTTGTTGGTGCAAT 1442
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1309 TCTCAGAATACCTTATCGGCAACTTTGGATGCGAAGAATAGCAACCCTTGTTGGTGCAGT 1368
Query 1443 TGCCTTCATGTTTGTGTTTCTTTTTCCTGTTACCTTTGTTCAAGGGCTGACTCAACTACC 1502
|||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct 1369 TGCCTTCATGTTTGTGTTTCTTTTCCCTGTTGCCTTTGTTCAAGGGCTGACTCAGCTACA 1428
Query 1503 AACGTTATCCAAGAATTTTCCTTTTCTAAAAGACCTCTTGAACA-GGAGGTTTATGGAGC 1561
|||| |||||||||||||||||||||||| |||||||||| ||| || |||||||| |||
Sbjct 1429 AACGCTATCCAAGAATTTTCCTTTTCTAAGAGACCTCTTGCACAAGG-GGTTTATGAAGC 1487
Query 1562 AGGTCATCACAGGGTATTTACCAAGTGTGATTTTGGTTCTATTCTTTTATACCGTTCCGC 1621
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1488 AGGTCATCACAGGGTACTTACCAAGTGTGATTTTGGTTCTATTCTTTTATGCCGTTCCGC 1547
Query 1622 CATTGATGATGTACTTTTCAACCTTGGAGGGATGTGTTTCTCGGAGTCAAAGaaaaaaaa 1681
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1548 CATTGATGATGTACTTTTCAACCTTGGAGGGATGTGTTTCTCGGAGTCTAAGAAAGAAAA 1607
Query 1682 GTGCATGTCTCAAAATTTTATACTTCACCATCTGGAATGTGTTCTTCGTCAATATTCTAT 1741
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1608 GTGCATGTATCAAAATTTTATACTTTACCATCTGGAATGTGTTCTTCGTCAATATTCTAT 1667
Query 1742 CAGGCTCTGTTATCAGGCAGTTTACCGTCTTGAATAGTGTGAGGGACGTACCTGCACAAC 1801
|||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||
Sbjct 1668 CAGGCTCTGTTATCAGGCAGTTGAGCGTCTTGTCTAGTGTGAGGGACATACCTGCACAAC 1727
Query 1802 TTGCGAAACTTGTTCCAGCACAGGCTGGCTTCTTCATGACCTATTGTTTCACGTCTGGTT 1861
|||||||| | ||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1728 TTGCGAAAGTAGTTCCAGCACAGGTTGGCTTCTTCATGACCTATTGTTTCACATCTGGTT 1787
Query 1862 GGGCCGGTTTGGCATGTGAAATCATGCAACCTGTAGGTCTTATTTGGAATCTGATTGCAA 1921
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 1788 GGGCCGGTTTGGCATGTGAAATCATGCAACCTGTATGTCTTATCTGGAATCTGATAGCAA 1847
Query 1922 AAGTTATTGTTAAGAACAAGGAGGAGTCATATGAAACACTTAGGTTTCCCTACCATACAG 1981
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1848 AAGTTATTGTCAAGAACAAGGAGGACTCATATGAAACACTTAGGTTTCCGTACCATACAG 1907
Query 1982 AAATTCCAAGACTACTTTTGTTCGGGCTCCTGGGTTTCACCAATTCAGTCATAGCGCCTC 2041
||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1908 AAATTCCTCGACTACTTTTGTTCGGGCTCCTAGGTTTCACAAATTCAGTCATAGCGCCTC 1967
Query 2042 TGATACTGCCGTTTCTGCTGATCTACTTTTTCTTCGCATATCTTATATACAAAAATCAGA 2101
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 TAATACTGCCGTTTCTGCTGATCTACTTTTTCTTCGCATATCTTATATACAAAAATCAGA 2027
Query 2102 TAATCAACGTCTATATTACAAAGTATGAAAGCGGTGGACAATATTGGCCTGTTTTTCACA 2161
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2028 TAATCAACGTCTATATTACAAAATATGAAAGCGGTGGACAATATTGGCCTGTTTTTCACA 2087
Query 2162 ACACTACAATCTTTTCACTGATCTTGTCGCAAGTTATAGCTCTAGGCTTTTTCGGGTTAA 2221
|||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 2088 ACACGACAATCTTTTCACTGATCTTGTCGCAAATTATAGCGCTAGGCTTTTTCGGTTTAA 2147
Query 2222 AGCTATCAACGGTTGCTTCAGGTTTCACCATCCCGTTAATCCTTC-TCACTCTTCTATTT 2280
|||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 2148 AGCTATCAACGGTTGCTTCAGGTTTCACCATCCCGTTAATT-TTCCTTACTCTTCTATTT 2206
Query 2281 AGTGAGTATTGCCGGCAAAGGTTTGCGCCCATATTCCAGAAATATCCAGCCGAGATTCTT 2340
|||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct 2207 AGTGAGTATTGCCGGCAAAGATTTGCACCCATATTCAAGAAATATCCAGCCGAGATTCTT 2266
Query 2341 ATCGCTATGGACAGAGCAGATGAGATGACAGGAAAGATGGAAGAGATACATAACAACTTG 2400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2267 ATCGCTATGGACAGAGCAGATGAGATGACAGGAAAGATGGAAGAGATACATAACAACTTG 2326
Query 2401 AAAGTTGCATACTCTCAGATACCAACGTGTTCTGAAGAATCCAGCAAAGCTGGTTGCACT 2460
|||| |||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||
Sbjct 2327 AAAGCTGCATACTCTCAGATACCAACGTGTTCTGAGGAATCGAGCAAAGCTGGTTTCACT 2386
Query 2461 TCTCCTTGCTCAGATCAGGAGTTACCAGATTCTGAAGAGTTGAAGCCTGAGAAAGAGAAT 2520
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 2387 TCTCCTTGCTCAGATCAGGAGTTACCAGATTCTGAACAGTTGAAACCTGAGAAAGAGAAT 2446
Query 2521 CTTAAAGCTGATTACATATGGGAGTTCCAGAGAAGTAAATCTGGTCTTGATCTTGAGGTG 2580
| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 2447 CATAAAGCTGATTACATATGGGCGTTCCAGAGAAGTAAATCTGGTCATGATCTTGAGGTG 2506
Query 2581 AAATCCTGTCCCAGTGCTTCCCCAATTCGTAATTCCCCAGGGTTTGCCGAGATCTACAAA 2640
|||||||||||||||||||| |||| |||| ||||||||| |||||| ||||||||||||
Sbjct 2507 AAATCCTGTCCCAGTGCTTCACCAAATCGTTATTCCCCAGCGTTTGCTGAGATCTACAAA 2566
Query 2641 CGAACATAGATACTTGAGTTACAATGTATACTTTATAACTCTGCAGATGAA-AAGGTGTT 2699
|||||||||||||||||||||||||||||| ||| | |||||||||||| ||| ||||
Sbjct 2567 CGAACATAGATACTTGAGTTACAATGTATA-TTTG-A-CTCTGCAGATGATTAAG-TGTT 2622
Query 2700 TTTGCAGTTGAGTTACAATTTTAGTAGTTGAAACCCTTATGGGTGATGAAAGTAAGAAGT 2759
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2623 T--GCAGTTGAGTTACAATTTTAGTAGTTGAAGCCCTTATGGGTGATGAAAGTAAGAAGT 2680
Query 2760 GGGGAAAGCCATTGAAACGTATATACAGTTTTGCCTCCTAAAATGAAATGTAAATTTGGA 2819
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2681 GGGGAAAACCATTGAAACGTATATACAGTTTTGCCTCCTAAAATGAAATGTAAATTTGAA 2740
Query 2820 GTTACTGCAGGAGGAAA-TGAAACTATCCTTGGAAACACTTGTCTACAAGTACAATAGAC 2878
||||||||||||||||| ||||||| | ||||||| ||||| ||||||||||||||||||
Sbjct 2741 GTTACTGCAGGAGGAAAATGAAACTTTGCTTGGAA-CACTTTTCTACAAGTACAATAGAC 2799
Query 2879 GAT 2881
|||
Sbjct 2800 GAT 2802
> Ahg925155 jgi|Araly1|925155|scaffold_200716.1
Length=2335
Score = 1886 bits (1021), Expect = 0.0
Identities = 1888/2298 (82%), Gaps = 94/2298 (4%)
Strand=Plus/Plus
Query 357 TGAGATGGATG-TCTCAGCACTT-TTAACGTCTGCTGGGATTAATATAGCGATATGCGTA 414
||||||||| | | ||||| ||| || || ||||| ||||||||||| |||||||| ||
Sbjct 17 TGAGATGGA-GATATCAGCTCTTCTT-ACATCTGCCGGGATTAATATCTCGATATGCATA 74
Query 415 GTGCTTGTATCGCTTTATTCCATTC-TACGAAAGCAGCCAGCCAATTATTGTGTTTACTT 473
|||||| | || |||||||| || | || |||| || ||| ||||||| ||||| || ||
Sbjct 75 GTGCTTTTGTCACTTTATTCTATACTTAGGAAA-CAACCATCCAATTACTGTGTATATTT 133
Query 474 TGGTCGATTGCTT-TCTGACGGAAGAGTTAAACGTCATGATCC-TCGTTGGTATGAGAGG 531
||| ||| |||| | || || | | || |||| ||||||| | |||||||||||||
Sbjct 134 TGGCCGAAGGCTTGTTTG-TGGTGGGGCTAGACGTTATGATCCGT-TTTGGTATGAGAGG 191
Query 532 TTCGCGCCCTCTCCTAGTTGGCTCGTGAAAGCTTGGGAAACCACTGAGGAAGAGATGTTG 591
|| | ||| ||||| |||||||| || ||||| |||||||| | ||| || ||| | ||
Sbjct 192 TTTGTGCCGTCTCCAAGTTGGCTGGTTAAAGCATGGGAAACTAGTGAAGATGAGTTATTA 251
Query 592 GCTGCTGCTGGTCTGGATGCTGTGGTTTTCATCAGGATGGTCATTTGCAGCATTCGTATT 651
|||||||||||||| |||||||| || ||| | ||||||||| ||| |||||||||||||
Sbjct 252 GCTGCTGCTGGTCTTGATGCTGTTGTCTTCCTTAGGATGGTCCTTTTCAGCATTCGTATT 311
Query 652 TTCTCAATCGTCGCAGTCGTTTGCCTTGCCTTTGTGTTACCTGTTAACTATTATGGACAA 711
|||| || || || || ||||| |||||||||| | |||||||| |||||||| |||
Sbjct 312 TTCTTTATAGTTGCTGTTATTTGCATTGCCTTTGTACTGCCTGTTAATTATTATGGGCAA 371
Query 712 AAGATGGAGCACAAGGAAGTCCATTTGGAGTCATTGGGAGTATTCACAATTGAGAACCTT 771
||||| ||| |||||| ||||||||||||||| | ||| |||||||| || || |||
Sbjct 372 CCGATGGTGCATAAGGAAATCCATTTGGAGTCATCCGAAGTGTTCACAATCGAAAATCTT 431
Query 772 AATCCACGCT-CACGATGGCTCTGGGTTCATTGTCTCT-CATTGTACATCATATCCTCTG 829
|| | ||| || |||||| |||||||||||||| | || ||||||| ||| |||| |
Sbjct 432 AAAGAAGGCTCCA-AATGGCTGTGGGTTCATTGTCT-TGCACTGTACATTATAACCTCAG 489
Query 830 CAGCATGTGC-TCTTCTTTACTTTGAGTATAAGAACATAGCCAAAAAGAGGCTTGCCCAT 888
| |||||| | ||||||||| |||||||||| || |||||| |||| |||||||| |||
Sbjct 490 CGGCATGT-CTTCTTCTTTATTTTGAGTATAGGACCATAGCTAAAATGAGGCTTGGACAT 548
Query 889 ATTAGTGGATCTGCCTCAAAGCCAAGTCATTTTACTGTTCTTATTCGTGCTATTCC-TCA 947
|||| ||||| |||||||||||||||||| ||||| |||||||| ||||||||||| |
Sbjct 549 ATTACTGGATGTGCCTCAAAGCCAAGTCAATTTACCGTTCTTATCCGTGCTATTCCAT-G 607
Query 948 GTCTCCTGACCAGTCCTACAGCGAGACAGTGAGCAAATACTTTACAAATTACTATGCACC 1007
||||||||| || || |||||||| ||| ||||||||| ||| |||||||||||| || |
Sbjct 608 GTCTCCTGAGCAATCTTACAGCGACACACTGAGCAAATTCTTCACAAATTACTATTCATC 667
Query 1008 AAGCTATGTGTCGCACCTAATGGTCTACCGTGATGGCT-TCATTCACAGACTGATGAATG 1066
|||||||||||| |||| ||||||||||| | |||| | ||||||| |||||| || ||
Sbjct 668 AAGCTATGTGTCCCACCAAATGGTCTACCATAATGG-TATCATTCAGAGACTGTTGCGTG 726
Query 1067 AGACGGAGAGGATGTGTCAGGCTATAAAACATGTTTCTCCTG-ATTTAAGTTGTAATCCG 1125
|| ||||||||||||| ||| || ||||||| |||||||||| | | || |||||| ||
Sbjct 727 AGGCGGAGAGGATGTGCCAGACTCTAAAACACGTTTCTCCTGAAATCAA-TTGTAAACCA 785
Query 1126 AGTTTGAAGTCATGCGTCCTTTGT---GGACCTGCAGCCACAAATTCTTTTCAAATCATC 1182
||||||||| ||||| || ||||| |||||| ||||||||||||||||||| ||| |
Sbjct 786 AGTTTGAAGCCATGCATCTTTTGTGGAGGACCTACAGCCACAAATTCTTTTCATATCCTA 845
Query 1183 TCGAACGAGACAGACAGTGTCAAAGGATTGGAGCTTGGTGAGTTGACTTTGACTACGACA 1242
|| || ||| | |||||||| |||||| |||||||||||||||||||| |||||||||||
Sbjct 846 TCTAATGAGGCGGACAGTGTGAAAGGAATGGAGCTTGGTGAGTTGACTATGACTACGACA 905
Query 1243 GAGGAAGAACGTCCCGTTGCTTTTGTGTTTTTCAAGAGTCGTTATGATGCTCTTGTTGTT 1302
||| |||||||||| | |||||||||||||||||| | || ||||||||||||||||||
Sbjct 906 GAGCAAGAACGTCCAGCTGCTTTTGTGTTTTTCAAAACACGCTATGATGCTCTTGTTGTT 965
Query 1303 TCAGAAGTTCTTCAAACACCAAATCCTATGTTATGGGTGGCAGACTTGGCTCCAGAGCCT 1362
||||| ||||| ||| || ||||||||||| |||||||| ||||||| |||||||| |||
Sbjct 966 TCAGAGGTTCTACAATCATCAAATCCTATGCTATGGGTGACAGACTTAGCTCCAGAACCT 1025
Query 1363 CATGATGT-TCACTGG-AGAAATCTCAGA-ATACCTTATCGGCAGCTTTGGATGC-GAAG 1418
|| ||||| | | ||| || ||||||| | || |||||||| || |||||||| | |||
Sbjct 1026 CACGATGTGT-ATTGGAAG-AATCTCA-ACATTCCTTATCGACAACTTTGGATACGGAA- 1081
Query 1419 AATAGCAACCCTTGTTGGTGCAATTGCCTTCATGTTTGTGTTTCTTTTTCCTGTTACCTT 1478
|||||||||||||||||||||| |||| |||||||||||||||||| |||| || |||||
Sbjct 1082 AATAGCAACCCTTGTTGGTGCAGTTGCTTTCATGTTTGTGTTTCTTATTCCCGTGACCTT 1141
Query 1479 TGTTCAAGGGCTGACTCAACTACCAAC-GTTATC-CAAGAATTTTCCTTTTCTAAAAGAC 1536
|||||||||||||||||||| | | | | || || | | ||||||||||||| || |
Sbjct 1142 CATTCAAGGGCTGACTCAACTA-GAGCAGCTGTCTCACGCA-TTTCCTTTTCTAAGAGGC 1199
Query 1537 CTCTTGA--ACAGGAGGTTTATGGAG-CAGGTCATCACAGGGTATTTACCAAGTGTGATT 1593
|||||| | || | |||||| || ||||||||||||||||| ||||| ||||||||
Sbjct 1200 ATCTTGAGGA-AGCA-GTTTAT-AAGCCAGGTCATCACAGGGTACTTACCCAGTGTGATC 1256
Query 1594 TTGGTTCTATTCTTT-TATACCGTTCCGCCATTGATGATGTACTTTTCAACCTTGGAGGG 1652
||| ||||||| ||| ||| ||||||| |||||||||||||| ||||| ||||||||||
Sbjct 1257 TTGATTCTATT-TTTCTATGCCGTTCCACCATTGATGATGTATTTTTCGGCCTTGGAGGG 1315
Query 1653 ATGTGTTTCTCGGAGTCA-AAGaaaaaaaaGTGCATGTC-TCAAAATTTTATACTTCACC 1710
|||| |||| |||||| | ||| || || ||||| || | ||||| | ||||| || |||
Sbjct 1316 ATGTATTTCACGGAGT-ATAAGGAAGAAGAGTGCTTG-CATCAAAGTCTTATATTTTACC 1373
Query 1711 ATCTGGAATGTGTTCTTCGTCAATATTCTATCAGGCTCTGTTATCAGGCAGTTTACCGTC 1770
|| ||||||||||||||||| |||||| |||| || |||||||||||||| | | |||
Sbjct 1374 ATTTGGAATGTGTTCTTCGTGAATATTTTATCGGGGTCTGTTATCAGGCAACTGAATGTC 1433
Query 1771 TTGAATAGTGTGAGGGACGTACCTGCACAACTTGCGAA-ACT-TGTTCCAGCACAGGCTG 1828
|| |||||| || ||| |||||||||||||||| || | | || ||| |||||||||
Sbjct 1434 TTTTCTAGTGTCAGAGACATACCTGCACAACTTGC-AAGA-TCAGTGCCAACACAGGCTG 1491
Query 1829 GCTTCTTCATGACCTATTGTTTCACGTCTGGTTGGGCCG-GTTTGGCATGTGAAATCATG 1887
||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||| |||
Sbjct 1492 GCTTCTTCATGACCTATTGTTTCACATCTGGTTGGGC-GAGTTTGGCTTGTGAAATAATG 1550
Query 1888 CAACCTGTAGG-TCTTATTTGGAATCTGATTGCAAAAGTTATTGTTAAGAACAAGGAGGA 1946
|| ||| | || |||||| ||||||||| | ||||||||| || |||||| |||| ||
Sbjct 1551 CAGCCTAT-GGCTCTTATCTGGAATCTGGTAGCAAAAGTTGTTACCAAGAACGAGGATGA 1609
Query 1947 GTCATATGAAACACTTAGGTTTCCC-TACCATACAGAAATTCCAAGACTACTTTTGTTCG 2005
||||||||||||||||||||| ||| ||||| || |||||||| | || |||||||| |
Sbjct 1610 GTCATATGAAACACTTAGGTT-CCCATACCACACCGAAATTCCTCGGCTGCTTTTGTTTG 1668
Query 2006 GGCTCCTGGGTTTCACCAATTCAGTCATAGCGCCTCTGATACTGCCGTTTCTGCTGATCT 2065
||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| |
Sbjct 1669 GGCTCCTGGGTTTCACCAATTCAGTCATAGCACCACTGATACTGCCGTTTTTGCTGATAT 1728
Query 2066 ACTTTTTC-TTCGCATATCTTATATACAAAAATCAGATAATCAACGTCTATATTACAAAG 2124
|||||||| || |||||||| |||||||||||||||||| ||||||| ||||||||||||
Sbjct 1729 ACTTTTTCCTT-GCATATCTCATATACAAAAATCAGATACTCAACGTGTATATTACAAAG 1787
Query 2125 TATGAAAGCGGTGGACAATATTGGCCTGTTTTTCACAACACTACAATCTTTTCACTGATC 2184
|| ||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||
Sbjct 1788 TACGAAAGCGGTGGACAATACTGGCCTATTTTCCACAACACAACAATCTTTTCACTGATC 1847
Query 2185 TTGTCGCA-AGTTATAGCTCTAGGCTTT-TTCGGGTTAAAGCTATCAACGGTTGCTTCAG 2242
||| | || | |||||||| | || ||| ||||| ||||||||||||||||||||||| |
Sbjct 1848 TTGACACAGA-TTATAGCTTTGGG-TTTCTTCGGATTAAAGCTATCAACGGTTGCTTCGG 1905
Query 2243 GTTTCACCATCCCGTTAATCCTTCTCACTCTT-CTATTTAGTGAGTATTGCCGGCAAAGG 2301
||||||| || || || || ||||||||| || || |||||||||||||| ||||| |||
Sbjct 1906 GTTTCACTATACCATTGATTCTTCTCACT-TTGCTTTTTAGTGAGTATTGTCGGCAGAGG 1964
Query 2302 TTTGCGCCCATATTCCAGAAATATCCAGCCGAGATTCTTATCGCTATGGACAGAGCAGAT 2361
||||||||||| ||| | ||| |||| ||| || |||| || | ||||||||| || |||
Sbjct 1965 TTTGCGCCCATTTTCAACAAAAATCCTGCCCAGGTTCTCATAGATATGGACAGGGCTGAT 2024
Query 2362 GAGATGACAGGAAAGATGGAAGAGATACATAACAACTTG-A-AAGTTGCATACTCTCAGA 2419
|| || ||||||||||||||||| ||||||| || ||| | || | | |||||| ||||
Sbjct 2025 GAAATCTCAGGAAAGATGGAAGAGTTACATAAAAAATTGCATAA-T-GTATACTCGCAGA 2082
Query 2420 TACCA--ACGTGTTCTGAAGAA-TC--C-AGCAAAGCTGGTTGCACTTCTCCTTGCTCAG 2473
||||| || | |||| ||| || | || ||||||| |||| | ||||| | |
Sbjct 2083 TACCATTACAC-T-CTGA-GAAATCATCGAGTAAAGCTGAATGCAGTAATCCTTTCAAAA 2139
Query 2474 ATCAGGAGTTACCAGATTCTGAAGAGTTGAAGCCTGAGAAAGAGAAT-CTTAAAGCTGAT 2532
||||||||||||||||| ||||| | |||||||| ||| ||| | || | | ||| ||
Sbjct 2140 ATCAGGAGTTACCAGATCCTGAAAAATTGAAGCCAGAGGAAGGGGATGCG-ATAGC-GAA 2197
Query 2533 TACA-T-ATGGG-AGT-TCCAGAG-AAGTAAATCTGGTCTTGATCTTGAGG-TGAAATCC 2586
| | | ||||| | | || || | || | ||||||||| || | ||| | | || |||
Sbjct 2198 -AGAGTTATGGGGA-TATCAAG-GCAA-TGAATCTGGTCAAGAACATGACGCT-AAGTCC 2252
Query 2587 TGTCCCAGTGCTTCCCCA 2604
|||||||||||||| |||
Sbjct 2253 TGTCCCAGTGCTTCACCA 2270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109852266580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5