BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10110.1
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312054 jgi|Araly1|312054|fgenesh1_pm.C_scaffold_1000834 1664 0.0
Ahg919766 jgi|Araly1|919766|scaffold_101047.1 1589 0.0
> Ahg312054 jgi|Araly1|312054|fgenesh1_pm.C_scaffold_1000834
Length=1206
Score = 1664 bits (901), Expect = 0.0
Identities = 1110/1207 (92%), Gaps = 29/1207 (2%)
Strand=Plus/Plus
Query 10 GATGATGGTACTCCGAATTGGTCGGAGCTTGTCACAGACATCTTATCATTGGTTTTCAAG 69
|||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 10 GATGGTGATACTCCGAATTGGTCGGAACTTGTCACAGACATCTTATCATTGGTTTTCAAG 69
Query 70 CACTTGAGCTTTACAGATTTTGCTCGAGCTAAGACCGTTTGTTCGTCGTGGTACTTTGCT 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 CACTTGAGCTTTACAGATTTTGCTCGAGCTAAGACCGTTTGTTCGTCGTGGTACTTTGCT 129
Query 130 TCCAAATCATCCTCACCTAGAAAAAATCATACTCCGTGGTTGATTCTCTACCAAGACACG 189
|||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct 130 TCCAAATCATCCTCACCTAGAAAAAACCATACTCCGTGGCTGATTCTCTACGAAGACACG 189
Query 190 CACTGGCTCATGTTTAATTCCGATGAAGAAAAGTTTTACAGAACAGTATACCTAGGTCGC 249
|||||||||||||||||||| || ||||||||||||||||||||| | |||||||||||
Sbjct 190 CACTGGCTCATGTTTAATTCGGAAGAAGAAAAGTTTTACAGAACACAAAACCTAGGTCGC 249
Query 250 TTTGCCGAGTGTCGTGGCGTGGCGTCTTGTGGGAGTTGGGTCTTGGTCTTTGACAAGGAA 309
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 250 TTTGCCGAGTGTCGTGGCGTGGCGACTTGTGGGAGTTGGGTCTTGGTCTTTGACAAGGAA 309
Query 310 ATCAATTTCTACATCATTAATCCCTTCACGCCACAGCTCATTCGTCTCCCACCTCTTGAA 369
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 310 ATAAATTTCTACATCATTAATCCCTTCACGCCAGAGCTCATTCGTCTCCCACCTCTTGAA 369
Query 370 TATTCAAACACCGGCACAAAGTTCGAGCGACCCGGTAACTATGTATTCCACCTACTCTTC 429
|||||||||| |||||||||||||||| |||||||||||||| | |||||||||||||||
Sbjct 370 TATTCAAACAGCGGCACAAAGTTCGAGAGACCCGGTAACTATATTTTCCACCTACTCTTC 429
Query 430 GACGATCGCCACAGAACAAGCCGTGCAATAGTGGGGAATTCGGTTTTGTGGGTAGACGAA 489
|||||| | | ||| || | ||| | ||||||||||||||||| ||||||||||||||
Sbjct 430 GACGATTTC-A--GAATAAACAGTGTAGTAGTGGGGAATTCGGTTCTGTGGGTAGACGAA 486
Query 490 AAAACCAAAGACTACTTAGTTGTGTGGTCGTACAAAGAGGCATTTGTTCCGAGTCCCTAC 549
||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct 487 AAAACCAAAGACTACTTAGTTGTGTGGTCGTACAAAGAGGCATGTCATCCGGGTCCCTAC 546
Query 550 ATATATTATTGCAGTAAAAGAGGGCAAGAGTGGTTTGAGATTCCGGCAAGCACTTGTGGG 609
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 547 ATATATTATTGCAGGAAAAGAGAGCAAGAGTGGTTTGAGATTCCGGCAAGCACTTGTGGG 606
Query 610 AAGCTATTCCGGTGTTTGGATATGGCCTACAAAGACGAAAAGCTTTACATACTTACTTCC 669
|||||| || |||||||||||||||||||||||||||| ||||||||||||| ||||| |
Sbjct 607 AAGCTAATCGGGTGTTTGGATATGGCCTACAAAGACGAGAAGCTTTACATACATACTTAC 666
Query 670 AATGGTAGCATAAGAATCTTGGACTTTTCTCTTGGAGACTTGCCTAGACAAATCGACAAT 729
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AATGGTAGCATCAGAATTTTGGACTTTTCTCTTGGAGACTTGCCTAGACAAATCGACAAT 726
Query 730 CATCCATACTCCCATCGACCGTTTGTTACCGAGTTTCCTAATCATAAGATGGGAATGAGA 789
||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 727 CATCCATTCTCCCATCGACCGTTTGTTACCGAGTTTCCTAATCGTAGGACGGGAATGAGA 786
Query 790 CTAACCACGTCTGGGGATGTTGTGATGATCCAATGCGTGACAACAGGCACTCACAAAAGA 849
|||||||||| ||| |||||||||||||||||||| |||||| | |||||||||||||
Sbjct 787 CTAACCACGTTTGGAGATGTTGTGATGATCCAATGGGTGACA---GTCACTCACAAAAGA 843
Query 850 AGCCCGTTCCGAATCTTCAAGTTGAGTAGCATTACAGAGACGAAGGAGTC-TT-C---T- 903
| |||||||| ||||| |||| ||||||||| | ||||||||||||||| || | |
Sbjct 844 ATCCCGTTCCAAATCTACAAGATGAGTAGCAAAAGAGAGACGAAGGAGTCGTTTCCGGTG 903
Query 904 C-ACGA-GGTG-GT--A-G--G-GT---GGGAGACAGTGCATTCTTTCGAGGACGAGGAG 951
| | | || | | | | | || |||||| |||||||||||||||||||||||||
Sbjct 904 CTAGGGTGGGGCGACGATGCTGCGTACTGGGAGAGAGTGCATTCTTTCGAGGACGAGGAG 963
Query 952 TCGTTGGTTTGGGATTTGAGCGTCACTTTACCAACCAAAGGCGTATCCGGAATCAAGAAA 1011
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 964 TCGTTGGTTTGGGATTTGAGCGTCACTTTACCAACCAAAGGCGTATCGGGAATCAAGAAA 1023
Query 1012 GATTCCATATATTACTGTCACACTTCTCTATCATCATCTATTCGGGAAACATG-TGCTTA 1070
||||||||||||| ||||||||||||| ||| ||||||||||||||| || ||| ||
Sbjct 1024 GATTCCATATATTTCTGTCACACTTCT-TAT--TCATCTATTCGGGAAGT-TGCTGCCTA 1079
Query 1071 TGAGATTCCTACGCACAAGATCACTGCATATGACATTCCTAAGCAGGATATCAAACCTAT 1130
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1080 TGAGATTCCTACGCACAAGATCACTGCATATGAGATTCCTAAGCAGGATATCGAACCTAT 1139
Query 1131 TCGACACCGCGGCATCTTGATTGGAGAGGCTCGTTGGTTCGTTCCTTGTTTCGGTGCTGG 1190
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1140 TCGACACCGCGGCATCTTGATTGGAGAGGCTCGTTGGTTCATTCCTTGTTTTGGTGCTGG 1199
Query 1191 TGAATAA 1197
|||||||
Sbjct 1200 TGAATAA 1206
> Ahg919766 jgi|Araly1|919766|scaffold_101047.1
Length=2900
Score = 1589 bits (860), Expect = 0.0
Identities = 1103/1214 (91%), Gaps = 42/1214 (3%)
Strand=Plus/Plus
Query 1 GCAACAGATGATGATGGTACTCCGAATTGGTCGGAGCTTGTCACAGACATCTTATCATTG 60
|||||||||| | || |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 48 GCAACAGATG--G-TGATACTCCGAATTGGTCGGAACTTGTCACAGACATCTGGTCATTG 104
Query 61 GTTTTCAAGCACTTGAGCTTTACAGATTTTGCTCGAGCTAAGACCGTTTGTTCGTCGTGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 GTTTTCAAGCACTTGAGCTTTACAGATTTTGCTCGAGCTAAGACCGTTTGTTCGTCGTGG 164
Query 121 TACTTTGCTTCCAAATCATCCTCACCTAGAAAAAATCATACTCCGTGGTTGATTCTCTAC 180
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 165 TACTTTGCTTCCAAATCATCCTCACCTAGAAAAAACCATACTCCGTGGCTGATTCTCTAC 224
Query 181 CAAGACACGCACTGGCTCATGTTTAATTCCGATGAAGAAAAGTTTTACAGAACAGTATAC 240
|||||||||||||||||||||||||||| || ||||||||||||||||||||| | ||
Sbjct 225 GAAGACACGCACTGGCTCATGTTTAATTCGGAAGAAGAAAAGTTTTACAGAACACAAAAC 284
Query 241 CTAGGTCGCTTTGCCGAGTGTCGTGGCGTGGCGTCTTGTGGGAGTTGGGTCTTGGTCTTT 300
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 285 CTAGGTCGCTTTGCCGAGTGTCGTGGCGTGGCGAGTTGTGGGAGTTGGGTCTTGGTCTTT 344
Query 301 GACAAGGAAATCAATTTCTACATCATTAATCCCTTCACGCCACAGCTCATTCGTCTCCCA 360
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 345 GACAAGGAAATAAATTTCTACATCATTAATCCCTTCACGCCAGAGCTCATTCGTCTCCCA 404
Query 361 CCTCTTGAATATTCAAACACCGGCACAAAGTTCGAGCGACCCGGTAACTATGTATTCCAC 420
||||||||||||||||||| |||||||||||||||| |||||||||||||| | ||||||
Sbjct 405 CCTCTTGAATATTCAAACAGCGGCACAAAGTTCGAGAGACCCGGTAACTATATTTTCCAC 464
Query 421 CTACTCTTCGACGATCGCCACAGAACAAGCCGTGCAATAGTGGGGAATTCGGTTTTGTGG 480
||||||||||||||| | | ||| || | ||| | ||||||||||||||||| |||||
Sbjct 465 CTACTCTTCGACGATTTC-A--GAATAAACAGTGTAGTAGTGGGGAATTCGGTTCTGTGG 521
Query 481 GTAGACGAAAAAACCAAAGACTACTTAGTTGTGTGGTCGTACAAAGAGGCATTTGTTCCG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 522 GTAGACGAAAAAACCAAAGACTACTTAGTTGTGTGGTCGTACAAAGAGGCATGTCATCCG 581
Query 541 AGTCCCTACATATATTATTGCAGTAAAAGAGGGCAAGAGTGGTTTGAGATTCCGGCAAGC 600
|| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 582 GGTGCCTACATATATTATTGCAGGAAAAGAGAGCAAGAGTGGTTTGAGATTCCGGCAAGC 641
Query 601 ACTTGTGGGAAGCTATTCCGGTGTTTGGATATGGCCTACAAAGACGAAAAGCTTTACATA 660
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 642 ACTTGTGGGAAGCTATTCGGGTGTTTGGATATGGCCTACAAAGACGAGAAGCTTTACATA 701
Query 661 CTTACTTCCAATGGTAGCATAAGAATCTTGGACTTTTCTCTTGGAGACTTGCCTAGACAA 720
| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 702 CATACTTACAATGGTAGCATCAGAATCTTGGACTTTTCTCTTGGAGACTTGCCTAGACAA 761
Query 721 ATCGACAATCATCCATACTCCCATCGACCGTTTGTTACCGAGTTTCCTAATCATAAGATG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 762 ATCGACAATCATCCATACTCCCATCGACCGTTTGTTACCGAGTTTCCTAATCGTAGGAGG 821
Query 781 GGAATGAGACTAACCACGTCTGGGGATGTTGTGATGATCCAATGCGTGACAACAGGCACT 840
||||||||||||||||||||||| |||||||||||||||||||| |||||| | ||||
Sbjct 822 GGAATGAGACTAACCACGTCTGGAGATGTTGTGATGATCCAATGGGTGACA---GTCACT 878
Query 841 CACAAAAGAAGCCCGTTCCGAATCTTCAAGTTGAGTAGCATTACAGAGACGAAGGAGTC- 899
|||||||||| |||||||| ||||| |||| ||||||||| | |||||||||||||||
Sbjct 879 CACAAAAGAATCCCGTTCCAAATCTACAAGATGAGTAGCAAAAGAGAGACGAAGGAGTCG 938
Query 900 TT-C---T-CA---------CGA-G--GT-G--G-TAG-GG--TGGGAGACAGTGCATTC 935
|| | | || ||| | | | | | | || ||||||| |||||||||
Sbjct 939 TTTCGGGTGCAAGGGTTGGGCGACGACGACGATGCT-GCGGACTGGGAGAGAGTGCATTC 997
Query 936 TTTCGAGGACGAGGAGTCGTTGGTTTGGGATTTGAGCGTCACTTTACCAACCAAAGGCGT 995
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 998 TTTCGAGGACGAGGAGTCGTTGGTTTGGGATTTGAGCGTCACTTTGCCAACCAAAGGCGT 1057
Query 996 ATCCGGAATCAAGAAAGATTCCATATATTACTGTCACACTTCTCTATCATCATCTATTCG 1055
|||||| |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1058 ATCCGGTATCAAGAAAGATTCCATATATTACTGTCACACTTCTA-A--ATCATCTATTCC 1114
Query 1056 GGAAACATG-TGCTTATGAGATT-CCTACGCACAAGATCACTGCATATGACATTCCTAAG 1113
|||| || | | ||||| ||| ||||||||||||||| |||| ||||| |||||||||
Sbjct 1115 GGAAGT-TGCTACCTATGA-ATTTCCTACGCACAAGATCTCTGCGTATGAGATTCCTAAG 1172
Query 1114 CAGGATATCAAACCTATTCGACACCGCGGCATCTTGATTGGAGAGGCTCGTTGGTTCGTT 1173
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1173 CAGGCTATCAAACCTATTCGACACCGCGGCATCTTGATTGGAGAGGCTCGTTGGTTTGTT 1232
Query 1174 CCTTGTTTCGGTGC 1187
|||||||| |||||
Sbjct 1233 CCTTGTTTTGGTGC 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50550987942
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5