BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10120.1
Length=2130
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919783 jgi|Araly1|919783|scaffold_101064.1 1921 0.0
Ahg910714 jgi|Araly1|910714|Al_scaffold_0001_968 638 0.0
> Ahg919783 jgi|Araly1|919783|scaffold_101064.1
Length=1156
Score = 1921 bits (1040), Expect = 0.0
Identities = 1122/1161 (97%), Gaps = 8/1161 (1%)
Strand=Plus/Plus
Query 823 TGTTGTTGAAGCAGAGGAATGGGTGGTGAGAGTAATGAAGGAGGAGAGATGGGCTTTAAG 882
|||||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||
Sbjct 3 TGTTGTCGAAGCAGAGGAATGGGTGGTGAGAGTAATG-A--AGGAGAGATGGGTTTTAAG 59
Query 883 CATGGAGATGATGAGAGTGGTGGGATCTCTAGAGTTGGAATTACATCAATGCCCTTGTAT 942
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 60 CATGGAGATGATGAGAGTGGTGGGATCTCAAGAGTTGGAATTACTTCAATGCCCTTGTAT 119
Query 943 GCAAAGGCAGATCCTTTCTTCTCTTCTGCAGATTGGGATCCAGTTGTCAATGCTGCTGCT 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCAAAGGCAGATCCTTTCTTCTCTTCTGCAGATTGGGATCCAGTTGTCAATGCTGCTG-- 177
Query 1003 GCTGGCTTCTCCAGCTCTCATTACCATCCTTCCATGGCGATGGATAATCCAGGGATGAGT 1062
| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 178 G-TGGCTTCTCAAGCTCTCATTACCATCCTTCAATGGCGATGGATAATCCAGGGATGAGT 236
Query 1063 TGCTTCTCTCATTACCAACCCGGTTCTGTTTCCGGTTTTGCAGCAGACATGCCTGCTAGT 1122
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 237 TGCTTCTCTCATTACCAACCCGGTTCTGGTTCCGGTTTTGCAGCAGACATGCCTGCTAGT 296
Query 1123 CTTCTTCCGTTTGGTGATTGTGGTGGTGGTCAAATTGGTCATTTTCTTGGTTCAGACAAG 1182
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 297 CTTCTTCCGTTTGGTGATTGTGGAGGTGGTCAAATTGGTCATTTTCTTGGTTCAGACAAG 356
Query 1183 AAAGGGGAAAGATTGATCAGAGCTGGAGAATCATCTCATGAGGATCATCATCAGGTTTCA 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AAAGGGGAAAGATTGATCAGAGCTGGAGAATCATCTCATGAGGATCATCATCAGGTTTCA 416
Query 1243 GATGATGCTGTTCTTGGTGCTTCCCCAGTTGGGAAAAGAAGGCTACCTGAAGCCGAATCA 1302
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 417 GATGATGCTGTTCTTGGTGCTTCCCCAATTGGGAAAAGAAGGCTACCTGAAGCCGAATCA 476
Query 1303 CAATGGAACAAGAAAGCTGTGGAGGAATTTCAAGAAGACCCTCAAAGGGGAAATGATCAG 1362
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 477 CAATGGAACAAGAAAGCTGTGGAGGAATTTCAAGAAGACCCTCAAAGGGGAAGTGATCAG 536
Query 1363 AGCCAGAAGAAGCATAAAAATGATCAGAGTAAAGAGACGGTGAACAAGGAGAGCTCACAA 1422
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGCCAGAAGAAACACAAGAATGATCAGAGTAAAGAGACGGTGAACAAGGAGAGCTCACAA 596
Query 1423 AGTGAAGAAGCACCGAAAGAAAACTACATTCATATGAGGGCAAGAAGAGGTCAAGCCACT 1482
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 597 AGTGAAGAAGCACCCAAAGAAAACTACATTCATATGAGGGCAAGAAGAGGTAAAGCCACT 656
Query 1483 AATAGTCACAGTCTTGCAGAGCGGGTTAGAAGAGAAAAGATCAGTGAAAGGATGAGATTG 1542
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 657 AATAGTCACAGTCTTGCAGAGAGGGTTAGAAGAGAAAAGATCAGTGAAAGGATGAGATTG 716
Query 1543 CTTCAAGAACTTGTTCCCGGATGCAACAAGATCACCGGAAAAGCGGTTATGCTCGATGAA 1602
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 717 CTTCAAGAACTTGTTCCTGGATGCAACAAGATCACCGGGAAAGCGGTTATGCTCGATGAA 776
Query 1603 ATAATCAACTATGTTCAGTCATTGCAACAGCAAGTTGAGTTTTTGTCTATGAAACTTGCG 1662
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ATCATCAACTATGTTCAGTCATTGCAACAGCAAGTTGAGTTTTTGTCTATGAAACTTGCG 836
Query 1663 ACGGTGAATCCAGAGATCAATATTGATATAGACAGGATTCTCGCCAAAGATCTTCTGCAG 1722
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 837 ACGGTGAATCCAGAAATCAACATTGATATAGACAGGATTCTTGCCAAAGATCTTCTGCAA 896
Query 1723 TCAAGAGACAGAAACACTCCTACACTCGGGCTGAATCCTTTT-GCCGGTTTTCAAGGGAA 1781
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 897 TCAAGAGACAGAAACACTCCTACACTCGGGCTGAATCCTTTTAGC-GGTTTTCAAGGGAC 955
Query 1782 CATACCAAACCTTTCTGCCACCACAAATCCACAATACAACCCACTACCTCAGACAACACT 1841
|||||| ||||||| | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 956 CATACCGAACCTTTGTACCACCACAAATCCACAATACAACCCATTACCTCAGACAACACT 1015
Query 1842 AGAGAGTGAACTACAAAACCTTTACCAGATGGGATTCGTCTCAAATCCATCGACTATGTC 1901
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1016 AGAGAGTGAACTACAAAACCTTTACCAGATGGGGTTCGTCTCAAATCCAACGACTATGTC 1075
Query 1902 CAGTTTCTCACCTAATGGTCGATTGAAACCTGAGCTCTAGTACTTCAAGGACACGGAAAA 1961
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1076 CAGTTTCTCACCTAATGGTCGATTGAAACCTGAGCTCTAGTACTTAAAGGACACGGAAAA 1135
Query 1962 TTTGCAGGGAGTTTGTATAGA 1982
|||||||||||||||||||||
Sbjct 1136 TTTGCAGGGAGTTTGTATAGA 1156
> Ahg910714 jgi|Araly1|910714|Al_scaffold_0001_968
Length=423
Score = 638 bits (345), Expect = 0.0
Identities = 381/399 (95%), Gaps = 0/399 (0%)
Strand=Plus/Plus
Query 1315 AAAGCTGTGGAGGAATTTCAAGAAGACCCTCAAAGGGGAAATGATCAGAGCCAGAAGAAG 1374
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1 AAAGCTGTGGAGGAATTTCAAGAAGACCCTCAAAGTGGAAGTGATCAGAGCCAGAAGAAG 60
Query 1375 CATAAAAATGATCAGAGTAAAGAGACGGTGAACAAGGAGAGCTCACAAAGTGAAGAAGCA 1434
|| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 61 CACAAAAATGATCAGAGTAAAGAGACGATGAACAAGGAGAGCTCACAAAATGAAGAAGAA 120
Query 1435 CCGAAAGAAAACTACATTCATATGAGGGCAAGAAGAGGTCAAGCCACTAATAGTCACAGT 1494
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CCAAAAGAAAAGTACATTCATATGAGGGCAAGAAGAGGTCAAGCCACTAACAGTCACAGT 180
Query 1495 CTTGCAGAGCGGGTTAGAAGAGAAAAGATCAGTGAAAGGATGAGATTGCTTCAAGAACTT 1554
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CTTGCAGAGAGGGTTAGGAGAGAAAAGATCAGTGAAAGGATGAGATTGCTTCAAGAGCTT 240
Query 1555 GTTCCCGGATGCAACAAGATCACCGGAAAAGCGGTTATGCTCGATGAAATAATCAACTAT 1614
||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 241 GTTCCCGGATGCAACAAGATCACCGGAAAAGCGTTTATGCTTGATGAAATCATCAACTAT 300
Query 1615 GTTCAGTCATTGCAACAGCAAGTTGAGTTTTTGTCTATGAAACTTGCGACGGTGAATCCA 1674
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTCAGTCATTGCAACAGCAAGTTGAGTTTTTGTCTATGAAACTTGCGACGGTGAATCCA 360
Query 1675 GAGATCAATATTGATATAGACAGGATTCTCGCCAAAGAT 1713
|| ||||| ||||||||||||||||||||||||||||||
Sbjct 361 GATATCAACATTGATATAGACAGGATTCTCGCCAAAGAT 399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80141875480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5