BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G10140.1

Length=747
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919785 jgi|Araly1|919785|scaffold_101066.1                        848    0.0  


> Ahg919785 jgi|Araly1|919785|scaffold_101066.1
Length=543

 Score =  848 bits (459),  Expect = 0.0
 Identities = 513/539 (95%), Gaps = 3/539 (1%)
 Strand=Plus/Plus

Query  55   aaaaaaaaacaaaaaCAGAGGATGAAACAAAACCAGAGCAAGTTCTTGAGAATAATCTCA  114
            |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct  1    AAAAAAAAACAAAAACAGAGCATGAAACAAAACCAGAACAAGTTCTTGAGAATAATCTCA  60

Query  115  ACACCTCTAAGAGCTTTAGGCAAGGCACGTGATTTCTACGTGAGAAGCATCACCGGTTGC  174
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   ACACCTCTAAGAGCTTTAGGCAAAGCACGTGATTTCTACGTGAGAAGCATCACCGGTTGC  120

Query  175  GCAGCTCGTACTCAATATtcctcctccgcctccgtctccgctccttttccaagaagccgg  234
            |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  121  GCAGCTCGGACTCAATATTCCTCCTCCGCCTCCGTCTCCGCTCCTTTTCCTAGAAGCCGG  180

Query  235  agctcctcctccgccgccttctcctcctccgcATCATCCCGGAGAACCACCGATTTCGGG  294
            |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct  181  AGCTCCTCCTCCGCCGCCTTCTCCTCCTCCGCTTCATCCCGGAGAGCCACCGATTTCGGG  240

Query  295  ATAGATGAAGATTACAGCGAGCTAGTGAGAGCTGCGTCGGTGAGGAGTTTAGGGCACAAG  354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ATAGATGAAGATTACAGCGAGCTAGTGAGAGCTGCGTCGGTGAGGAGTTTAGGGCACAAG  300

Query  355  AATGAGATAGACATGTTGATACAAGAGAAGCTGCAACAGCAGAAGCAACAGAAGCAAGGA  414
            |||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||
Sbjct  301  AATGAGATAGACATGTTGTTACAAGAGAAGCTGCAACAACAGAGGCAACAGAAGCAAGGA  360

Query  415  GGGTTGCCTAAGAGCTCGAGTGCTGGGATGGCGAGGATAGAGGAAGAGGAAGAAACAGAG  474
            ||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  361  GGGTTACCTAAGAGCTCGAGTGTTGGGATGGCGAAGATAGAGGAAGAGGAAGAAACAGAG  420

Query  475  GAAGGATCTGTGAATCCGAAGGTGAAGAAGACTAAGAAAGTCTCTGATCTTTTGTATCCT  534
            ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  421  GAAGGCTCTGTAAATCCGAAGATGAAGAAGACTAAGAAAGTCTCTGATCTTTTGTATCCT  480

Query  535  CGTAGCAAATCTTACGCCGTTACTACTAGTACCCCTATCTTGTAActtctcttcttctt  593
            ||||||||||| ||||| ||||||  |||  ||| ||  |||||| |||||||||||||
Sbjct  481  CGTAGCAAATCCTACGCTGTTACTGGTAG--CCC-TAAATTGTAATTTCTCTTCTTCTT  536



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27524746074


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5