BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10150.1
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471130 jgi|Araly1|471130|fgenesh2_kg.1__1084__AT1G10150.1 2320 0.0
Ahg475362 jgi|Araly1|475362|fgenesh2_kg.2__492__AT1G59510.1 368 7e-101
> Ahg471130 jgi|Araly1|471130|fgenesh2_kg.1__1084__AT1G10150.1
Length=1711
Score = 2320 bits (1256), Expect = 0.0
Identities = 1616/1775 (91%), Gaps = 84/1775 (5%)
Strand=Plus/Plus
Query 37 TCTCTCTCTTCCAGCCTTTCTTGAA----T-CTCTCACCTCTCACGCCAATTTCATTTTC 91
|||||||||||||| |||||||||| | |||||||||| ||||||||||||||||||
Sbjct 1 TCTCTCTCTTCCAGACTTTCTTGAATCTCTCCTCTCACCTCACACGCCAATTTCATTTTC 60
Query 92 ATGCATCGCTATTTCCCCTTAtcttcttcttcttcttcttATCTCCCAACTAAATTATCT 151
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 61 ATGCATCGCTATTTCCCCTTA------TCTTCTTCTTCTTATCTCCTAACTAAATTATCT 114
Query 152 GTCTCCATTCATGTTATTATGGTC-AACAACAGAATCTGAATCC-CATTTCCCCATTTTC 209
||||||||||||||||| | | ||||||||||||||||||| | ||||||||||| |
Sbjct 115 GTCTCCATTCATGTTATGGTCAACAAACAACAGAATCTGAATCCTC-TTTCCCCATTTCC 173
Query 210 GGATCACAATAACTAACAAACCCTAGATTTCTATCTATAGTCCTTCGATCTGTTTCTGTG 269
||||||| || |||||||||||||||||||||| || | | |
Sbjct 174 GGATCAC---AA-TAACAAACCCTAGATTTCTATC--TA-----T--A-----------G 209
Query 270 TCTCCTTAAAGCTGTGATTTTTGCAATTGGGGTTTGTGAGATTCGATCAATTAATTGTGT 329
|||||||||||||||||||||||||||| ||| | |||||||||| ||||||| ||
Sbjct 210 --TCCTTAAAGCTGTGATTTTTGCAATTGGATTTTTTCAGATTCGATCGATTAATTCTG- 266
Query 330 TTGTTGAATGGACCTTCTTCGATTGAGAGAAAAGGGTATATTTTTATCTCAGAGAAGAAG 389
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 267 TTGTTGAATGGACCTTCTTCGATTGAGCGAAAAGGGTATCTTTTTATCTCAGAGAAGAAG 326
Query 390 GAAATGGCTGATTTTTATGGCGATCTCTGGAGTTTCTGGCTATGGAGCTTACAAGGTTTA 449
|||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 327 GAAATGGCTGATTTTTATGGCGATTTCTGGTGTTTCTGGCTTTGGAGCTTACAAGGTTTA 386
Query 450 TCATTTGCCATCTGTTGCCAGAAAAAGGAAGCGTCTTTTTAAGCTTTTCGGAGCCATTGT 509
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 387 TCATTTACCATCTGTCGCGAGAAAAAGGAAGCGTCTTTTTAAGCTTTTCGGAGCCATTGT 446
Query 510 CTCTGTAGCTGAATTGATCTCTGATTCAGCTGAGACCTTAAGTATGGTATCACGAGACGT 569
|||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||| |
Sbjct 447 CTCTGTTGCTGAATTGATCTCTGATTCAGCCGAGACCTTAAGTATCGTGTCACGAGACTT 506
Query 570 GAAGGATTTTCTCAATTCAGATTCAGATGAAATCCCTAACAGCTTGAAGCAGATCGCGAA 629
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 507 GAAGGGCTTTCTCAATTCAGATTCAGATGAAATCCCTAATAGCTTGAAGCAGATCGCGAA 566
Query 630 GATCACAACTTCGAATGAGTTTACGGATTCGCTTTCTAGGGTTTCTCAGGCTGTGACTAT 689
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 567 GATCACAACGTCGAATGAGTTTACGGATTCGCTTTCTAGGGTTTCTCAGGCTGTGACGAT 626
Query 690 TGGTGCCTTTCGTGGGTACAAATCCGAATCGTC---T----A--TTGGTGATTCAGGAAT 740
||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 627 TGGTGCCTTTCGTGGGTACAAATCCGAATCGTCTAGTAACAACGTTGGTGATTCAGGAAT 686
Query 741 TGAGAAATCATCAGACTCGAGTGTTGTTGATAGAGTGATTGATAAGGTTTTCTCAGAGGC 800
|||| || | | | || | | | | | || || ||||||||||||||||||||||
Sbjct 687 TGAG-AA-GA--A-A-TC--G-GAT-TCG--AGTGTTCTTGATAAGGTTTTCTCAGAGGC 734
Query 801 TGGAACTGGTTTTGTTTCAGTTGTTGTTGGTAGCTTTGCTAAGAATCTTGTTCTTGGATT 860
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 735 TGGGACTGGGTTTGTTTCTGTTGTTGTTGGTAGCTTTGCTAAGAATCTTGTTCTTGGGTT 794
Query 861 TTACTCTGGTAAGGTAGAGAGTGGTGTGAAATGTGAGGGTTCTGATTCTTCTGAGACACC 920
||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 795 TTACTCTGGTAAGCTCGAGAGTGGTGTGAAATGTGAGGGTTCTGATTCTTCAGAGACACC 854
Query 921 TAGATGGGTGACTTTGCTTGGTGATGACAAGTGTAGAGAGCTTTTAGCTGATTGTATTGA 980
|| |||||||| ||||||| ||||||| |||||||||||||||||||||| |||||||||
Sbjct 855 TAAATGGGTGAATTTGCTTTGTGATGATAAGTGTAGAGAGCTTTTAGCTGTTTGTATTGA 914
Query 981 GAGATTCACCAGCACTGCAATTGGTGTGTATCTTGACAAGACGATGGATATCAATACTTA 1040
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GAGATTCACCAGCACTGCGATTGGTGTGTATCTTGACAAGACGATGGATATCAATACTTA 974
Query 1041 TGATCAAATCTTTGAAGGCTTGACGAATCCGAAACATCAGGATAGTGTCAAGGACGTTCT 1100
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 975 TGATCAAATCTTTGAAGGCTTGACGAATCCGAAACATCAGGATAGTGTCAAAGACGTTCT 1034
Query 1101 TGTTTCGGTTTGTAACGGTGCTCT-CGAGACTATTGTTAGGACATCTCACGACGTGTTTA 1159
||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 1035 TGTTTCGGTTTGTAATGGTGCTCTTC-AGACTATTGTTAGGACATCTCACGAAGTGTTTA 1093
Query 1160 CATCTTCAAGGTCTAAGAATGTGATAGAAGAGATCGAAGATGATGATTTCAAGAGTAATG 1219
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1094 CATCTTCAAGGTCTAAGAATGTGATAGAAGAGATTGAAGATGACGATTTCAAGAGTAATG 1153
Query 1220 GTTCCGCGAGAAGCAAGATGGTTTCGGAATCAGGAGATGGGGTCAAGAGTAATGGGTGGA 1279
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1154 GTTCCGCGAGAAGCAAGATGGTTTCGGAATCAGGAGATGGGATCAAGAGTAATGGGTGGA 1213
Query 1280 CTGAGGCTATTGCAACTACATTGGCAGTTCCGAGCAATCGGAGGTTTATGTTTGATGTAA 1339
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1214 CTGAGGCTATCACAACTACATTGGCAGTTCCGAGCAATCGGAGGTTTATGTTCGATGTAA 1273
Query 1340 CAGGAAGAGTAACACTAGAAACGACGAGATCAATCATCGCATTTATAATGGTGAAGACAT 1399
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1274 CAGGAAGAGTAACACTAGAAACGACAAGATCAATCATCGCATTTATAATGTTGAAGACAT 1333
Query 1400 TTCAAGGGTTCAGAAAAAGTATCAATGTGGTTCATGAAGAGGTTACAGACAGAGGACGCC 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 TTCAAGGGTTCAGAAAAAGTATCAATGTGGTTCATGAAGAGGTTACAGACAGAGGACGCC 1393
Query 1460 AAGCAGTTGAATATGTTGGAGCCAAATCTTCTGTTATAATCACTGTATGCCTTGCGTTGT 1519
|||||||||| || |||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 1394 AAGCAGTTGATTACGTTGGAGCCAAATCTTCTGTTATAATCACTGTGTGCCTCGCATTGT 1453
Query 1520 ACTTGCACATCATAAGCGGCTGTGTTCGGAATTCTCCCATAGGCGTAAGCCAGCATTTTT 1579
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1454 ACTTGCATATCATAAGCGGCTGTGTTCGGAATTCTCCTATAGGCGTAAGCCAGCATTTTT 1513
Query 1580 AGTTCTTCAGATGAAGAA-GAGATCATCGATTTGGTT-GGATATAGGATAATATTTGTTA 1637
|||||||||||||||||| | |||| ||||||||| |||||||||||| |||||||||
Sbjct 1514 AGTTCTTCAGATGAAGAACG-GATC---GATTTGGTTTGGATATAGGATATTATTTGTTA 1569
Query 1638 GGTACACAAGATTTATCAGCTCGTTGTTTATAGTTGGAGCTGAGAATATTGTAAAGATTG 1697
|||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| ||
Sbjct 1570 GGTACACAAGATTTATCAGCTCTTTGTTTATAGT-GGAGCTGAGGATATTGTAAAGACTG 1628
Query 1698 TGTGCGTGTATTAGCACAACTTGATTCTTATTGATGGATCATGGATCTtatatatatata 1757
|||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1629 TGTGCGTGTATTAGCACAACTTGATTCTTATTGATGGATCAT--AT---ATATA------ 1677
Query 1758 CATATTGAAAAGGTTCTTGGGG-CATTGATCTTTG 1791
||||||||||||||||| |||| ||||||| ||||
Sbjct 1678 CATATTGAAAAGGTTCT-GGGGACATTGATGTTTG 1711
> Ahg475362 jgi|Araly1|475362|fgenesh2_kg.2__492__AT1G59510.1
Length=1397
Score = 368 bits (199), Expect = 7e-101
Identities = 651/855 (76%), Gaps = 87/855 (10%)
Strand=Plus/Plus
Query 337 ATGGACCTTCTTCGATTGAGAGA-AAAGGGTAT-ATTTTTATCTCAGAGAAGAAGGAAAT 394
||||||||| ||||||||||||| | | ||| | | ||| | ||||||||||||||||||
Sbjct 139 ATGGACCTTGTTCGATTGAGAGACATA-GGT-TCAATTTCACCTCAGAGAAGAAGGAAAT 196
Query 395 GGCTGATTTTTA-TGGC-GATCTCTGGAGTTTCTGGCTATGGAGCTTACAAGGTTTATC- 451
|||||| || || | || | | || || ||||| || ||||||| ||||| |||||| |
Sbjct 197 GGCTGA-TTCTATTAGCGGTTTTC-GGTGTTTCGGGTTATGGAGTTTACAGGGTTTA-CA 253
Query 452 ATT-TGCCAT-CTGTTGCCAGAAAAAGGAAGCGTCTTTTTAAGCTTTTCGGAGCCATTGT 509
||| || || | | | || || | |||||||||| | ||||| ||||||| |||||
Sbjct 254 ATTCTG-AATAC-ATCACTAGGAAGACGAAGCGTCTTATGAAGCTATTCGGAGGTATTGT 311
Query 510 CTC-TGTAGCTGAATTGAT-CTCTGATTCAGCTGAGACCTTAAGTATGGTATCACGAGAC 567
|| | | || |||||| | || ||||| || ||||| |||| || || || || ||
Sbjct 312 TTCAT-TCGCCGAATTGGTAATC-GATTCGGCGGAGACGATAAGCATCGTTTCTCGGGAT 369
Query 568 GTGAAGGATTTTCTCAATTCAGATTCAGATGAAATCCCTAACAGCTTGAAGCAGATCGCG 627
|||| || ||||| |||| ||||| ||||| |||||||| |||||||| ||| |||||
Sbjct 370 TTGAAAGAGTTTCTGGATTCGGATTCTGATGAGATCCCTAATAGCTTGAAACAGCTCGCG 429
Query 628 AAGATCAC-AACTTCGAATGAGTTTACGGATTCGCTTT--CTAGGGTTTCTCAGGCTGTG 684
||||| || || ||||| ||||| || |||| |||| ||||||||||| | || |||
Sbjct 430 AAGATTACTAA-ATCGAAAGAGTTCACTGATT--CTTTAGCTAGGGTTTCTGAAGCCGTG 486
Query 685 ACTATTGGTGCCTTT-CGTGGGTACAAATCCGAATCGTCTATTGGTGATTCAGGAATTG- 742
| ||||| | ||| || ||||| || | || | || | || | || | || |
Sbjct 487 GCGATTGG-GGTTTTCCGCGGGTATAATTTCG-A---TC-A--GGAG-TTGA-AAAACGT 536
Query 743 AGAAATCATCAGACTCGAGTGTTGTTGATAGAGTGA-TTGATAAG-GTTTTCTCAGAGGC 800
|||| | ||| |||| | ||| || || | ||||| || |||||||||||||
Sbjct 537 CGAAA--A--AGAATCGA---AT-TTG--AGTGT-AGTTGAT-AGAGTTTTCTCAGAGGA 584
Query 801 TGGAACTGGTTTTGTTTCAGTTGTTGTTGGTAGCTTTGCTAAGAATCTTGTTCTTGGATT 860
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 585 AGGAGCTGGTTTTGTTTCTGTTGTTGTTGGTAGCTTTGCTAAGAATCTTGTTCTTGGATT 644
Query 861 TTACTCTGGTAAGGTAGAGAGTGGTGTGAAATGTGAGGGTTCTGATTCTTCTGAGACACC 920
|||||| | ||| |||| | ||| || ||| ||||||||| | | |||
Sbjct 645 TTACTC---T--GGT-GAGA----T-TGAGAT-TGA------TGATTCTTC--A-AAACC 683
Query 921 TAGATGGGTGACTTTGCTTGGTGATGACAAGTGTAGAGAGCTTTTAGCTGATTGTATTGA 980
||||||| ||| |||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 684 TAGATGGATGAATTTGTTTAGTGATGGTAAGTGTAGAGAGCTTTTAGCTGATTGTATTGA 743
Query 981 GAGATTCACCAGCACTGCAAT-T-GGTGTGTATCTTGACAAGAC-GATGGA-TATCAATA 1036
|||||| || ||| | || | | ||||| |||| || || || | ||| | | ||||
Sbjct 744 GAGATTTACTAGCTCAGCGGTATCGGTGTATATCGAGA-AA-ACCGTTGGGGT-T-AATA 799
Query 1037 CTTATGATCAAATCTT-TGAAGGCTTGACGAATCCGAAACATC-AGGATAGTGTCAAG-G 1093
|||||||||| || || | || ||||||||||||||||||| || |||||| | || |
Sbjct 800 CTTATGATCAGATATTCTCT-GGTTTGACGAATCCGAAACATCGAG-ATAGTG-CTAGAG 856
Query 1094 ACGTTCTTGTTTCGGTTTGTAACGGTGCTCTCGAGACTATTGTT-AGGACATCTCACGAC 1152
| |||||||||||||||||||| || ||||| |||||| || | || || ||||||||
Sbjct 857 ATGTTCTTGTTTCGGTTTGTAATGGAGCTCTTGAGACT-TTCATGAGAACTTCTCACGAT 915
Query 1153 GTGTTTACATCTTCA 1167
|| ||||||||||||
Sbjct 916 GTCTTTACATCTTCA 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67229282425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5