BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10170.1
Length=3897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471132 jgi|Araly1|471132|fgenesh2_kg.1__1086__AT1G10170.1 5441 0.0
Ahg336533 jgi|Araly1|336533|fgenesh1_pg.C_scaffold_1003098 2073 0.0
> Ahg471132 jgi|Araly1|471132|fgenesh2_kg.1__1086__AT1G10170.1
Length=3644
Score = 5441 bits (2946), Expect = 0.0
Identities = 3271/3429 (95%), Gaps = 18/3429 (1%)
Strand=Plus/Plus
Query 361 CCTGATAACCAGCATCAAAGGAGTGAT---AACAGTGGTCCACCTCAACCTTATCGACAT 417
||| ||||||| || ||||||||| || |||| ||||||||||| |||| ||||||||
Sbjct 194 CCT-ATAACCACCACCAAAGGAGTAATAACAACATTGGTCCACCTCCACCTAATCGACAT 252
Query 418 AGAAGAAATAATGCTCCTGAGAACCAGCACCAAAGGAGTGATAAC-A--TTGGTCCACCT 474
|||||||||||||| ||||| ||||| |||||||||| ||||||| | |||||||||||
Sbjct 253 AGAAGAAATAATGCGCCTGATAACCACCACCAAAGGATTGATAACAACCTTGGTCCACCT 312
Query 475 CCACCTAATCGACAAAGAAGGAATAATGCTTCTGGAACTCTGCCAGATAATCGCCAAAGA 534
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 313 CCACCTAATCGTCAAAGAAGGAATAATGCTTCTGGAACTCTGCCTGATAATCGCCAAAGA 372
Query 535 GTTGCATCTAGGACGCGGCCTGTGAATCAGGGGAAAAGGGTAGCGAAGGAGGAGAATGTT 594
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 373 GTTGCATCTAGGACACGGCCTGTGAATCAGGGGAAAAGGGTAGCTAAGGAGGAGAATATT 432
Query 595 GTGTTGACAGACCCAAACTTGCCTCAACTTGTTCAAGAGTTACAGGAGAAGCTTGTCAAG 654
|||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 433 GTGTCGACAGACCCAAACTTGCCTCAACTTGTTCAAGAGTTACAGGAGAAGCTGGTGAAG 492
Query 655 AGTTCTATTGAGTGTATGATTTGTTATGACAAGGTTGGGAGGTCTGCCAATATCTGGTCA 714
|| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 493 AGCTCTATTGAGTGTATGATTTGTTATGACAAGGTTGGTCGCTCTGCCAATATCTGGTCA 552
Query 715 TGCTCCAGCTGTTATTCCATCTTCCATATCAACTGTATCAAGAGGTGGGCTCGAGCACCA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 TGCTCCAGCTGTTATTCCATCTTCCATATCAACTGTATCAAGAGGTGGGCTCGAGCACCA 612
Query 775 ACTTCAGTTGATTTGCTAGCTGAGAAAAACCAAGGTGATAACTGGAGATGTCCAGGTTGC 834
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 613 ACTTCAATTGATTTGCTAGCTGAGAAAAATCAAGGTGATAACTGGAGATGTCCAGGTTGC 672
Query 835 CAATCTGTACAGTTGACATCATCTAAAGAGATTTCCTATCGGTGCTTTTGTGGAAAGAGA 894
|||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct 673 CAATCTGTACAGTTGACATCTTCTAAAGAGATTTGCTATCAGTGCTTTTGTGGAAAGAGA 732
Query 895 AGAGATCCACCGTCTGACCCATATCTCACTCCACACTCATGCGGGGAACCATGTGGGAAA 954
||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||
Sbjct 733 AGAGATCCACCGTCTGATCCTTATCTCACTCCACACTCATGTGGGGAACCATGCGGGAAA 792
Query 955 CCGCTGGAGAAAGAGTTTGCACCTGCTGAGACGACTGAAGAGGATCTTTGTCCTCATGTA 1014
||||||||||||||| ||||| | |||| ||||||| ||||||||||||||||||||| |
Sbjct 793 CCGCTGGAGAAAGAGCTTGCAGCAGCTGGGACGACTAAAGAGGATCTTTGTCCTCATGCA 852
Query 1015 TGTGTTTTGCAGTGTCATCCTGGTCCATGTCCTCCCTGTAAAGCCTTTGCTCCACCTCGT 1074
||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 853 TGTGTGTTGCAGTGTCATCCTGGTCCATGTCCTCCCTGTAAGGCGTTTGCTCCACCTCGT 912
Query 1075 AGCTGTCCTTGTGGGAAAAAGATGGTTACTACTAGATGCTCCGAGCGGAGATCTGATCTT 1134
|||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 913 AGCTGTCCTTGTGGTAAGAAGATGTTTACTACTAGATGCTCCGAGCGGAGATCTGATCTT 972
Query 1135 GTTTGTGGGCAGCGTTGCGATAAGCTTCTTAGTTGCGGGCGTCATCAATGTGAAAGGACA 1194
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 973 ATTTGTGGGCAGCGTTGCGATAAGCTTCTCAATTGCGGGCGTCATCAATGTGAAAGGACA 1032
Query 1195 TGTCATGTTGGCCCTTGTGATCCTTGTCAGGTACTGGTAAATGCCACATGTTTCTGCAAG 1254
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1033 TGTCATGTTGGCCCTTGTGATCCTTGTCAGGTACTGGTTAATGCCACATGTTTCTGCAAG 1092
Query 1255 AAAAAAGTGGAGACTGTCATTTGCGGTGATATGAATGTGAAGGGGGAATTGAAAGCAGAA 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 AAAAAAGTGGAGACTGTCATTTGCGGTGATATGAATGTGAAGGGGGAATTGAAAGCAGAA 1152
Query 1315 GATGGTGTCTATTCATGCAGTTTTAACTGTGGGAAGCCTCTTGGATGTGGTAATCATTTC 1374
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 GATGGTGTGTATTCGTGCAGTTTTAACTGTGGGAAGCCTCTTGGATGTGGTAATCATTTC 1212
Query 1375 TGTTCCGAGGTATGCCATCCTGGACCTTGCGGGGACTGTGACTTACTGCCCAGTAGAGTT 1434
||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 1213 TGTTCCGAGGTCTGCCATCCAGGACCTTGCGGAGACTGCGACTTACTGCCCAGTAGAGTT 1272
Query 1435 AAGACATGCTATTGTGGGAATACGCGTTTAGAAGAACAGATCAGGCAGAGTTGCTTGGAC 1494
|||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||
Sbjct 1273 AAGACATGCTATTGTGGGAAAACACGTTTAGAAGAACAGATCAGGCGGAGTTGCTTGGAC 1332
Query 1495 CCAATTCCTTCTTGTTCAAATGTATGTAGGAAGCTTCTTCCTTGTAGGTTACATACTTGC 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CCAATTCCTTCTTGTTCAAATGTATGTAGGAAGCTTCTTCCTTGTAGGTTACATACTTGC 1392
Query 1555 AATGAGATGTGCCATGCAGGTGATTGCCCGCCTTGTTTAGTCCAAGTTAACCAGAAATGC 1614
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1393 AATGAGATGTGCCATGCAGGTGATTGCCCGCCTTGTTTGGTCCAAGTTAACCAGAAATGC 1452
Query 1615 CGGTGTGGGTCAACATCCAGGGCTGTGGAATGCTACATAACAACTTCCTCAGAGGCAGAG 1674
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1453 CGGTGTGGGTCAACATCCAGGGCTGTGGAATGCTACATAACAACTTCATCAGAGACAGAG 1512
Query 1675 AAGTTTGTGTGCGCTAAGCCATGTGGACGTAAGAAGAACTGTGGGAGACATAGATGTAGC 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 AAGTTTGTGTGCGCTAAGCCATGTGGACGTAAGAAGAACTGTGGGAGACATAGATGTAGC 1572
Query 1735 GAGCGTTGCTGCCCTCTCTTGAACGGGAAGAAGAATGATTTATCTGGCGATTGGGACCCA 1794
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1573 GAGCGTTGCTGCCCTCTCTTGAACGGGAAGAAAAATGATCTATCTGGCGATTGGGACCCA 1632
Query 1795 CATGTCTGCCAAATACCTTGTCAGAAGAAGCTAAGGTGTGGGCAGCATTCCTGTGAATCT 1854
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1633 CACGTCTGCCAAATACCTTGTCAGAAGAAGCTGAGGTGCGGGCAGCATTCCTGTGAATCT 1692
Query 1855 TTATGTCACAGTGGACATTGCCCTCCTTGTCTCGAGATGATCTTCACTGATCTTACATGT 1914
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1693 TTATGTCACAGTGGACATTGCCCTCCTTGTCTAGAGATGATCTTCACTGATCTTACATGT 1752
Query 1915 GCTTGTGGAAGAACTTCGATTCCTCCTCCACTATCATGTGGGACACCTGTTCCTAGCTGT 1974
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1753 GCTTGTGGAAGAACTTCGATTCCTCCACCACTACCATGTGGGACACCTGTTCCTAGCTGT 1812
Query 1975 CAGCTTCCATGC-CCGATTCCTCAGCCTTGTGGCCATTCTGATACGCATGGATGCCATTT 2033
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 CAGCTTCCATGCTCC-ATTCCTCAGCCTTGTGGCCATTCTGATACGCATGGATGCCATTT 1871
Query 2034 TGGAGATTGTCCTCCTTGTTCTACCCCTGTGGAAAAGAAGTGCGTTGGTGGTCATGTGGT 2093
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1872 TGGAGATTGTCCTCCTTGTTCTGCCCCTGTGGAAAAGAAGTGCGTTGGTGGTCATGTGGT 1931
Query 2094 TCTCAGAAACATACCCTGTGGGTTGAAAGACATTAGATGTACCAAGATTTGTGGAAAGAC 2153
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1932 TCTCAGAAACATACCTTGTGGGTTGAAAGACATTAGATGTAACAAGATTTGTGGAAAGAC 1991
Query 2154 GAGGCGTTGTGGCATGCATGCTTGTGCCAGAACTTGTCACCCGGAGCCTTGTGACAGCTT 2213
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1992 GAGACGTTGTGGCATGCATGCTTGTGCCAGAACTTGTCACCCTGAGCCTTGTGACAGCTT 2051
Query 2214 CAATGAATCTGAAGCAGGTATGCGTGTTACGTGTAGACAGAAATGTGGTGCTCCTAGAAC 2273
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2052 CAATGAATCTGAAGCAGGTATGCGTGTTACGTGTAGACAGAAGTGTGGTGCTCCTAGAAG 2111
Query 2274 AGATTGCAGACACACTTGTGCAGCACTCTGCCATCCTTCTGCGCCTTGCCCTGACCTAAG 2333
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2112 AGATTGCAGACACACTTGTGCAGCGCTCTGCCATCCTTCCGCGCCTTGCCCTGACCTAAG 2171
Query 2334 ATGTGAATTTTCAGTCACAATTACTTGTTCATGTGGTCGTATAACCGCTACGGTCCCTTG 2393
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2172 CTGTGAATTTTCAGTCACAATTACTTGTTCATGTGGTCGCATAACCGCTACGGTTCCTTG 2231
Query 2394 TGATGCTGGGGGAAGAAGTGCCAACGGTTCTAATGTTTACTGTGCGGCCTATGATGAAGC 2453
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2232 TGATGCTGGAGGAAGAAGTGCCAACGGTTCTAATGTTTACTCTGCGGCCTATGATGAAGC 2291
Query 2454 CTCTGTTTTACAGAAGCTTCCAGCTCCACTTCAGCCTGTTGAATCGAGCGGAAACCGTAT 2513
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 2292 CTCTGTTTTACAGAAGCTTCCAGCCCCACTTCAGCCTGTTGAGTCGAGCGGAAACCGAAT 2351
Query 2514 CCCCCTCGGGCAGAGAAAGCTTTCGTGTGATGATGAGTGTGCGAAGCTGGAGCGTAAGCG 2573
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2352 CCCTCTCGGACAGAGAAAGCTTTCGTGTGATGATGAGTGTGCGAAGCTGGAGCGTAAGCG 2411
Query 2574 GGTTCTTCAAGATGCATTTGATATAACTCCCCCAAATCTGGAGGCATTACATTTCAGCGA 2633
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2412 GGTTCTTCAAGATGCATTTGATATCACTCCCCCAAATCTGGAGGCATTACATTTCAGCGA 2471
Query 2634 GAATTCTGCTATGACAGAGATTATTTCAGACCTTTATAGGCGTGATCCAAAGTGGGTACT 2693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2472 GAATTCTGCTATGACAGAGATTATTTCAGACCTTTATAGGCGTGATCCAAAGTGGGTACT 2531
Query 2694 GGCTGTTGAAGAGCGCTGCAAGTTCTTGGTACTTGGGAAAGCAAGAGGAAGCACAAGTGC 2753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2532 GGCTGTTGAAGAGCGCTGCAAGTTCTTGGTACTTGGGAAAGCAAGAGGAAGCACAAGTGC 2591
Query 2754 CCTTAAGGTCCATATCTTCTGCCCGATGCAGAAGGATAAACGAGACACGGTTCGACTTAT 2813
||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 2592 CCTTAAGGTCCATGTCTTCTGCCCTATGCAGAAGGATAAACGAGACACGGTTCGGCTTAT 2651
Query 2814 AGCTGAGAGGTGGAAACTTGGTGTTAGCAACGCAGGGTGGGAGCCAAAACGGTTTACAGT 2873
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2652 AGCTGAGAGGTGGAAACTTGGTGTTAGCAATGCAGGGTGGGAGCCAAAACGGTTTACAGT 2711
Query 2874 GGTTCACGTAACAGCAAAATCGAAACCGCCAACAAGGATCATTGGAGCTAGGGGTGGTGC 2933
||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2712 GGTTCACGTAACACCGAAATCGAAACCGCCAACACGGATCATTGGAGCTAGGGGTGGTGC 2771
Query 2934 TATCTCGATAGGAGGGCCACACCCACCGTTCTATGATTCGCTGGTGGATATGGATCCTGG 2993
||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| ||
Sbjct 2772 TATCTCGATAGGAGGGCCACACCCACCATTCTTTGATCCGCTGGTGGATATGGATCCGGG 2831
Query 2994 ACTTGTGGTTTCTTTTCTGGATCTTCCGAGAGAGGCGAATATCAGCGCCTTGGTACTGAG 3053
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2832 ACTTGTGGTTTCTTTACTGGATCTTCCGAGAGAGGCGAATATCAGCGCCTTGGTACTGAG 2891
Query 3054 ATTTGGGGGTGAATGTGAGCTTGTTTGGCTGAATGACAAGAATGCTTTAGCGGTGTTCCA 3113
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2892 ATTTGGGGGTGAATGTGAGCTTGTTTGGCTGAATGACAAGAATGCTTTAGCCGTGTTCCA 2951
Query 3114 CGACCATGCCCGAGCTGCCACTGCCATGAGGAGGCTTGAGCACGGTTCAGTATATCATGG 3173
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2952 CGACCATGCCCGAGCTGCCACTGCCATGAGGAGGCTTGAGCACGGTTCAGTATACCATGG 3011
Query 3174 AGCTGTGGTTGTCCAGAGCGGCGGGCAATCTCCATCACTTAATAATGTATGGGGAAAATT 3233
|||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 3012 AGCTGTGGTTGTGCAGAACGACGGGCAATCTCCATCACTTAATAATGCATGGGGAAAATT 3071
Query 3234 ACCTGGCAGCTCGGCGTGGGATGTTGACAAAGGAAATCCATGGAGGAGAGCTGTGATTCA 3293
||||||| | ||||| ||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 3072 ACCTGGCGGATCGGCATGGGATGTTCACAAAGGAAATCCATGGAGGAAAGCTGTGATTCA 3131
Query 3294 GGAGAGTGATGACTCCTGGGGAGCTGAAGATTCCCCCATTGGAGGATCATCTACAGATGC 3353
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3132 GGAGAGTGATGACTCCTGGGGAGCTGAAGATTCGCCCATTGGAGGATCATCTACAGATGT 3191
Query 3354 TCAAGCCTCTGCGCTGAGATCAGCAAAGAGCAACT-CTCCAATTGTTACCTCGGTTAACC 3412
|||||||||||| | |||||||||||||||||| | ||||||| ||||||||||||||||
Sbjct 3192 TCAAGCCTCTGCACAGAGATCAGCAAAGAGCAA-TACTCCAATCGTTACCTCGGTTAACC 3250
Query 3413 GTTGGAGTGTTTTAGAGCCCAAGAAGGCCAGCACATCCACTTTGGAGCCAATTGCTCAGA 3472
||||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||||
Sbjct 3251 GTTGGAGTGTTTTGGAGCCCGAGAAGGCCAGCACATCCACTTTAGAGCCACTTGCTCAGA 3310
Query 3473 TAGAAGAGAGCAGTAGTTCAAAAACTACCGGTAAACAACCGGTGGAAGGCTCCGGTGAAG 3532
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3311 TAGAAGAGAGCAGCAGTTCAAAAACTACCGGTAAACAACCGGTGGAAGGCTCTGGTGAAG 3370
Query 3533 AAGTGGTGGATGACTGGGAGAAGGTATGTGAGTGAGAGCATATACCCAACGACTGTGATT 3592
|||||||||||||||||||||||||||||||||||||||| || || ||| |||||||||
Sbjct 3371 AAGTGGTGGATGACTGGGAGAAGGTATGTGAGTGAGAGCAGATGCCAAACAACTGTGATT 3430
Query 3593 GGTTTTCAACTTCTTTGTGATGTATGAAAACGGCAGATTGTTCAGACGTATATAATGGAG 3652
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct 3431 GGTTTTCAACTTCTTTGTGATGTATGAAAAAGGCAGATTGTTGAGACGTATATAACGGAG 3490
Query 3653 ACTGTATGCGTG-TGCGT-----A-TGCTGTGATGAGTCCATTTCAAAGCTTAGGTGATA 3705
| ||||||||| ||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 3491 AATGTATGCGTCATGCGTGTGCGAATGCTGTGATGAGTCCATTTCAGAGCTTAGGTGATA 3550
Query 3706 GCCAACGACGTGCCGTTTTTGTTTTGGCATCTTTGGCGTGCGTTTGGTTTATTTATGTAG 3765
|||||||| ||||||||||||||||||||||| || ||| | || |||||||||| ||
Sbjct 3551 GCCAACGAAGTGCCGTTTTTGTTTTGGCATCTATGACGTTTGCTTCGTTTATTTATATAT 3610
Query 3766 TAACTaaaa 3774
|||||||||
Sbjct 3611 TAACTAAAA 3619
Score = 375 bits (203), Expect = 1e-102
Identities = 317/366 (87%), Gaps = 32/366 (9%)
Strand=Plus/Plus
Query 1 ATGAGCTTTCAAGTCAGGCGAGATAGGAGCGATGATAGGTCTCATCGATTCAATCATCAG 60
|||||||||||||||||| ||||||||| |||||||||| || ||||||||| | ||||
Sbjct 1 ATGAGCTTTCAAGTCAGGAGAGATAGGACCGATGATAGG--TC-TCGATTCAACCCTCAG 57
Query 61 CAAACGTGGATTCCTAGAAACTCATCTACCTCGAGCGTGGTGGTAAATGAGCCTTTGCTT 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 58 CAAACGTGGATTCCTAGAAACGCATCTACCTCGAGCGTGGTGGTAAATGAGCCTTTGCTT 117
Query 121 CCTCCTAATACAGATAGAAATTCTGAAACCCTTGATGCTGGTTCTGCATCCCGTCCTGTT 180
||||| | | || |||| | |||||| | | |||||||||||||| ||
Sbjct 118 CCTCC---T--A-AT-GAAA----G----CCTTGA---T-G--CTGCATCCCGTCCTCTT 156
Query 181 TATCTGCAAAGGCAGCATAACGCTTCTGGTCCTCCGTCCTATAACCACCACCAAAGGAGT 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 157 TATCTGCAAAGGCAGCATAACGCTTCTGGTCCTCCGCCCTATAACCACCACCAAAGGAGT 216
Query 241 AGTAACA---TTGGTCCACCTCCACCTAATCAACATAGAAGATATAATGCGCCTGATAAC 297
| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 217 AATAACAACATTGGTCCACCTCCACCTAATCGACATAGAAGAAATAATGCGCCTGATAAC 276
Query 298 CAGCATCAAAGGAGTGATAACA---TTGGTCCACCTCAACCTAATCAACATAGAAG-ATA 353
|| || ||||||| |||||||| |||||||||||| |||||||| || ||||| | |
Sbjct 277 CACCACCAAAGGATTGATAACAACCTTGGTCCACCTCCACCTAATCGTCAAAGAAGGA-A 335
Query 354 TAATGC 359
||||||
Sbjct 336 TAATGC 341
Score = 84.2 bits (45), Expect = 7e-15
Identities = 61/68 (90%), Gaps = 3/68 (4%)
Strand=Plus/Plus
Query 439 AACCAGCACCAAAGGAGTGAT---AACATTGGTCCACCTCCACCTAATCGACAAAGAAGG 495
||||| |||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 199 AACCACCACCAAAGGAGTAATAACAACATTGGTCCACCTCCACCTAATCGACATAGAAGA 258
Query 496 AATAATGC 503
||||||||
Sbjct 259 AATAATGC 266
> Ahg336533 jgi|Araly1|336533|fgenesh1_pg.C_scaffold_1003098
Length=4002
Score = 2073 bits (1122), Expect = 0.0
Identities = 2273/2814 (81%), Gaps = 137/2814 (5%)
Strand=Plus/Plus
Query 586 GAGAATGTTGTGTTGACAGACCCAAACT-TGCCTCAACTTGTT-CAAGAGTTACAGGAGA 643
|||||| |||||||||||||||||| | ||||||||||| || |||||| ||||||| |
Sbjct 397 GAGAATACTGTGTTGACAGACCCAAA-TCTGCCTCAACTT-TTGCAAGAGATACAGGATA 454
Query 644 AGCT--TGTCAAGAGTTCTATTGAGTGTATGATTTGTTATGACAAGGTTGGGAGGTCTGC 701
|||| || ||| |||||||||||||||||||||||||||| | |||| || |||||||
Sbjct 455 AGCTAATG-AAAG-GTTCTATTGAGTGTATGATTTGTTATGATATGGTTAGGCGGTCTGC 512
Query 702 CAATATCTGGTCATGCTCCAGCTGTTATTCCATCTTCCATATCAACTGTATCAAGAGGTG 761
||||||||||| |||||||| ||||| ||||| |||||| | || |||||||||| ||
Sbjct 513 TAATATCTGGTCTTGCTCCAGTTGTTACTCCATATTCCATCTGAATTGTATCAAGAAATG 572
Query 762 GGCTCGAGCACCAACTTCAGTTGATTTGCTAGCTGAGAAAAACCAAGGT-GATAACTGGA 820
||||||||| |||||||| || |||||| | || || |||||||||||| | ||| ||||
Sbjct 573 GGCTCGAGCGCCAACTTCGGTGGATTTGTTGGCGGATAAAAACCAAGGTAG-TAATTGGA 631
Query 821 GATGTCCAGGTTGCCAATCTGTACAGTTGACATCATCTAAAGAGATTTCC--TATCGGTG 878
||||||||||||| || | ||| ||||||||||| || |||| ||| | | ||||| ||
Sbjct 632 GATGTCCAGGTTGTCAGTTTGTTCAGTTGACATCGTC-AAAG-GATATACAGTATCGATG 689
Query 879 CTTTTGTGGAAAGAG-AAGAGATCCACCGTC-TGACCCATATCTCACTCCACACTCATGC 936
||||||||||||||| || ||| ||| | | ||| |||||| | ||||| ||||| ||
Sbjct 690 CTTTTGTGGAAAGAGGAA-AGACCCATC-TAGTGATCCATATTTGACTCCTCACTCTTGT 747
Query 937 GGGGA-ACCATGTGGGAAACCGCTGGAGAAAGAGTTTGCACCTGCTGAGACGACTGAA-G 994
|| || | ||||||||| ||||||||||||||||||||| | ||| || | || || |
Sbjct 748 GGAGATAT-ATGTGGGAAGCCGCTGGAGAAAGAGTTTGCAACAACTGCGATGGCT-AACG 805
Query 995 AGGAT-CTTTGTCCTCATGTATGTGTTTTGCAGTGTCATCCTGGTCCATGTCCTCCCTGT 1053
| || ||| |||||||||| ||||| |||||||||||||| |||||||| ||||| |||
Sbjct 806 AAAATACTT-GTCCTCATGTTTGTGTATTGCAGTGTCATCCCGGTCCATGCCCTCCATGT 864
Query 1054 AAAGCCTTTGCTCCACCTCGTAGCTGTCCTTGTGGGAAAAAGATGGTTACTACTAGATGC 1113
|| || ||||| |||||||||| |||||||||||| || |||||| | | || ||||||
Sbjct 865 AAGGCATTTGCCCCACCTCGTAACTGTCCTTGTGGTAAGAAGATGATCAGAACCAGATGC 924
Query 1114 TCCGAGCGGAGATCTGATCTTGTTTGTGGGCAGCGTTGCGATAAGCTTCTT-AGTTGCGG 1172
||||| | | |||| ||| | |||||||||| ||||||||||||||||| | ||| ||
Sbjct 925 TCCGAAAGAAAATCTAATCATACTTGTGGGCAGAGTTGCGATAAGCTTCTTTA-TTGTGG 983
Query 1173 GCGTCATCAATGTGAAAGGACATGTCATGTTGGCCCTTGTGATCCTTGTCAGGTACTGGT 1232
||||||| |||||||||| |||||||||| || |||||||||||||||||||||| ||
Sbjct 984 CCGTCATCGATGTGAAAGGGCATGTCATGTGGGGCCTTGTGATCCTTGTCAGGTACAAGT 1043
Query 1233 AAATGCCACATG-TTTCTGCAAGAAAAAAGTGGAGACTGTCATTTGCGGTGATATGAATG 1291
|||||| | || ||| |||||| ||| || ||||| ||| || || ||||| |||||||
Sbjct 1044 CAATGCCTCCTGCTTT-TGCAAGCAAACAGCGGAGAGTGTAATCTGTGGTGACATGAATG 1102
Query 1292 TGAAGGGGGAATTGAAAGCAGAAGATGGTGTCTATTCATGCAGTTTTAACTGTGGGAAGC 1351
||||||| || |||||||||||||||| || | |||||||| || |||||| | || |
Sbjct 1103 TGAAGGGAGAGGTGAAAGCAGAAGATGGCGTGTTTTCATGCAAATTGAACTGTAGAAAAC 1162
Query 1352 CTCTTG-GATGTGGTAATCATTTCTGTTCC-GAGGTATGCCATCCTGGACCTTGCGGGGA 1409
|||| | |||||||| |||| |||| | || || ||||||||||| |||| |||||
Sbjct 1163 AGCTTGAG-TGTGGTAACCATTACTGT-CGTGATGTTTGCCATCCTGGGTCTTGTGGGGA 1220
Query 1410 CTGTGACTTACTGCCCAGTAGAGTTAAGACATGCTATTGTGGGAATACGCGTTTAGAAGA 1469
|||||| || ||||| |||||| ||||| |||||||||||||||| ||| |||| |||||
Sbjct 1221 CTGTGAGTTCCTGCCTAGTAGAATTAAGTCATGCTATTGTGGGAAAACGAGTTTGGAAGA 1280
Query 1470 ACAGATCAGGCAGAGTTGC-TTGGACCCAATTCCTTCTTGTTCAAATGTATGTAGGAAGC 1528
||| ||| ||||||| ||| | |||||||||||||| || || |||| || ||||
Sbjct 1281 GGAGA---GGCGGAGTTGCCTTG-ATCCAATTCCTTCTTGCTCGAACATATGCAGCAAGC 1336
Query 1529 TTCTTCCTTGTAGGT-TACATA-CTTGCAATGAGATGTGCCATGCAGGTGATTGCCCGCC 1586
||||||| ||| || | |||| || |||| || ||||||||| |||||| ||| ||||
Sbjct 1337 TTCTTCCATGT-GGCCTGCATAACT-GCAAAGAAATGTGCCATTCAGGTGGTTGTTCGCC 1394
Query 1587 TTGTTTAGTCCAAGTTAACCAGAAATGCCGGTGTGGGTCAACATC-CAGGGCTGTGGAAT 1645
||||||||||||||| | ||| ||||| ||||| || |||||||| | || |||||||||
Sbjct 1395 TTGTTTAGTCCAAGTGAGCCAAAAATGTCGGTGCGGCTCAACATCTC-GGACTGTGGAAT 1453
Query 1646 GCTACATA-ACAACTTCCTCAGAGGCAGAGAAGTTTGTGTGCGCTAAGCCATGTGGACGT 1704
|||||| | ||| || | |||| |||||||||| | |||||||| |||||||| |||
Sbjct 1454 GCTACA-AGACAGTTT--T-AGAGACAGAGAAGTTCATTTGCGCTAAACCATGTGGCCGT 1509
Query 1705 AAGAAGAACTGTGGGAGACATAGATGT-AGCGAGCGTTGCTGCCCTCTCTTGAACGGG-- 1761
||||| || |||||||| |||||||| | ||||| |||||||||||| |||||
Sbjct 1510 AAGAAAAATTGTGGGAGGCATAGATGCCAT-GAGCGGTGCTGCCCTCTCCTGAACCATCC 1568
Query 1762 AA-GAA-GAATGAT-TTATCTGGCGATTGG---GA-C-CCACATGTCTGCCAAATACCTT 1813
|| ||| || |||| || || ||||||| || | |||| | | ||||| |||||||
Sbjct 1569 AAAGAATGA-TGATCTT-TCAGGCGATTTTTTTGATCTCCACTT-T-TGCCATATACCTT 1624
Query 1814 GTCAGAA-GAAGCTAAGGTGTGGGCAGCATTCCTGTGAATCTTTATGTCACAGTGGACAT 1872
|| ||| || ||||||||| || ||||||||||||||| || | ||||||| ||| |||
Sbjct 1625 GTG-GAAAGAGGCTAAGGTGCGGACAGCATTCCTGTGAAACTCTCTGTCACACTGGTCAT 1683
Query 1873 TGCCCTCCTTGTCTCGAGATGATCTTCACTGATCTTACATGTGCTTGTGG-AAGAACTTC 1931
|| |||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1684 TGTCCTCCTTGCCTCGAGATGATTTTCACTGATCTTACATGTGCTTGTGGGAA-AACTTC 1742
Query 1932 GATTCCTCCTCCACTATCATGTGGGACACCTGTTCCTAGCTGTCAGCTTCCATGCCCGAT 1991
||| ||||||||| || ||||||| || ||||| || || ||||||||||| ||| || |
Sbjct 1743 GATACCTCCTCCATTACCATGTGGAACGCCTGTCCCGAGTTGTCAGCTTCCTTGCTCGGT 1802
Query 1992 TCCTCAGCCTTGTGGCCATTCTGATACGCATGGATGCCATTTTGGAGATTGTCCT-CCTT 2050
||||||||||||||||||||| | ||| ||||| |||||||||||||| || | | ||||
Sbjct 1803 TCCTCAGCCTTGTGGCCATTCCGCTACTCATGGTTGCCATTTTGGAGACTG-CATGCCTT 1861
Query 2051 GTTC--TACCCCTGTGGAAAAGAAGTGCGTTGGTGGTCATGTGGTTCTCAGAAACATACC 2108
|||| ||||| || | | ||||| ||| |||||||||||||||||||||| ||||||||
Sbjct 1862 GTTCAGTACCCATG-G-AGAAGAAATGCATTGGTGGTCATGTGGTTCTCAGGAACATACC 1919
Query 2109 CTGTGGGTTGAAAGACATTAGATGTACCAAGATTTGTGGAAAGACGAGGCGTTGTGGCAT 2168
|||||||| |||||||||||||||| ||| || || |||||||| ||| ||||||||||
Sbjct 1920 GTGTGGGTTAAAAGACATTAGATGTAACAAAATATGCGGAAAGACAAGGTGTTGTGGCAT 1979
Query 2169 GCATGCTTGTGCCAGAACTTGTCACCCGGAGCCTTGTGACA--GCT--TCAATGAATCTG 2224
||||||||||||||| | |||||||| || || ||||||| | | | || | |||||
Sbjct 1980 GCATGCTTGTGCCAGGGCGTGTCACCCTGAACCATGTGACAATGGTGGT-AACGCATCTG 2038
Query 2225 -AAGCAGGTATGCGTGTTACGTGTAGACAGAAATGTGGTGCTCCTAGAACAGATTGCAGA 2283
|| | ||| | |||||||| || | |||| |||||||||||||||| ||| ||||||
Sbjct 2039 TAA-CTGGTCTACGTGTTACTTGCGGTCAGACGTGTGGTGCTCCTAGAAGAGACTGCAGA 2097
Query 2284 CACACTTGTGCAGCACTCTGCCATCCTTCTGCGCCTTGCCCTGACCTA-AGATGTGAATT 2342
||||||||||||||||| ||||||||||||||| |||| ||||| | | |||||||| ||
Sbjct 2098 CACACTTGTGCAGCACTGTGCCATCCTTCTGCGTCTTGTCCTGATC-AGAGATGTGAGTT 2156
Query 2343 TTCAGTCACAATTACTTGTTCATGTGGTCGTATAACCGCTACGGTCCCTTGTGATGCTGG 2402
| || ||| |||| |||||||||||||||| ||||| ||||| ||||||||||||| | |
Sbjct 2157 TCCACTCAAAATTGCTTGTTCATGTGGTCGCATAACAGCTACCGTCCCTTGTGATG-TCG 2215
Query 2403 GGGAAGAAGTGCCAACGGTTCTAATGTTTACTGTGCGGCCTATGATGAAGCCTCTGTTTT 2462
| | ||||||| |||| || | | ||| | | ||||| || |||| ||||
Sbjct 2216 GAG--GAAGTGCTGGTGGTTTTAGCGGTGACTCTAT--C-TATGA--AA-CCTCCATTTT 2267
Query 2463 ACAGAAGCTTCCAGCT-CCACTTCAGCCTGTTGAATCGAGCGGAAACCGTATCCCCCTCG 2521
||||||||||||| | || || || ||||| || || | || || | || || || |
Sbjct 2268 GCAGAAGCTTCCAG-TGCCGCTCCAACCTGTCGAGTCAAATGGGAATAGGATTCCTCTTG 2326
Query 2522 GGCAGAGAAAGCTTTCGTGTGATGATGAGTGTGCGAAGCTGGAGCGTAAGCGGGTTCTTC 2581
|||||||||||||| | |||||||| |||||||| ||| |||| ||||||||||||||||
Sbjct 2327 GGCAGAGAAAGCTTACTTGTGATGAAGAGTGTGCTAAGGTGGAACGTAAGCGGGTTCTTC 2386
Query 2582 AAGATGCATTTGATATAACTCCCCCAAATCTGGAGGCATTACATTTC-AGCGAGAATTCT 2640
|||||||||||||||| ||||| |||| | | || || |||||||| | |||||| ||
Sbjct 2387 AAGATGCATTTGATATCACTCCTCCAAGTTTAGACGCTTTACATTTTGAT-GAGAATACT 2445
Query 2641 GCTATGACAGAGATTATTTCAGACCTTTATAGGCGTGATCCAAAGTGGGTACTGGCTGTT 2700
|| ||||| ||||| |||||||| |||||||| ||||| || |||||||| || || |||
Sbjct 2446 GCCATGACTGAGATCATTTCAGATCTTTATAGACGTGACCCTAAGTGGGTGCTAGCAGTT 2505
Query 2701 GAAGAGCGCTGCAAGTTCTTGGTACTTGGGAAAG-CAAGAGGAAGCACAAGT-G--CCCT 2756
|| ||||| |||||||||||||||||||| |||| | ||||| ||||||||| | ||||
Sbjct 2506 GAGGAGCGATGCAAGTTCTTGGTACTTGG-AAAGGCCAGAGGTAGCACAAGTAGTTCCCT 2564
Query 2757 TAAGGTCCATATCTTCTGCCCGATGCAGAAGGATAAACGAGACACGGTTCGACTT-ATAG 2815
||| ||||||||||||| | ||| | ||||||||| |||| | || || || ||||
Sbjct 2565 AAAGCTCCATATCTTCTGTACTATGGAAAAGGATAAAAGAGATGCAGTACGG-TTGATAG 2623
Query 2816 CTGAGAGGTGGAAACTTGGTGTTAGCAACGCAGGGTGGGAGCCAAAACGGTTTACAGTGG 2875
|||||||||||||||||| ||| ||||| || ||||||||||||||||| ||| ||||||
Sbjct 2624 CTGAGAGGTGGAAACTTGCTGTAAGCAATGCTGGGTGGGAGCCAAAACGCTTTGCAGTGG 2683
Query 2876 TTCACGTAACAGCAAAA-TCGAAACCGCCAACAAGGATCATTGGAG-CTAGGGGTGGTGC 2933
|| |||| ||| || || || ||||| || |||||||||||||||| | | || || |||
Sbjct 2684 TTTACGTTACA-CAGAAGTCAAAACCCCCTACAAGGATCATTGGAGTCAAAGG-TGTTGC 2741
Query 2934 TATCTCGATAGGAGGGCCACACCCACC-GTTCTATGATTCGCTGGTGGATATGGATCCTG 2992
|| | ||| ||||| ||| |||| | || |||| | ||||| ||||||||||||
Sbjct 2742 C-TCA-GC-AGGCGGGCCCCACGCACCAGC-CTTTGATCCACTGGTTGATATGGATCCTC 2797
Query 2993 GACTTGTGGTTTCTTTT-CTGGATCTTCCGAGAGAGGCGAATATCAGCGCCTTGGTACTG 3051
|||| ||||||| |||| ||| |||| || || || || |||||||| |||||||| |||
Sbjct 2798 GACTCGTGGTTTGTTTTTCTG-ATCTCCCAAGGGAAGCTAATATCAGTGCCTTGGTTCTG 2856
Query 3052 AGATTTGGGGGTGAATGTGAGCTTGTTTGGCTGAATGACAAGAATGCTTTAGCGGTGTTC 3111
|||||||| || ||||| |||||||||||| |||||||||||||||| ||||| || |||
Sbjct 2857 AGATTTGGAGGCGAATGCGAGCTTGTTTGGTTGAATGACAAGAATGCATTAGCCGTCTTC 2916
Query 3112 CACGA-CCATGCCCGAGCTGCCACTGCCATGAGGAGGCTTGAGCACGGTTCAGTATATCA 3170
||||| ||| | ||||| |||||||||||||| || ||||| |||||||| || || ||
Sbjct 2917 CACGATCCA-GTTCGAGCAGCCACTGCCATGAGAAGACTTGAACACGGTTCTGTGTACCA 2975
Query 3171 TGGAGCTGT-G--GTTGTCCAGAGCGGCGGGCAATCTCCATCACTTAATAATGTATGGGG 3227
||||| || | ||||| |||| | || |||||||| || || | ||| | ||||||
Sbjct 2976 AGGAGCGGTAGTTGTTGTACAGAACCAAGGACAATCTCCGTCTCTCAGTAACGCATGGGG 3035
Query 3228 AAAATTACCTGGCAGCTCGGCGTGGGATGTTGACAAAGGAAATCCATGGAGGAGAG-CTG 3286
|| | ||| |||||||||| | || | | ||||||||||||| | || |||
Sbjct 3036 AA--T-ACCAGGCAGCTCGGT-TAAGA-G---A----GGAAATCCATGGAATA-AGGCTG 3082
Query 3287 TGATTCAGGAGAGT--GATGACTCCTGGGGAGCTGAAGATTCCCCCATTGGAGG 3338
||||| |||| | | |||||||| |||||| | |||||||| |||||||||||
Sbjct 3083 TGATTAAGGA-A-TCAGATGACTCTTGGGGAACAGAAGATTCTCCCATTGGAGG 3134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147282807510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5