BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10190.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890803 jgi|Araly1|890803|Al_scaffold_0007_2789 1491 0.0
Ahg890805 jgi|Araly1|890805|Al_scaffold_0007_2791 1336 0.0
Ahg330001 jgi|Araly1|330001|fgenesh1_pm.C_scaffold_7002228 937 0.0
Ahg946833 jgi|Araly1|946833|scaffold_703062.1 132 8e-30
> Ahg890803 jgi|Araly1|890803|Al_scaffold_0007_2789
Length=1212
Score = 1491 bits (807), Expect = 0.0
Identities = 1076/1203 (89%), Gaps = 29/1203 (2%)
Strand=Plus/Plus
Query 47 AGTGATATGGATGTTCTTAATGTGTTGCATCTTTGGTAACATAATTATAAATCATAACAA 106
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 18 AGTGATATGGATGTTCTTAATGTGTTGCATCTTTGGTAACATAATTGTAAGTCATCACAA 77
Query 107 TGACTTTGTTGAAGCTAAGAGCCTTTCTAAAGT-TGAAGATTTAGAAATCGAGAAGAGAC 165
|||||| || ||||| |||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 78 TGACTTCGTGGAAGCCAAGAGCTTTTCTAAA-TCTGAAGATTTAGAAATCGAGAAGAGAC 136
Query 166 TAAGGACTATCAACAAACCTGCTGTCAAGATCATCAAGAGTATAGATGGAGAAAGATACG 225
||| ||||||||||||||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 137 TAAAGACTATCAACAAACCCGCCGTCAAGATCATCAAGACTATAGATGGAGAAAGATACG 196
Query 226 GATGTGTGGATTTCTTCAAGCAACCAGCATTTGATCACCCTTCAATGAAGAATCACACAT 285
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 197 GATGTGTGGATTTCTTCAAGCAACCAGCATTTGATCATCCTTCTATGAAGAATCATACAT 256
Query 286 ACCATTACAAGATGCGCCCAATATGGAAAAGAATGAGAGAAAGAAAGACAAATAATACCA 345
|||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||
Sbjct 257 ACCATTACAAGATGCGTCCAATATGGAAAGGAATGAGAGAAAGAAAGACAAACAATACCG 316
Query 346 ATTTTGGTTACCTATGGGAGAATGGTGTGGGTTGTCCCATTGGTACCGTCCCCATACAAA 405
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GTTTTGGTTACTTATGGGAGAATGGTGTGGGTTGTCCCATTGGTACCGTCCCCATACAAA 376
Query 406 GAGTCACCAAAGAAGATCTTTTGAGATTCGACTCATTTGGCGATAATCATAAACCTCGTG 465
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 377 GAGTCACTAAAGACGATCTTTTGAGATTCGACTCATTTGGCGATAATCATAAACCCCGTG 436
Query 466 GCTCTTGGAATTTTACCACTGATGATACTAATAG------TGA---CAACCAACATCATT 516
|||||||||| ||||||| ||||| ||||||| | | | ||||||||||||
Sbjct 437 GCTCTTGGAACACTACCACTTATGATCCTAATAGTCCTCTTCATCCCGACCAACATCATT 496
Query 517 TTGCGGTGGCTAGGACGGTTG-GCCAAGACAAGAGGTTCAATGGAGCAACGATGGAACTT 575
|||||||||| ||||| ||| ||| |||||| ||||||||||||||||| |||||||||
Sbjct 497 ATGCGGTGGCTCGGACGTTTGCGCC-AGACAAAAGGTTCAATGGAGCAACAATGGAACTT 555
Query 576 TGTTTAACCGCTCCTAAGGTTAGGCCAAACCAATTCAGTGCTTCTCGACTTCACATTCAG 635
||| ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||
Sbjct 556 TGTATAACCGCTCCTGCGGTTAAACCAACCCAATTCAGTGCTTCTCGACTTCACATTCAG 615
Query 636 ATTGGAAGTGATTTCCTCCAAACCGGTTTTACTGTAAATCCA-ACATTGTACAAGGAC-G 693
|||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 616 CTTGGAAGTGATTTCATCCAAACCGGTTTTACTGTAAATCCAGA-ATTGTACAAGGACAG 674
Query 694 ACCAACCTCGGACTTTCGTCTATACAAATTCAGGTGGAAAATCATGTTACAATAATGACT 753
|||||||||||||| ||||||| ||||||||||||| |||||||||||||||| |||
Sbjct 675 -CCAACCTCGGACTTACGTCTATGCAAATTCAGGTGGTAAATCATGTTACAATAGCAACT 733
Query 754 GCGACGTAGGAATGATACTCGTTCGTCAAGATTTTC-ATCTTGGTATGGCATTATTGCCA 812
||||||| |||||||||||||||||||||||||||| | |||||| |||||||| ||||
Sbjct 734 GCGACGTTGGAATGATACTCGTTCGTCAAGATTTTCCA-CTTGGTTTGGCATTAAAGCCA 792
Query 813 GTGTCTGTTCGTGGTGCTAAGACAACTCATTATGCAATCTTCGGTCTAATCAAGGACCAA 872
|| ||||||||||||||||||| || | | |||| |||||||||||||||||||||| ||
Sbjct 793 GTCTCTGTTCGTGGTGCTAAGAAAAGTGAATATGGAATCTTCGGTCTAATCAAGGACGAA 852
Query 873 ATAAATGGAAATTGGTGGTTGCAATTTGGTAATGCTGCAGAGGAAGTTGGATTTTGGCCG 932
| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct 853 AAAAATGGAAATTGGTGGTTGCAATTTGGTGATGCGGCAGAGGAAATTGGATTTTGGCCG 912
Query 933 TCGAGTAGATTTCATCAAAGCTCTGGAAATTTGGTGGAGTGGGGTGGAGAAGCGTATAGT 992
|||||||| ||||||||||||||||||||| | || |||||||||||||||| ||| ||
Sbjct 913 TCGAGTAGGTTTCATCAAAGCTCTGGAAATCTCGTCGAGTGGGGTGGAGAAGTGTACAGC 972
Query 993 GCATCACAGCCGAGTCCTCAAATGGGATATGGATATTTTCTTGATG-CTAGTATGCGCT- 1050
|| |||| |||||||||| |||||||||||||||||||||||| | | | |||| | |
Sbjct 973 GCCTCACTGCCGAGTCCTGAAATGGGATATGGATATTTTCTTGCTCACGA-TATG-GTTT 1030
Query 1051 ACGATGCATATATCAAACGGATATCTGTAATCGACGGTTTTAATAACATTGACCGCAAAG 1110
||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| ||
Sbjct 1031 ACGATGCATATATCAAACGGATATCCGTACTTGACGGTTTTAATAACATTGACCGCAGAG 1090
Query 1111 TGGCATATACCGAAAAAT-TCGTGGACGATACTCGTGGCTACCAAGTTGTAGACGACTAT 1169
||| |||||| ||||||| | |||||| | |||| ||||||||||||| | ||||||||
Sbjct 1091 TGGAATATACAGAAAAATAT-GTGGACAACACTCATGGCTACCAAGTTATGGACGACTAC 1149
Query 1170 AATA-TTCCCGCATACCCAGAAG-CCGGTCATATAATCTTTTACGGTGGTCCGGGGAATA 1227
|| | |||| |||||| ||| ||||||||||||| |||| ||||||||||| ||||
Sbjct 1150 AAAAATTCCAA-ATACCCT-AAGGCCGGTCATATAATATTTTTTGGTGGTCCGGGAAATA 1207
Query 1228 TCT 1230
|||
Sbjct 1208 TCT 1210
> Ahg890805 jgi|Araly1|890805|Al_scaffold_0007_2791
Length=1212
Score = 1336 bits (723), Expect = 0.0
Identities = 1050/1205 (87%), Gaps = 33/1205 (3%)
Strand=Plus/Plus
Query 47 AGTGATATGGATGTTCTTAATGTGTTGCATCTTTGGTAACATAATTATAAATCATAACAA 106
|||||| ||||||||||||||| |||||||||||||| ||||||||| || |||||||||
Sbjct 18 AGTGATGTGGATGTTCTTAATGAGTTGCATCTTTGGTCACATAATTACAAGTCATAACAA 77
Query 107 TGACTTTGTTGAAGCTAAGAGCCTTTCTAAAGTTGAAGATTTAGAAATCGAGAAGAGACT 166
|| ||| || ||||| |||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 78 TGTCTTCGTAGAAGCCAAGAGCTTTTCTAAATTTGAAGATTTAGAAATCGAGAAGAGACT 137
Query 167 AAGGACTATCAACAAACCTGCTGTCAAGATCATCAAGAGTATAGATGGAGAAAGATACGG 226
|| | ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 138 AAAGTCTATCAACAAACCCGCTGTCAAGATCATCAAGACTATAGATGGAGAAAGATACGG 197
Query 227 ATGTGTGGATTTCTTCAAGCAACCAGCATTTGATCACCCTTCAATG-AAGAATCACACAT 285
||||||||| |||||||||||||||||||||||||| ||||| ||| || ||||||||||
Sbjct 198 ATGTGTGGACTTCTTCAAGCAACCAGCATTTGATCATCCTTCTATGCAA-AATCACACAT 256
Query 286 ACCATTACAAGATGCGCCCAATATGGAAAAGAATGAGAGAAAGAAAGACAAATAATACCA 345
|||||||||||||||| || ||||||||| ||||||||||||||| |||||| ||||||
Sbjct 257 ACCATTACAAGATGCGTCCGATATGGAAAGGAATGAGAGAAAGAAGGACAAACAATACCG 316
Query 346 ATTTTGGTTACCTATGGGAGAATGGTGTGGGTTGTCCCATTGGTACCGTCCCCATACAAA 405
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GTTTTGGTTACTTATGGGAGAATGGTGTGGGTTGTCCCATTGGTACCGTCCCCATACAAA 376
Query 406 GAGTCACCAAAGAAGATCTTTTGAGATTCGACTCATTTGGCGATAATCATAAACCTCGTG 465
||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||| || |
Sbjct 377 GAGTCACTAAAGACGATCTTCTGAGATTGGACTCATTTGGCGATAATCATAAACCCCGAG 436
Query 466 GCTCTTGGAATTTTACCACTGATGATACTAATAGTG------ACAAC--C-AACATCATT 516
|||||||||| |||||||||| || ||||||||| | ||| | |||||||||
Sbjct 437 GCTCTTGGAACACTACCACTGATAATTCTAATAGTGTCCTCCATAACGACAAACATCATT 496
Query 517 TTGCGGTGGCTAGGACGGTT-G-GCCAAGACAAGAGGTTCAATGGAGCAACGATGGAACT 574
|||||||||| || | || | |||| | ||||||||||||||||||| ||||||||
Sbjct 497 ATGCGGTGGCTCGGTC-ATTAGACCCAA-CCCAGAGGTTCAATGGAGCAACAATGGAACT 554
Query 575 TTGTTTAACCGCTCCTAAGGTTAGGCCAAACCAATTCAGTGCTTCTCGACTTCACATTCA 634
|||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 555 TTGTATAACCGCTCCTAAGGTTAAGCCAGCCCAATTCAGTGCTTCTCGACTTCACATTCA 614
Query 635 GATTGG-AAGTGATTTCCTCCAAACCGGTTTTACTGTAAATCCAACATTGTACAAGGACG 693
|||||| ||| |||||| ||||||||||||| || ||||||||| ||||||||||||||
Sbjct 615 GATTGGAAAG-GATTTCATCCAAACCGGTTTCACCGTAAATCCAGCATTGTACAAGGAC- 672
Query 694 A-CCAACCTCGGACTTTCGTCTATACAAATTCAGGTGGAAAATCATGTTACAATAATGAC 752
| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 673 AGCCAACCCCGGACTTTCGTCTATACAAATTCAGGTGGAAAATCATGTTACAATAGCAAC 732
Query 753 TGCGACGTAGGAATGATACTCGTTCGTCAAGATTTTC-ATCTTGGTATGGCATTATTGCC 811
||| |||| || ||| ||||||||||||||||||| | | ||||||| ||| || |||||
Sbjct 733 TGCAACGTTGGGATGTTACTCGTTCGTCAAGATTTCCCA-CTTGGTACGGCGTTGTTGCC 791
Query 812 AGTGTCTGTTCGTGGTGCTAAGACAACTCATTATGCAATCTTCGGTCTAATCAAGGACCA 871
||||||| | || |||||||||| || ||| |||| |||||||||||||||||||||| |
Sbjct 792 AGTGTCTATCCGCGGTGCTAAGATAAGTCACTATGGAATCTTCGGTCTAATCAAGGACGA 851
Query 872 AATAAATGGAAATTGGTGGTTGCAATTTGGTAATGCTGCAGAGGAAGTTGGATTTTGGCC 931
|| ||||||||| |||||||||||||||||| || ||| || |||||||||||||||||
Sbjct 852 AAAAAATGGAAACTGGTGGTTGCAATTTGGTGATAATGCGGAAGAAGTTGGATTTTGGCC 911
Query 932 GTCGAGTAGATTTCATCAAAGCTCTGGAAATTTGGTGGAGTGGGGTGGAGAAGCGTATAG 991
||||||||| |||||||||||||||||||||| || |||||||| ||||||| ||| ||
Sbjct 912 GTCGAGTAGGTTTCATCAAAGCTCTGGAAATTACGTCGAGTGGGGCGGAGAAGTGTACAG 971
Query 992 TGCATCACA-GCCGAGTCCTCAAATGGGATATGGATATTTTCTTGATGCT-AGTATGCGC 1049
||||| || |||||||||| |||||||||||||| ||| || || || | ||||||
Sbjct 972 TGCAT-ACCTGCCGAGTCCTGAAATGGGATATGGACATTATCCTGTTGAGGA-TATGCGT 1029
Query 1050 TACGATGCATATATCAAACGGATATCTGTAATCGACGGTTTTAATAACATTGACCGCAAA 1109
|||||||||||||||||||| ||| | ||| |||||||||||||| |||||||||||| |
Sbjct 1030 TACGATGCATATATCAAACGTATAACCGTACTCGACGGTTTTAATTACATTGACCGCAGA 1089
Query 1110 GTGGCATATAC-CGAAAAATTCGTGGACGAT-ACTCGTGGCTAC-CAAGTTGTAGACGAC 1166
||||||||| | |||| |||||| |||| | | ||| |||||| || || | ||||||
Sbjct 1090 GTGGCATAT-CTCGAAGAATTCGCGGACAACGA-TCGGGGCTACACA-GTAATTGACGAC 1146
Query 1167 TATAATATTCCCGCATACCCAGAAG-CCGGTCATATAATCTTTTACGGTGGTCCGGGGAA 1225
|| | | || | |||||| ||| |||||||||||||||||| ||||||||||| ||
Sbjct 1147 TACAGCACTCACAAATACCCT-AAGGCCGGTCATATAATCTTTTTTGGTGGTCCGGGAAA 1205
Query 1226 TATCT 1230
|||||
Sbjct 1206 TATCT 1210
> Ahg330001 jgi|Araly1|330001|fgenesh1_pm.C_scaffold_7002228
Length=1206
Score = 937 bits (507), Expect = 0.0
Identities = 994/1220 (81%), Gaps = 69/1220 (6%)
Strand=Plus/Plus
Query 47 AGTGATATGGATGTTCTTAATGTGTTGCATCTTTGGTAACATAATTATAAATCATAACAA 106
|||||||||||||||||||||||| | | ||||| |||||||| ||| |||||||||
Sbjct 18 AGTGATATGGATGTTCTTAATGTG-T--A---TTGGTCACATAATTGTAAGTCATAACAA 71
Query 107 TGACTTTGTTGAAGCTAAGAGCCTTTCTAAAGT-TGAAGATTTAGAAATCGAGAAGAGAC 165
|||||| || ||||| |||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 72 TGACTTCGTGGAAGCCAAGAGCTTTTCTAAA-TCTGAAGATTTAGAAATCGAGAAGAGAC 130
Query 166 TAAGGACTATCAACAAACCTGCTGTCAAGATCATCAAGAGTATAGATGGAGAAAGATACG 225
||| | ||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 131 TAAAGTCTATCAACAAACCCGCTGTCAAGATCATCAAGACTATAGATGGAGAAAGATACA 190
Query 226 GATGTGTGGATTTCTTCAAGCAACCAGCATTTGATCACCCTTCAATGAAGAATCACACAT 285
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 191 GATGTGTGGATTTCTTCAAGCAACCAGCATTTGATCATCCTTCTATGAAGAATCATACAT 250
Query 286 ACCATTACAAGATGCGCCCAATATGGAAAAGAATGAGAGAAAGAAAGACAAATAATACCA 345
|||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||||||
Sbjct 251 ACCATTACAAGATGCGTCCAATATGGAAAGGAATCAGAGAAAGAAAGACAAACAATACCG 310
Query 346 ATTTTGGTTACCTATGGGAGAATGGTGTGGGTTGTCCCATTGGTACCGTCCCCATACAAA 405
|||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 311 GTTTTGGTTACTTATGGGAGAATGGTGTGGGTTGTCCCATTGGTACGGTCCCTATTCAAA 370
Query 406 GAGTCACCAAAGAAGATCTTTTGAGATTCGACTCATTTGGCGATAATCATAAACCTCGTG 465
||||||||||||| |||||||||||||| |||||||||| |||||||||||||| ||||
Sbjct 371 GAGTCACCAAAGACGATCTTTTGAGATTAGACTCATTTGTTGATAATCATAAACCCCGTG 430
Query 466 GCTCTTGGAATTTTACCACTGATGATACT-AATAGTGA----CA-----ACCAACATCAT 515
| |||||||| ||||||| | || || |||| | || |||||||||||
Sbjct 431 GTTCTTGGAACACTACCACTTTTAAT-CTTAATAATCCTTTTCATCCCGACCAACATCAT 489
Query 516 TTTGCGGTGGCTAGGACGGTTGGCCA-AGACAAG-AGGTTCAATGGAGCAACGATGGAAC 573
| |||||| ||| | ||| || || || ||| |||||| ||||||||||||||| ||
Sbjct 490 TATGCGGTAGCTCGAACGAA-GGACATAGG-AAGGAGGTTCCATGGAGCAACGATGGGAC 547
Query 574 TTTGTTTAACCGCTCCTAAGGTTAGGCCAAACCAATTCAGTGCTTCTCGACTTCACATTC 633
||||| |||| ||||||||||||| ||||| |||||||||| |||| ||||||||||||
Sbjct 548 TTTGTATAACGGCTCCTAAGGTTAAGCCAACCCAATTCAGTAATTCTAGACTTCACATTC 607
Query 634 AGATTGGAAGTGATTTCCTCCAAACCGGTTTTACTGTAAATCCAACATTGTACAAGGACG 693
|||| ||||| |||||||||||| ||||||| |||||||||||| |||||||||||||
Sbjct 608 AGATGGGAAGGGATTTCCTCCAAGCCGGTTTGACTGTAAATCCAGTATTGTACAAGGACA 667
Query 694 ACCAACCTCGGACTTTCGTCTATACAAATTCAGGTGGAAAATCATGTTACAATAATGACT 753
| |||||||||||||| || |||||| | || |||||||||||||||||||| |||
Sbjct 668 AGCAACCTCGGACTTTTGTTTATACATCTGCAAATGGAAAATCATGTTACAATAGCAACT 727
Query 754 GCGACGTAGGAATGATA-CTCGTTCGTCAAGATTTT-CATCTTGGTATGGCATTATTGCC 811
|| |||| ||||||||| | | | ||||| || || || |||||| ||||||| |||
Sbjct 728 GCAACGTTGGAATGATAGC-CATCCGTCATGACTTAACA-CTTGGTCTGGCATTGCAGCC 785
Query 812 AGTGTCTGTTCGTGGTGCTAAGACAACTCATTATGCAATCTTCGGTCTAATCAAGGACCA 871
||||||| ||||||| ||| | ||| | | ||| ||| |||||||| |||| ||| |
Sbjct 786 AGTGTCTACTCGTGGTTCTAGGCCAAGTTACTATACAAAGATCGGTCTAGTCAAAGAC-A 844
Query 872 AATAAAT--GGAAATTGGTGGTTGC-AATT--TGGTAATGCTGCAG--AGGAAGT-T-GG 922
| |||| |||||||||| ||||| ||| ||||||| || || | || | | ||
Sbjct 845 GA-AAATCTGGAAATTGGTTGTTGCGAATGGGTGGTAATTATG-AGCCAATAAATATTGG 902
Query 923 ATTTTGGCC-GT-CGAGTAGATTTCATCAAAGCTCTGGAAATTTGGTGGAGTGGGGTGGA 980
| ||||||| | | | ||| ||||| ||| ||| |||| |||| || ||||||||||||
Sbjct 903 ACTTTGGCCAGGGC-A-TAGGTTTCAACAAGGCTTTGGAGATTTTGTCGAGTGGGGTGGA 960
Query 981 GAAGCGTATAGTGCATCA-CAGCCGAGTCCTCAAATGGGATATGGATATTTTCTTGATGC 1039
|||| ||| || |||| | | |||||||||||||||||||||||||||||| | || |
Sbjct 961 GAAGTGTACAGCGCAT-ATCTGCCGAGTCCTCAAATGGGATATGGATATTTCCCA-ATTC 1018
Query 1040 TAGTATGC--GCTACGATGCATATATCAAACGGATATCTGTAATCGACGGTT-TTAATAA 1096
|| || | || |||||||||||| ||| ||||| || ||||| || ||| |||
Sbjct 1019 -AGGATAAAAGTTATGATGCATATATCCAACACATATCCATACTCGACCGTAATTA-TAA 1076
Query 1097 CATTGACCGCAAAGTGG-CATATAC-CGAAAAATTCGT-GGACGATACTCGTGGCTACCA 1153
||| |||||||| |||| | ||| | |||| | || | |||| | | ||| ||||| ||
Sbjct 1077 CATAGACCGCAATGTGGAC-TAT-CTCGAAGACTTT-TCGGACAACAATCGAGGCTATCA 1133
Query 1154 AGTTG-TAGACGACTATAATATTCCC-G-CATACCCAGAAGCCGGTCATATAATCTTTTA 1210
||| | ||||| || | || || | |||| | | || ||||| |||||||||||
Sbjct 1134 AGT-GATAGAC-ACCCGAG-AT-CCTAGACATAGC--G--GC-GGTCACATAATCTTTTA 1184
Query 1211 CGGTGGTCCGGGGAATATCT 1230
||||||||||| |||||||
Sbjct 1185 TGGTGGTCCGGGAAATATCT 1204
> Ahg946833 jgi|Araly1|946833|scaffold_703062.1
Length=850
Score = 132 bits (71), Expect = 8e-30
Identities = 158/199 (79%), Gaps = 10/199 (5%)
Strand=Plus/Plus
Query 915 GAAGTTGGATTTTGGCCGTCG-A-GTAGATTTCATCAAAGCTCTGGAAATTTGGTGGAGT 972
||| ||||| |||||||| | | |||| ||||| ||||||| |||| |||| || ||||
Sbjct 588 GAAATTGGACTTTGGCCG--GAACGTAGGTTTCAACAAAGCTTTGGAGATTTTGTCGAGT 645
Query 973 GGGGTGGAGAAGCGTATAGTGCATCACAGCCGAGTCCTCAAATGGGATATGGATATTTTC 1032
|||||||||||| || | ||||||| |||||||||||||||||||||||||||||| |
Sbjct 646 GGGGTGGAGAAGTATACACCGCATCACTGCCGAGTCCTCAAATGGGATATGGATATTTCC 705
Query 1033 TTGATGCTAG-TATGC-GCTACGATGCATATATCAAACGGATATCTGTAATCGACGGTT- 1089
|| | | ||| | | || |||||||||||| ||| |||| | || |||||| |
Sbjct 706 CA-ATTCAAAATAT-CAGGTATGATGCATATATCGAACAGATAGCCATATTCGACGATAA 763
Query 1090 TTAATAACATTGACCGCAA 1108
||| |||||| ||||||||
Sbjct 764 TTA-TAACATAGACCGCAA 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5