BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10200.1
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471134 jgi|Araly1|471134|fgenesh2_kg.1__1088__AT1G10200.1 1397 0.0
> Ahg471134 jgi|Araly1|471134|fgenesh2_kg.1__1088__AT1G10200.1
Length=916
Score = 1397 bits (756), Expect = 0.0
Identities = 874/928 (94%), Gaps = 20/928 (2%)
Strand=Plus/Plus
Query 1 AACAATAATTGACAatctctttctttcatcttcatcttattcttctttatctctctctct 60
|||||||||||||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 1 AACAATAATTGACAATCTCTTTCTTTCATCTTCATCCTATTCCTCTTTA------TCTCT 54
Query 61 ctctcAAGACTATTGAGCTTCTTTCTTTTTTCCTGAGTC--T--TTTAGTCTGATCTCTT 116
||||||| || |||||| | ||||||||||||||||| | ||||||||||||||||
Sbjct 55 CTCTCAAAACGATTGAG---C-TTCTTTTTTCCTGAGTCTTTACTTTAGTCTGATCTCTT 110
Query 117 ACAAGAATGGCGTTCGCAGGAACAACCCAGAAATGCATGGCATGTGACAAAACAGTTTAT 176
|||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 111 ACAAAAATGGCGTTCGCAGGAACAACCCAAAAATGCATGGCCTGTGACAAAACCGTTTAT 170
Query 177 CTTGTCGACAAGTTAACCGCCGATAACCGGGTCTACCACAAAGCTTGTTTCCGATGTCAC 236
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 CTTGTTGACAAGTTAACCGCCGATAACCGGGTCTACCACAAAGCTTGTTTCCGATGTCAC 230
Query 237 CATTGCAAAGGAACTCTCAAGCTTAGCAATTACAACTCCTTTGAAGGAGTTCTCTACTGC 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 231 CATTGCAAAGGAACTCTCAAGCTTAGCAATTACAACTCCTTTGAAGGAGTTCTCTATTGC 290
Query 297 AGACCACATTTCGATCAAAACTTCAAGAGAACTGGAAGTCTTGAGAAAAGCTTCGAAGGG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 AGACCACATTTCGATCAAAACTTCAAGAGAACTGGAAGTCTTGAGAAAAGCTTCGAAGGG 350
Query 357 ACACCAAAGATTGGGAAACCTGATAGGCCTTTGGAGGGAGAGAGACCTGCTGGAACCAAA 416
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 ACACCAAAGATTGGAAAACCTGATAGGCCTTTGGAGGGAGAGAGACCTGCTGGAACCAAA 410
Query 417 GTTTCGAATATGTTTGGTGGAACACGAGAGAAATGCGTTGGTTGCGACAAAACCGTGTAT 476
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 411 GTGTCGAATATGTTTGGTGGAACACGAGAGAAATGCGTTGGCTGCGATAAAACCGTGTAT 470
Query 477 CCAATTGAGAAGGTATCGGTGAATGGAACATTGTACCACAAGAGCTGCTTCAAGTGTACA 536
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 471 CCAATTGAGAAGGTGTCGGTGAATGGGACATTGTACCACAAGAGCTGCTTCAAGTGTACA 530
Query 537 CATGGAGGCTGCACGATAAGCCCTTCGAATTACATAGCTCACGAGGGTAAGCTATATTGC 596
|||||||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 531 CATGGAGGTTGCACCATAAGCCCGTCGAATTACATAGCTCACGAGGGAAAGCTTTATTGC 590
Query 597 AAGCATCATCATATTCAGCTGATCAAGGAGAAAGGAAACTTGAGCCAGCTCGAAGGAGGA 656
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 591 AAGCATCATCATATTCAGCTGATCAAAGAGAAAGGAAACTTGAGCCAGCTCGAAGGAGGA 650
Query 657 GGAGAGAATGCCGCCAAGGACAAAGTCGTCGCTGCTTAAAGAAACAATTCAATCTCTCTG 716
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 651 GGAGAGAATGCCGCTAAGGACAAAGACGTCGCTGCTTAAAGAAACAATTCAATCTCTCTG 710
Query 717 GGATGATTTTGACTATCGAAGAATCAAAAGAGTCACTACTTCTCCATCGATCGATAACAT 776
| ||||||||||| || ||||||||||||||||||||||| || | ||||||||||||||
Sbjct 711 G-ATGATTTTGACAATGGAAGAATCAAAAGAGTCACTACTACTTC-TCGATCGATAACAT 768
Query 777 ATATTGgttttgtttcttcctacgtttgtgtttttctttttggtctttaatatgtt-tt- 834
||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||
Sbjct 769 ATATTGGTTTTGTTTCTTCTTACGTTTGTGTTTGTCTTTTTGGTCTTTAAGATGTTGTTG 828
Query 835 ttttttttt--GGGACCTTTGTTCACTCTTTTATTGGGTTTCTTGAAATGAAACTAGAGA 892
||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 829 TTTTTTTTTTTGGGATCTTTGTTCACTCTTTTATTGGGTTTCTTGAGATGAAACTAGAGA 888
Query 893 AACAAAGAAATAATGGATGTTTGCTTAT 920
|||| |||||||||||||||||||||||
Sbjct 889 AACAGAGAAATAATGGATGTTTGCTTAT 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36483631569
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5