BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10210.1
Length=1631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471135 jgi|Araly1|471135|fgenesh2_kg.1__1089__AT1G10210.1 2093 0.0
Ahg907544 jgi|Araly1|907544|Al_scaffold_0002_625 1068 0.0
> Ahg471135 jgi|Araly1|471135|fgenesh2_kg.1__1089__AT1G10210.1
Length=1494
Score = 2093 bits (1133), Expect = 0.0
Identities = 1348/1445 (93%), Gaps = 42/1445 (3%)
Strand=Plus/Plus
Query 1 GTCAACTGTCCGAGCGTTGGCC----AAATCTCTCTCACTTCCACAGGTTTCTCTCTCCG 56
||||||||||||||||||| || ||||||||||||||| ||||| |||||||||| |
Sbjct 1 GTCAACTGTCCGAGCGTTGACCAAATAAATCTCTCTCACTTTCACAGCTTTCTCTCTCTG 60
Query 57 GCCAAATCTAACCTCCGGGGAACGTCGTTGGT--C--A---CTTATCACCGAGGGAAAAC 109
|||||||||||||||||| || | |||||||| | | ||||||||||||| ||||
Sbjct 61 GCCAAATCTAACCTCCGGCGATCATCGTTGGTCACTGATTTCTTATCACCGAGGAAAAAT 120
Query 110 AAAAAATGGCGACTTTGGTTGATCCTCCTAATGGGATAAGGAAT-GAAGGGAAGCATTAC 168
|||||||||||||| |||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 121 AAAAAATGGCGACTCTGGTTGATCCTCCTAATGGGATTA-GAATCGAAGGGAAGCATTAC 179
Query 169 TTCTCAATGTGGCAAACTCTGTTCGAGATCGACACTAAGTACATGCCTATCAAGCCTATT 228
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 180 TTCTCAATGTGGCAAACTCTGTTCGAGATCGACACTAAATACATGCCAATCAAGCCGATT 239
Query 229 GGTCGTGGAGCTTACGGTGTTGTCTGCTCCTCTGTTAACAGTGACACCAACGAGAAAGTT 288
|||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||
Sbjct 240 GGTCGTGGAGCTTACGGTGTAGTCTGCTCCTCTGTTAACACTGATACCAACGAGAAAGTA 299
Query 289 GCTATCAAGAAGATTCACAATGTTTATGAGAATAGGATCGATGCGTTGAGGACTCTTCGG 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTATCAAGAAGATTCACAATGTTTATGAGAATAGGATCGATGCGTTGAGGACTCTTCGG 359
Query 349 GAGCTCAAGCTTCTACGCCATCTTCGACATGAGAATGTCATTGCTTTGAAAGATGTCATG 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGCTCAAGCTTCTACGCCATCTTCGACATGAGAATGTCATTGCTTTGAAAGATGTCATG 419
Query 409 ATGCCAATTCATAAGATGAGCTTCAAGGATGTTTATCTTGTTTATGAGCTCATGGACACT 468
|||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 420 ATGCCAATTCATAAGAGGAGCTTCAAAGATGTGTATCTTGTTTATGAGCTAATGGACACT 479
Query 469 GATCTCCACCAGATTATCAAGTCTTCTCAAGTTCTTAGTAACGATCATTGCCAATACTTC 528
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 480 GATCTCCACCAGATTATCAAGTCTTCTCAAGTTCTAAGTAACGATCACTGCCAATACTTC 539
Query 529 TTGTTCCAGTTGCTTCGAGGGCTCAAGTATATTCATTCAGCCAATATCCTGCACCGAGAT 588
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 TTGTTCCAGTTGCTTCGAGGGCTCAAGTATATTCATTCAGCCAACATCCTGCACCGAGAT 599
Query 589 TTGAAACCTGGTAACCTTCTTGTCAACGCAAACTGCGATTT-AAAGATATGCGATTTTGG 647
|||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 600 TTGAAACCCGGTAACCTTCTTGTCAACGCAAACTGTGATTTGAAA-ATATGCGATTTTGG 658
Query 648 ACTAGCGCGTGCGAGCAACACCAAGGGTCAGTTCATGACTGAATATGTTGTGACTCGTTG 707
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GCTTGCGCGTGCGAGCAACACCAAGGGTCAGTTCATGACTGAATATGTTGTGACTCGTTG 718
Query 708 GTACCGAGC-CCCAGAGCTTCTCCTCTGTTGTGACAACTATGGAACATCCATTGATGTTT 766
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTACCGAGCTCCC-GAGCTTCTCCTCTGTTGTGACAACTATGGAACATCCATTGATGTTT 777
Query 767 GGTCTGTTGGTTGCATTTTCGCCGAGCTTCTTGGTAGGAAACCGATATTCCAAGGAACGG 826
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 778 GGTCTGTTGGTTGCATTTTTGCCGAGCTTCTTGGTAGGAAACCGATATTCCAAGGAACAG 837
Query 827 AATGTCTTAACCAGCTGAAGCTCATTGTCAACATTCTCGGAAGCCAAAGAGAAGAAGATC 886
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct 838 AATGTCTTAACCAGCTTAAACTCATTGTCAACATTCTCGGAAGCCAAAAAGAAGAAGATC 897
Query 887 TTGAGTTCATAGATAACCCGAAAGCTAAAAGATACATTAGATCACTTCCGTACTCACCTG 946
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 898 TTGAGTTCATAGATAACCCGAAAGCTAAAAGATACATTAGATCACTTCCGTACTCACCGG 957
Query 947 GGATGTCTTTATCCAGACTTTACCCGGGCGCTCATGTTTTGGCCATCGACCTTCTGCAGA 1006
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 958 GGATGTCTTTATCCAGGCTTTACCCGGGCGCTCATGTGTTGGCCATCGACCTTCTTCAGA 1017
Query 1007 AAATGCTTGTTTTTGATCCGTCAAAGAGGATTAGTGTCTCTGAAGCACTCCAGCATCCAT 1066
|||||||||||||||| || || ||||||||||||||| |||||||||||||||||||||
Sbjct 1018 AAATGCTTGTTTTTGACCCATCTAAGAGGATTAGTGTCACTGAAGCACTCCAGCATCCAT 1077
Query 1067 ACATGGCGCCTCTATATGACCCGAATGCAAACCCTCCTGCTCAAGTTCCTATCGATCTCG 1126
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1078 ACATGGCGCCTCTATATGACCCGAATGCAAACCCTCCGGCTCAAGTTCCTATCGATCTCG 1137
Query 1127 ATGTAGATGAGGATTTGAGAGAGGAGATGATAAGAGAAATGATGTGGAATGAGATGCTTC 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATGTAGATGAGGATTTGAGAGAGGAGATGATAAGAGAAATGATGTGGAATGAGATGCTTC 1197
Query 1187 ACTACCATCCACAAGCTTCAACCTTAAACACTGAGCTCTGAGCTCAAGTCTTGTTTGTAC 1246
| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1198 ATTATCATCCACAAGCTTCAACCTTAAACACCGAGCTTTGAGCTCAAGTCTTGTTTGTAC 1257
Query 1247 GGGTAATTTACAGAAAACTTCTTCTTCTTATGTCTGATTGTCATCATAGACTCATAGTGT 1306
|||||||||||||||| |||||||| |||||||||||||||||||||| | | |
Sbjct 1258 GGGTAATTTACAGAAATCTTCTTCTACTTATGTCTGATTGTCATCATA-A---A-A---- 1308
Query 1307 ATATAGTCTTGAAAAATAAGATGAAGACTAACTTATAGTTTAAGCGAATAGTGATGCCAT 1366
| ||| | |||||||| |||||| |||||||||||| ||||||||||||
Sbjct 1309 A-ATA------A-------GATGAAGAATAACTTGTAGTTTAAGCGAGTAGTGATGCCAT 1354
Query 1367 GGAAGCTCTGT-TTTATTTAATTACAAGCTTGATGTGTGTCTGTAACATATGTACATAGA 1425
||||||| ||| ||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1355 GGAAGCTGTGTGTTT-TTTAATTACAAGCTTTAAGTGTGTCTGTAACATATGTACATAGA 1413
Query 1426 GAGAG 1430
|||||
Sbjct 1414 GAGAG 1418
Score = 180 bits (97), Expect = 3e-44
Identities = 127/141 (90%), Gaps = 4/141 (3%)
Strand=Plus/Plus
Query 1490 AGCTGTGttttttttttAATTACAAGCTTGATGTGTGTCTGTAACATATGTTCATAGAGA 1549
||||||| | |||||||||||||||||| | ||||||||||||||||||| ||||||||
Sbjct 1358 AGCTGTG--TGTTTTTTAATTACAAGCTTTAAGTGTGTCTGTAACATATGTACATAGAGA 1415
Query 1550 GAGCTGTGTTTCTGTTTCTCTGTTTGTTTGTTGCGTTCTTGCAGAACTTTTAACCCTCTC 1609
||| | | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 GAG-AGAG-CTGTGTTTCTCTGTTTGTTTGTTGCGTTCTTGCAGAACTTTTAACCCTCTC 1473
Query 1610 ATGCAATCCAAGCCTTTTGAT 1630
|||||||||||| |||||||
Sbjct 1474 ATGCAATCCAAGGGTTTTGAT 1494
> Ahg907544 jgi|Araly1|907544|Al_scaffold_0002_625
Length=1131
Score = 1068 bits (578), Expect = 0.0
Identities = 952/1131 (84%), Gaps = 31/1131 (3%)
Strand=Plus/Plus
Query 115 ATGGCGACTTTGGTTGATCCTCCTAATGGGATAAGGAATGAAGGGAAGCATTACTTCTCA 174
||||||||| ||||||||| || ||||| ||||||||| ||||||||||||||||||||
Sbjct 1 ATGGCGACTCCGGTTGATCCACCAAATGGAATAAGGAATCAAGGGAAGCATTACTTCTCA 60
Query 175 ATGTGGCAAACTCTGTTCGAGATCGACACTAAGTACATGCCTATCAAGCCTATTGGTCGT 234
||||||||||| || |||||||| || || || ||| ||||||| || || || || |||
Sbjct 61 ATGTGGCAAACACTTTTCGAGATTGATACGAAATACGTGCCTATTAAACCGATAGGCCGT 120
Query 235 GGAGCTTACGGTGTTGTCTGCTCCTCTGTTAACAGTGACACCAACGAGAAAGTTGCTATC 294
|| || || |||||||| ||||| || |||||||| || | || |||| ||| || |||
Sbjct 121 GGCGCGTATGGTGTTGTTTGCTCTTCGGTTAACAGAGAGAGTAATGAGAGAGTGGCGATC 180
Query 295 AAGAAGATTCACAATGT-TTATGAGAATAGGATCGATGCGTTGAGGACTCTTCGGGAGCT 353
|||||||| |||||||| || ||||||| |||| |||||||||||||||||| |||| ||
Sbjct 181 AAGAAGATCCACAATGTGTT-TGAGAATCGGATTGATGCGTTGAGGACTCTTAGGGAACT 239
Query 354 CAAGCTTCTACGCCATCTTCGACATGAGAATGTCATTGCT-TTGAAAGATGTCATGATGC 412
|||||| |||| |||||||||||||||||||| ||||| || |||||||| ||||||
Sbjct 240 TAAGCTTTTACGTCATCTTCGACATGAGAATGTGGTTGCTCTT-AAAGATGTAATGATGG 298
Query 413 C-AATTCA-TAAGATGA-GCTTCAAGGATGTTTATCTTGTTTATGAGCTCATGGACACTG 469
| || || ||||| || |||| |||||||| |||||||||| |||||| ||||| ||||
Sbjct 299 CTAA--CAATAAGA-GAAGCTTTAAGGATGTGTATCTTGTTTCTGAGCTTATGGATACTG 355
Query 470 ATCTCCACCAGATTATCAAGTCTTCTCAAGTTCTTAGTAACGATCATTGCCAATACTTCT 529
|||| || |||||||||||||| |||||||| || ||||| || ||||| ||||||||||
Sbjct 356 ATCTTCATCAGATTATCAAGTCGTCTCAAGTGCTAAGTAATGACCATTGTCAATACTTCT 415
Query 530 TGTTCCAGTTGCTTCGAGGGCTCAAGTATATTCATTCAGCCAATATCCTGCACCGAGATT 589
|||||||||||||||| ||||||||||||||||||||||| || || || || || |||
Sbjct 416 TGTTCCAGTTGCTTCGTGGGCTCAAGTATATTCATTCAGCAAACATTCTCCATCGGGATC 475
Query 590 TGAAACCTGGTAACCTTCTTGTCAACGCAAACTGCGATTTAAAGATATGCGATTTTGGAC 649
||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||| |
Sbjct 476 TGAAACCCGGTAACCTTCTTGTGAATGCAAACTGCGACTTAAAGATATGCGATTTTGGGC 535
Query 650 TAGCGCGTG-CGAGCAACACCAAGGGTCAGTTCATGACTGAATATGTTGTGACTCGTTGG 708
||||| | | | ||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 536 TAGCGAG-GACAAGCAACACCAAAGGTCAGTTCATGACTGAATATGTTGTGACTAGATGG 594
Query 709 TACCGAGCCCCAGAGCTTCTCCTCTGTTGTGACAACTATGGAACATCCATTGATGTTTGG 768
|||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 595 TACCGAGCACCAGAGCTTCTCCTCTGTTGTGACAACTACGGAACCTCCATTGATGTCTGG 654
Query 769 TCTGTTGGTTGCATTTTCGCCGAGCTTCTTGGTAGGAAACCGATATTCCAAGGAACGGAA 828
|| || |||||||| ||||||||||||||||| || ||||||||||||| ||||| |||
Sbjct 655 TCAGTCGGTTGCATATTCGCCGAGCTTCTTGGAAGAAAACCGATATTCCCTGGAACAGAA 714
Query 829 TGTCTTAACCAGCTGAAGCTCATTGTCAACATTCTCGGAAGCCAAAGAGAAGAAGATCTT 888
||||| |||||| | || ||||| | |||||| | |||||||| ||||| ||||||||
Sbjct 715 TGTCTAAACCAGATTAAACTCATCATTAACATTTTGGGAAGCCAGAGAGAGGAAGATCTC 774
Query 889 GAGTTCATAGATAACCCGAAAGCTAAAAGATACATTAGA-TCACTTCCGTACTCACCTGG 947
||||| ||||||||||||||||| ||||||||||| ||| ||||| || |||||||| ||
Sbjct 775 GAGTTTATAGATAACCCGAAAGCCAAAAGATACAT-AGAATCACTCCCATACTCACC-GG 832
Query 948 GA-TGTCTTTATC-CAGACTTTACCCGGGCGCTCATGTTTTGGCCATCGACCTTCTGCAG 1005
|| | || || || | | |||||||| || || ||| | |||||||| || || |||
Sbjct 833 GAATATCATTCTCTC-GTCTTTACCCAAATGCGCACGTTCTAGCCATCGATCTGCTTCAG 891
Query 1006 AAAATGCTTGTTTTTGATCCGTC-AAAGAGGATTAGTGTCTCTGAAGCACTCCAGCATCC 1064
|||||||| ||| |||| || || ||| |||||||||||| | ||||| || ||||||||
Sbjct 892 AAAATGCTCGTTCTTGACCCTTCGAAA-AGGATTAGTGTCACGGAAGCGCTTCAGCATCC 950
Query 1065 ATACATGGCGCCTCTATATGACCCGAATGCAAACCCTCCTGCTCAAGTTCCTATCGATCT 1124
|||||||||||| |||| |||||||||||||| || ||||||||||||||||| |||||
Sbjct 951 TTACATGGCGCCTTTATACGACCCGAATGCAAATCCACCTGCTCAAGTTCCTATTGATCT 1010
Query 1125 CGATGTAGATGA-G--GA---TTTGAGAG-AGGAGATGATAAGAGAAATGATGTGGAATG 1177
|||||||| || | || |||| ||| || ||||||||||||| | |||||||| |
Sbjct 1011 TGATGTAGACGAAGACGAGGATTTGGGAGCAG-AGATGATAAGAGAGTTAATGTGGAAGG 1069
Query 1178 AGATGCTTCACTACCATCCACAAGCTTCAACCTTAAACA-C--TGAGCTCT 1225
| ||| |||| || |||||| ||||| | ||| | |||| | ||||||||
Sbjct 1070 AAATGATTCATTATCATCCAGAAGCTGCTACCATGAACAACAATGAGCTCT 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61134843225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5