BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G10220.1

Length=804
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg910743 jgi|Araly1|910743|Al_scaffold_0001_997                     479    1e-134


> Ahg910743 jgi|Araly1|910743|Al_scaffold_0001_997
Length=762

 Score =  479 bits (259),  Expect = 1e-134
 Identities = 289/304 (95%), Gaps = 0/304 (0%)
 Strand=Plus/Plus

Query  1    ATGTTGAGTCCGTTTTCGTCACCTAGGAGATCGAGAAGAGGAAACAAAGAAAGCAAGAAT  60
            ||||||||||||||||| ||||| ||||||||||||||||||| |||||||| |||||| 
Sbjct  1    ATGTTGAGTCCGTTTTCCTCACCGAGGAGATCGAGAAGAGGAAGCAAAGAAAACAAGAAC  60

Query  61   CCTTATTCAAATCAAGGACTTGACAAGTTCTCTGCACTTCTATCTGAGCTCGATGAGAAA  120
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  61   CCTTATTCAAATCAAGGACTTGACAAGTTCTCTGCACTTCTATCTGAGCTTGATGAGAAA  120

Query  121  AGACAGAGCATTTACGCAAAGAGGCTTGATCCTGATGGACCGCCTCTTGTTCGGTTTGTC  180
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  121  AGACAGAGCATTTACGCAAAGAGGCTTGATCCTGATGGACCACCTCTTGTTCGGTTTGTC  180

Query  181  TTCACTAGCTCCGGCGAGTGCGTCCCTGTAATGATCAAGACAAAGAGGGCAAGTCAGAAG  240
            || ||||||||||| |||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct  181  TTTACTAGCTCCGGTGAGTGCGTCCCTGTCATGATCAAGACAAAGAAGGCAGGTCAGAAG  240

Query  241  AAGGATGTTCTAGATGATTTCAAGGTCAAGAAGAAGGACGTTCTAGATGATTTCAAGGTC  300
            |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct  241  AAGGATGTTCAAGATGATTTCAAGGTCAAGAAGAAGGATGTTCTAGATGATTTCAAGTTC  300

Query  301  AAGA  304
            ||||
Sbjct  301  AAGA  304


 Score = 63.9 bits (34),  Expect = 2e-09
 Identities = 41/44 (93%), Gaps = 2/44 (5%)
 Strand=Plus/Plus

Query  230  CAA-GTC-AGAAGAAGGATGTTCTAGATGATTTCAAGGTCAAGA  271
            ||| ||| ||||||||||||||||||||||||||||| ||||||
Sbjct  261  CAAGGTCAAGAAGAAGGATGTTCTAGATGATTTCAAGTTCAAGA  304



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29697752343


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5