BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10230.1
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471136 jgi|Araly1|471136|fgenesh2_kg.1__1090__AT1G10230.1 760 0.0
Ahg484224 jgi|Araly1|484224|fgenesh2_kg.5__216__AT2G03190.1 239 3e-62
Ahg936100 jgi|Araly1|936100|scaffold_500291.1 235 3e-61
> Ahg471136 jgi|Araly1|471136|fgenesh2_kg.1__1090__AT1G10230.1
Length=632
Score = 760 bits (411), Expect = 0.0
Identities = 485/521 (93%), Gaps = 3/521 (1%)
Strand=Plus/Plus
Query 57 TCCGCCGGCGAATCATCAGAGATCGAGGAAGCGGTTGCGAGTCTAACCATGTCTTCTAAC 116
|||| |||| |||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1 TCCGACGGCAAATCTTCCGAGATAGAGGAAGCGGTGGCGAGTCTAACCATGTCTTCTAAC 60
Query 117 AAGATTTTGTTGACGAGTTCCGATGGCGAGTCTTTCGAGATCGACGAAGCGGTGGCGCGT 176
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AAGATTTTGTTGACGAGTTCCGATGGCGAGTCATTCGAGATCGACGAAGCGGTGGCGCGT 120
Query 177 AAGTTTCTGATCATAGTGCACATGATGGAGGATAACTGCGCCGGTGAAGCAATTCCGCTT 236
||||||| |||||||| ||||||||| || ||| |||||||||| ||||||||||| ||
Sbjct 121 AAGTTTCAGATCATAGCGCACATGATCGAAGATGACTGCGCCGGCAAAGCAATTCCGATT 180
Query 237 GAAAATGTCACCGGGGATATCCTCTCCAAGATAATCGAGTACGCGAAGATGCACGTCAAT 296
|| || |||||||| ||||||||||| |||||||||||||||||||||| ||||||| |
Sbjct 181 GACAACGTCACCGGAGATATCCTCTCTAAGATAATCGAGTACGCGAAGAAGCACGTCGTT 240
Query 297 GAACCTAGTGAAGAAGACGAAGACGAGGAGGCGAAGAAGAATCTAGACTCGTGGGACGCT 356
|||||| | | ||||||||||||||||||||||||||||| || || || |||||||||
Sbjct 241 GAACCT-G--ATGAAGACGAAGACGAGGAGGCGAAGAAGAAGCTGGATTCATGGGACGCT 297
Query 357 AAGTTCATGGAAAAGCTAGATCTGGAGACCATCTTCAAAATCATTCTCGCTGCCAACTAC 416
|||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 298 AAGTTCGTGGAAAAGCTAGATCTGGAGACGATTTTCAAAATCATTCTCGCTGCCAACTAC 357
Query 417 CTAAACTTCGAAGGACTTCTCGGTTTCGCTAGCCAGACGGTTGCTGATTACATCAAGGAC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTAAACTTCGAAGGACTTCTCGGTTTCGCTAGCCAGACGGTTGCTGATTACATCAAGGAC 417
Query 477 AAAACACCAGAGGAAGTACGAGAGATTTTCAACATCGAGAACGATTTCACGCCTGAAGAA 536
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AAAACACCAGAGGAAGTTCGAGAGATTTTCAACATCGAGAACGATTTCACGCCTGAAGAA 477
Query 537 GAGGAAGAGATTCGCAAGGAGAATGCTTGGACTTTTAATGA 577
|||||||||||||| |||||||| |||||||||||||||||
Sbjct 478 GAGGAAGAGATTCGTAAGGAGAACGCTTGGACTTTTAATGA 518
> Ahg484224 jgi|Araly1|484224|fgenesh2_kg.5__216__AT2G03190.1
Length=507
Score = 239 bits (129), Expect = 3e-62
Identities = 383/500 (77%), Gaps = 40/500 (8%)
Strand=Plus/Plus
Query 105 ATGTCTTCTAACAAGATTTTGTTGACGAGTTCCGATGGCGAGTCTTTCGAGATCGACGAA 164
|||||||| ||||||||| ||||||| || ||||||| || ||||||||| | ||||||
Sbjct 1 ATGTCTTCGAACAAGATTGTGTTGACTAGCTCCGATGATGAATCTTTCGAGGTTGACGAA 60
Query 165 GCGGTGGCGCGTAAGTTTCTGATCATAGTGCACATGATGGAGGATAACTGCGCCGGTGAA 224
|||||||| ||||| | | |||||||| ||||||||| || || ||||||||| | ||
Sbjct 61 GCGGTGGCTCGTAAACTGCAGATCATAGCGCACATGATTGATGACGACTGCGCCGATAAA 120
Query 225 GCAATTCCGCTTGAAAATGTCACCGGGGATATCCTCTCCAAGATAATCGAGTA-CGCGAA 283
||||| |||||| |||| ||||| || | |||||| | | | |||||||| || ||
Sbjct 121 GCAATCCCGCTTCAAAACGTCACTGGAAAGATCCTCGCTGTGGTTATCGAGTATTGC-AA 179
Query 284 GATGCACG-TCA--A---TGA--A-CCT-A----G-TGAAG-AA-GA-CG---A---AGA 319
|| |||| | | | ||| | | | | ||||| || | || | |||
Sbjct 180 GAAACACGTTAATGATGTTGATGATAGTGATGTTGTTGAAGAAATAAGCGAAAATGTAGA 239
Query 320 CGAGGAGGCGAAG-AAGA-ATC-TAGACTCGTGGGACGCTA-AGTTCATGGAAAAGCTA- 374
|||||| || ||| |||| || | |||| |||||||| | ||||||| | |||| ||
Sbjct 240 CGAGGAAGCCAAGAAAGAGCTCGT-GACT--TGGGACGC-AGAGTTCAT-G-AAAGATAT 293
Query 375 -GATCTGGAGACCATCTTCAAAATCATTCTCGCTGCCAACTACCTAAACTTCGAAGGACT 433
||| |||| || || ||| || || |||||||||| ||||| || ||| || || | ||
Sbjct 294 TGATATGGAAACAATGTTCCAACTCCTTCTCGCTGCTAACTATCTCAACGTCAAAAGTCT 353
Query 434 TCTCGGTTTCGCTAGCCAGACGGTTGCTGATTACATCAAGGACAAAACACCAGAGGAAGT 493
||| | | || |||||||||| |||| ||||||||||| || || || ||| |||||||
Sbjct 354 TCTTGATCTCACTAGCCAGACCATTGCAGATTACATCAAAGATAAGACGCCACAGGAAGT 413
Query 494 ACGAGAGAT-TTTCAACATCGAGAACGATTTCACGCCTGAAGAAGAGGAAGAGATTCGCA 552
||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TCGAGAAATCTTT-AACATCGAGAACGATTTCACGCCTGAAGAAGAGGAAGAGATTCGCA 472
Query 553 AGGAGAATGCTTGGACTTTT 572
||||||| | ||| |||||
Sbjct 473 AGGAGAACGAATGGGCTTTT 492
> Ahg936100 jgi|Araly1|936100|scaffold_500291.1
Length=640
Score = 235 bits (127), Expect = 3e-61
Identities = 229/276 (83%), Gaps = 15/276 (5%)
Strand=Plus/Plus
Query 306 GAAGAAGACGAAG-A-C-GAGGAGGCGAAGAAGAATCTAGACT-CGTGGGACGCTAAGTT 361
|||||||| || | | | ||||||||||||||||| || || | | |||||||| |||||
Sbjct 315 GAAGAAGATGATGCATCTGAGGAGGCGAAGAAGAAGCTCGA-TGCTTGGGACGCAAAGTT 373
Query 362 CATGGAA-AAGCT-AGAT-CTGGAGACCATCTTCAAAATCATTCTCGCTGCCAACTACCT 418
||| ||| | || | || || ||||| ||||||| |||||||||||||| ||||| ||
Sbjct 374 CAT-GAAGGATCTCA-ATACT-GAGACGATCTTCAGCATCATTCTCGCTGCTAACTATCT 430
Query 419 AAACTTCGAAGGACTTCTCGGTTTCGCTAGCCAGACGGTTGCTGATTACATCAAGGACAA 478
||| || |||| || || | | || |||||||||| ||||| ||||||||||| || |
Sbjct 431 CAACGTCAAAGGTCTACTTGATCTCACTAGCCAGACCGTTGCAGATTACATCAAAGATAT 490
Query 479 AACACCAGAGGAAGTACGAGAGA-T-TTTCAACATCGAGAACGATTTCACGCCTGAAGAA 536
|| ||||||||||| ||||| | | ||| ||||||||||| ||||||||||||||||||
Sbjct 491 GACGCCAGAGGAAGTTCGAGA-ACTCTTT-AACATCGAGAATGATTTCACGCCTGAAGAA 548
Query 537 GAGGAAGAGATTCGCAAGGAGAATGCTTGGACTTTT 572
||||||||||||||||||||||| ||||||||||||
Sbjct 549 GAGGAAGAGATTCGCAAGGAGAACGCTTGGACTTTT 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29125908588
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5