BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10240.1
Length=2295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919766 jgi|Araly1|919766|scaffold_101047.1 756 0.0
Ahg919799 jgi|Araly1|919799|scaffold_101080.1 422 7e-117
> Ahg919766 jgi|Araly1|919766|scaffold_101047.1
Length=2900
Score = 756 bits (409), Expect = 0.0
Identities = 514/563 (91%), Gaps = 14/563 (2%)
Strand=Plus/Plus
Query 1585 AAACATCAGCCTAAAAACTGGCGCCCCCATGGAATCTC-ACGCAGCCTCGGTGCTCACTC 1643
|||||||||||| |||||||| |||||||||||||| | |||||||| || |||||||
Sbjct 2148 AAACATCAGCCT-AAAACTGGTTTCCCCATGGAATCTCTA-GCAGCCTCAGTCCTCACTC 2205
Query 1644 CTTTTGCATTCTCCAAGCTCCAAGAACAGCTTGTGCTTGCTGCTCACTACGCATCGTTCC 1703
||| || |||||||| ||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct 2206 CTTCCGCTTTCTCCAATCTCCAAGCACAGCTTGTGCTTGCAGCTCTCTACGCATCGTTCC 2265
Query 1704 AGATGGATGAGGGGTATCTCGTGAGGCACCACACAAAACTCGA-TGGAGGAAGAAAAGTG 1762
|||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 2266 AGATGGATGACTGGTATCTCGTGAGGCACCACACAAAACTC-AGTGGAGGAAGAAAAGTG 2324
Query 1763 TATTGGGTTCCTCAAGAAGGCATCATAAGCTGCAGTTGCCAACTGTTTGAGTTCTCTGGG 1822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2325 TATTGGGTTCCTCAAGAAGGCATCATAAGCTGCAGTTGCCAACTGTTTGAGTTCTCTGGG 2384
Query 1823 TTTCTCTGCAGGCACGCACTCCGTGTTCTCTCCACAGGAAACTGTTTTCAGGTCCCTGAT 1882
|||||||||||||||||||||| ||||||||| || ||||||| ||||| |||||| ||
Sbjct 2385 TTTCTCTGCAGGCACGCACTCCATGTTCTCTCTACCGGAAACTATTTTCCGGTCCCAGAC 2444
Query 1883 AGGTATCTTCCACTTAGGTGGCGCAGGATCAGCACGTCGTTTAGCAAGACGTTCAGAAGT 1942
|| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2445 AGATATCTTCCTCTGAGGTGGCGCAGGATCAGCACGTCGTTTAGCAAGACGTTCAGAAGT 2504
Query 1943 AACGCTGAGGATCATGGAGAGAGAGTTCAGCTTCTGCAGAATCTGGTTTCGACTCTGGTC 2002
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2505 AACGCTGAGGATCATGGAGAGAGAGTTCAGCTTCTGCAAAATCTGGTTTCGACTCTGGTG 2564
Query 2003 TCAGAATCGGCTAAATCGAAGGAGAGGCTAGATATTGCAACTGAGCAAACCTCCATCCTC 2062
|| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2565 TCCGAACCGTCTAAATCGAAGGAGAGGCTAGATATTGCAACTGAGCAAACCTCCATCCTC 2624
Query 2063 TTATCCCGTATCAGAGAGCAGC--CTGTCT--C-CT-CACTTGCTATCAGAGACATTTCT 2116
|||||||| ||||||||||||| | | || | || |||||||| || |||||||||||
Sbjct 2625 TTATCCCGCATCAGAGAGCAGCGGCAGCCTATCTCTTCACTTGCTCTCCGAGACATTTCT 2684
Query 2117 TCTTCTGTGCAGAGGAATTTTTG 2139
|| |||||||||||||||||
Sbjct 2685 ACT---GTGCAGAGGAATTTTTG 2704
Score = 597 bits (323), Expect = 1e-169
Identities = 372/396 (94%), Gaps = 2/396 (1%)
Strand=Plus/Plus
Query 680 GAGCTTGAGAAGTGTGTCGAGCCAGGATTTTTACCATTCACCGAAAAGGATGTCAGGAAT 739
|||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 1524 GAGCTTGAGAAGTGTGTCGAGCTAGGCTTTTTACCATTCACTGAAAAGGATGTCAGGAAT 1583
Query 740 TTGCTTCAGTCATTCAAGAAACTCGATCCTGAGGATGAGAACATTGATTTCCTGAGGATG 799
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 ATGCTTCAGTCCTTCAAGAAACTCGATCCTGAGGATGAGAACATTGATTTCCTGAGGATG 1643
Query 800 TGCCAAAGCATAAAGGAGAAAGACCCTAACTTTAAGTTCGAGTTTACTTTGGATGCAAAT 859
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1644 TGCCAAAGCATAAAGGAGAAAGACCCTAACTTTAAGTTTGAGTTTACGTTGGATGCAAAT 1703
Query 860 GATAAGTTAGAAAATATTGCCTGGTCGTATGCTTCTTCCATTCAGTCATATG-AACTCTT 918
|||||| |||||| |||||||||||| ||||| ||||||||||||||||||| || ||||
Sbjct 1704 GATAAGCTAGAAATTATTGCCTGGTCATATGCATCTTCCATTCAGTCATATGGAA-TCTT 1762
Query 919 TGGAGATGCTGTTGTTTTCGATACAACACATCGCTTAAGTGCTGTTGAGATGCCACTTGG 978
|||||||||||| |||||||||||||||||| |||||||||| ||||||||||| |||||
Sbjct 1763 TGGAGATGCTGTAGTTTTCGATACAACACATTGCTTAAGTGCAGTTGAGATGCCGCTTGG 1822
Query 979 AATATGGGTTGGAGTTAATAACTATGGTGTCCCTTGCTTCTTCGGTTGTGTGCTTCTACG 1038
|||||||||| ||||||||||||||||||| | |||||||||| ||||||| |||||| |
Sbjct 1823 AATATGGGTTCGAGTTAATAACTATGGTGTGCATTGCTTCTTCTGTTGTGTACTTCTATG 1882
Query 1039 GGATGAAAATTTGAGATCGTGGTCATGGGCACTACA 1074
|||||||||||| |||||||||||||||||||||||
Sbjct 1883 GGATGAAAATTTTAGATCGTGGTCATGGGCACTACA 1918
Score = 248 bits (134), Expect = 1e-64
Identities = 193/219 (88%), Gaps = 14/219 (6%)
Strand=Plus/Plus
Query 1301 GAGTTTGAGTTGGGTTGG-AGAGACATGGTGAACTCTTTTGGACTGCACACAAACAGACA 1359
||||| |||||||||||| ||||||||||||||||| |||||||| | | ||| | |
Sbjct 1940 GAGTTCGAGTTGGGTTGGAAGAGACATGGTGAACTCCTTTGGACT---C-C--ACATA-A 1992
Query 1360 CATCAACAACTTGTATGCCTCACGTTCCTTGTGGTCTTTACCATACCTGAGAAGCCATTT 1419
| | | ||| |||||| | ||| ||||||||| ||||||||||||||||||| ||||||
Sbjct 1993 -A-C-A-AAC-TGTATGTCGCACATTCCTTGTGTTCTTTACCATACCTGAGAAACCATTT 2047
Query 1420 TCTAGCTGGAATGACTTTGACTGGCCGATCCAAAGCC-ATTAACGCCTTTATTCAGAGGT 1478
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 2048 TTTAGCTGGAATGACTTTGACTGGCCGATCCAAAGCCAATCAACGCCTTTATTCAGAGGT 2107
Query 1479 TCTTGAGCGCACAAACCCGGCTAGCTCACTTTGTAGAAC 1517
||||||||||||||||||||||| |||| ||||||||||
Sbjct 2108 TCTTGAGCGCACAAACCCGGCTACCTCAATTTGTAGAAC 2146
Score = 135 bits (73), Expect = 1e-30
Identities = 82/86 (95%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 328 TCACAGGACAGAAGGAAAAGACGGAGTTGGC-AAAGGACTTACTAGGCGCTACTTTGTTT 386
||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 1426 TCACAGGACAGAAAGAAAAGACGGAGAT-GCAAAAGGACTTACTAGGCGCTACTTTGTTT 1484
Query 387 GTCACCGTGCTGGTAACACACCTATC 412
||||||||||||||||||||||||||
Sbjct 1485 GTCACCGTGCTGGTAACACACCTATC 1510
> Ahg919799 jgi|Araly1|919799|scaffold_101080.1
Length=384
Score = 422 bits (228), Expect = 7e-117
Identities = 256/270 (95%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 1252 CGACTGGAAAGCTGAATTTTATCGCCTCTACCATCTGGAATCCGTTGAGGAGTTTGAGTT 1311
|||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||||
Sbjct 47 CGACTGGAAAGCTGAATTCCACCGCCTCTACCATCTGGAATCCGTGGAGGAGTTCGAGTT 106
Query 1312 GGGTTGGAGAGACATGGTGAACTCTTTTGGACTGCACACAAACAGACACATCAACAACTT 1371
|||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 107 GGGTTGGAGAGATATGGTGAACTCTTTTGGACTGCACACAAGCAGACACATAAACAATTT 166
Query 1372 GTATGCCTCACGTTCCTTGTGGTCTTTACCATACCTGAGAAGCCATTTTCTAGCTGGAAT 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 GTATGCCTCACGTTCCTTGTGGTCTTTACCATACCTGAGAAGCCATTTTCTAGCTGGAAT 226
Query 1432 GACTTTGACTGGCCGATCCAAAGCCATTAACGCCTTTATTCAGAGGTTCTTGAGCGCACA 1491
|||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 227 GACTTTGACTGGCCGATCGAAAGCCATTAACGCCTTTATTCAAAGGTTGTTGAGCGCACA 286
Query 1492 AACCCGGCTAGCTCACTTTGTAGAACAAGT 1521
|| || ||||||||||||||||||||||||
Sbjct 287 AATCCTGCTAGCTCACTTTGTAGAACAAGT 316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86426765905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5