BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10280.1
Length=1897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910750 jgi|Araly1|910750|Al_scaffold_0001_1004 2100 0.0
> Ahg910750 jgi|Araly1|910750|Al_scaffold_0001_1004
Length=1239
Score = 2100 bits (1137), Expect = 0.0
Identities = 1205/1239 (97%), Gaps = 0/1239 (0%)
Strand=Plus/Plus
Query 357 ATGGCGAGAGGAGGGAAAGAGGAAGGAGAAAAACACATAGGGTTACTAAAGCTGGCGCAA 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCGAGAGGAGGGAAAGAGGAAGGAGAAAAACACATAGGGTTACTAAAGCTGGCTCAA 60
Query 417 ACGCTGTCGTTTTTGCTAATTTTCATGGCTGGAATCATCATCGGTCTCGCCGCAAGTTCT 476
|||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct 61 ACGCTGTCGTTTTTGCTAATATTCATGGCCGGAATCATCATCGGCCTCGCCGCTAGTTCT 120
Query 477 CACATCGATCGCTACTTCAATTCTTTGCCGAGGATGTTCTCATCAACCACTAACCTCCAA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CACATCGATCGCTACTTCAATTCTTTGCCGAGGATGTTCTCATCAACCACTAATCTCCAA 180
Query 537 TCGATTCCTTTTTCGACTCCTGATTACTCCAATTGCACAATCATCCACCGAGACTGCACA 596
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 181 TCGATTCCGTTTTCGACTCCTGATTACTCCAATTGCACAATCATCCACCGGGATTGCACA 240
Query 597 GGTAACGACGACAACGAGAGCGACGACGGAGGAGTCAAGGCGGAGAAACCAAAGGTTCGA 656
||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 241 GGTAACGACGAGAACGAGAGCGACGAAGGAGGAGTCAAGGCGGAGAAACCAAAGGATCGA 300
Query 657 GATTGTTGGAGCATTGATGGGTTTGTTCGGCCAGAGAATCTGAGTCATGGAATGACTGAT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GATTGTTGGAGCATTGATGGGTTTGTTCGGCCAGAGAATCTGAGTCATGGAATGAGTGAT 360
Query 717 GATGAGTTGTTCTGGAGAGCTTCGATGGTTCCGGTGAAGGAAGAGTATCCGTACGATAGG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 GATGAGTTGTTCTGGAGAGCTTCGATGGTTCCGGTGAAGGAAGAGTATCCGTATGATAGG 420
Query 777 GTTCCGAAAGTGGCGTTTATGTTTCTGACGAGAGGGCCTTTACCTATGCTTCCGCTTTGG 836
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GTTCCGAAAGTGGCGTTTATGTTTCTCACGAGAGGGCCTTTACCTATGCTTCCGCTTTGG 480
Query 837 GAGAAGTTTTTTAAAGGCAATGAAAAGTACTTGTCCGTTTATGTTCATACGCCTCCTGGA 896
|||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 481 GAGAAGTTTTTTAAAGGCAATGGCAAGTACTTATCGGTTTATGTTCATACGCCTCCTGGA 540
Query 897 TACGACATGAATGTCTCTCGTGATTCTCCCTTTTACGACCGCCAGATCCCCAGCCAGAGA 956
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 541 TACGACATGAATGTCTCTCGTGATTCTCCGTTTTACGACCGGCAGATCCCGAGCCAGAGA 600
Query 957 GTTGAATGGGGATCCCCACTATTGACAGACGCAGAGAAGCGTCTTCTAGCCAATGCATTG 1016
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 601 GTTGAATGGGGATCCCCACTATTGACAGATGCAGAGAAGCGTCTTCTAGCCAACGCATTG 660
Query 1017 CTGGACTTCTCAAATGAGCGTTTTGTTCTTCTCTCAGAGAGCTGTGTCCCAGTTTACAAC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTGGACTTCTCAAATGAGCGTTTTGTTCTTCTCTCAGAGAGCTGTGTCCCAGTTTACAAC 720
Query 1077 TTCTCAACTGTCTACACTTACCTAATAAACTCTGCTTACAGTTTTGTGGACTCTTATGAT 1136
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTCTCCACTGTCTACACTTACCTAATAAACTCTGCTTACAGTTTTGTGGACTCTTATGAT 780
Query 1137 GAGCCAACACGTTATGGCCGTGGCCGTTATAGCCGCAAGATGCTCCCGGATATCAAACTC 1196
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 781 GAGCCAACACGTTATGGCCGCGGCCGTTACAGCCGCAAGATGCTCCCGGATATCAAACTC 840
Query 1197 CATCACTGGCGCAAAGGGTCTCAGTGGTTTGAAGTAAACCGTAAAATCGCCATCTACATC 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CATCACTGGCGCAAAGGGTCTCAGTGGTTTGAAGTAAACCGTAAAATCGCCATCTACATC 900
Query 1257 ATCTCAGACTCGAAATACTACTCATTGTTCAAACAATTCTGCAGACCAGCTTGTTACCCA 1316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATCTCAGACTCGAAATACTACTCATTGTTCAAACAATTCTGCAGACCAGCTTGTTACCCG 960
Query 1317 GACGAGCATTACATCCCTACTTTCTTGAACATGTTTCACGGTTCAATGAACGCAAATAGA 1376
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 961 GACGAGCATTACATCCCCACTTTCTTGAACATGTTTCACGGCTCAATGAACGCAAATAGA 1020
Query 1377 AGCGTGACATGGGTTGATTGGTCCATAGGCGGTCCCCATCCAGCTACATATGCTGCAGCT 1436
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1021 AGCGTGACATGGGTTGATTGGTCCATAGGCGGTCCGCATCCAGCTACATATGCTGCAGTT 1080
Query 1437 AATATCACAGAAGGGTTTCTCCAATCTATAAGGAAAAACGAGACGGATTGTCTTTACAAT 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1081 AATATCACAGAAGGGTTTCTCCAATCTATAAGGAAAAACGAGACGGATTGTCTCTACAAT 1140
Query 1497 GAAGAGCCAACTTCGTTATGCTTCCTTTTTGCTCGCAAGTTCTCTCCTTCTGCCTTAGCT 1556
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1141 GAAGAGCCAACTTCGTTATGCTTCCTTTTTGCTCGGAAGTTCTCTCCTTCTGCCTTAGCT 1200
Query 1557 CCTCTTATGAATTTGAGCTCTACTGTCCTGGGGTTTTGA 1595
|||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CCTCTTATGAATTTGAGCTCTACTGTCCTGGGGTTTTGA 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71266848395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5