BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10290.1
Length=3304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471140 jgi|Araly1|471140|fgenesh2_kg.1__1094__AT1G10290.1 5400 0.0
Ahg475352 jgi|Araly1|475352|fgenesh2_kg.2__482__AT1G59610.1 3094 0.0
Ahg347252 jgi|Araly1|347252|fgenesh1_pg.C_scaffold_5000644 182 2e-44
Ahg894800 jgi|Araly1|894800|Al_scaffold_0006_2796 171 4e-41
Ahg946011 jgi|Araly1|946011|scaffold_702240.1 167 5e-40
Ahg486503 jgi|Araly1|486503|fgenesh2_kg.5__2495__AT3G60310.1 82.4 2e-14
> Ahg471140 jgi|Araly1|471140|fgenesh2_kg.1__1094__AT1G10290.1
Length=3225
Score = 5400 bits (2924), Expect = 0.0
Identities = 3086/3164 (98%), Gaps = 11/3164 (0%)
Strand=Plus/Plus
Query 123 CAGATCTAATCGAGTGGCTTCCTTCTTCCTCCAGATCTCTTCACTTTGAATCGGTTACTC 182
|||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 68 CAGATCTAATCGCGTGGCTTCCGTCTTCCTCCAGATCTCTTTACTTTGAATCGGTTACTC 127
Query 183 GATCTCGATTCGC-GGAGGGCTTTTGCTAGTCGCGATGGAGGCGATCGATGAGTTGTCTC 241
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 GATCTCGATTCGCGGGA-GGCTTTTGCTAGTCGCGATGGAGGCGATCGATGAGTTGTCTC 186
Query 242 AGCTCTCAGATTCGATGAAGCAGGCGGCGTCTCTCCTCGCCGACGAAGATCCCGACGAAA 301
||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |
Sbjct 187 AGCTCTCAGATTCGATGAAACAGGCGGCGTCGCTTCTCGCCGACGAAGATCCCGACGAGA 246
Query 302 CCTCTTCTTCCAAGCGCCCTGCCACTTTCCTCAACGTCGTTGCCTTGGGAAATGTGGGAG 361
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 247 CCTCTTCTTCCAAGCGCCCTGCTACTTTCCTCAACGTCGTTGCCTTAGGAAATGTGGGAG 306
Query 362 CTGGAAAGTCTGCAGTTCTAAACAGTCTAATTGGGCATCCAGTGCTGCCGACGGGTGAGA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CTGGAAAGTCTGCAGTTCTAAACAGTCTAATTGGGCATCCAGTGCTGCCGACGGGTGAGA 366
Query 422 ATGGTGCTACACGAGCTCCTATAATAATTGAATTGAGCAGGGAGAGTTCTTTGAGCAGCA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ATGGTGCTACACGAGCTCCTATAATAATTGAATTGAGCAGGGAGAGTTCTTTGAGCAGCA 426
Query 482 AGGCAATTATCTTGCAAATCGACAATAAATCTCAACAAGTTTCTGCAAGTGCTTTGAGAC 541
|||| |||||||||||||| |||||||||||||| |||||||||||||||||| ||||||
Sbjct 427 AGGCGATTATCTTGCAAATTGACAATAAATCTCAGCAAGTTTCTGCAAGTGCTCTGAGAC 486
Query 542 ATTCTCTGCAAGATAGACTTAGCAAAGGAGCCTCAGGGAAGAATCGTGATGAAATAAACT 601
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 487 ATTCTCTACAAGATAGACTTAGCAAAGGAGCCTCAGGGAAGAACCGTGATGAAATAAACT 546
Query 602 TAAAACTTCGTACCAGCACAGCTCCACCATTGAAATTAGTTGATCTGCCTGGACTGGACC 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TAAAACTTCGTACCAGCACAGCTCCACCATTGAAATTAGTTGATCTGCCTGGACTGGACC 606
Query 662 AGAGAATTGTGGACGAGTCAATGATTGCTGAATACGCGCAACACAATGATGCCATACTGC 721
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 AGAGGATTGTGGACGAGTCAATGATTGCTGAATACGCGCAACACAATGATGCCATACTGC 666
Query 722 TGGTTATAGTGCCTGCTAGCCAGGCATCTGAAATTTCATCATCCCGAGCCCTGAAGATTG 781
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 667 TGGTTATAGTGCCTGCTAGCCAGGCATCTGAAATTTCATCATCCCGAGCCCTTAAGATTG 726
Query 782 CAAAGGAGTATGATCCAGAGAGTACTAGGACAATAGGCATTATTGGAAAAATTGACCAGG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 CAAAGGAGTATGATCCAGAGAGTACTAGGACAATAGGCATTATTGGAAAAATTGACCAGG 786
Query 842 CAGCAGAGAACTCGAAAGCCCTTGCAGCTGTTCAGGCTCTTCTTTCAAATCAAGGACCTC 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 CAGCAGAGAACTCGAAAGCCCTTGCAGCTGTTCAGGCTCTTCTTTCAAATCAAGGACCTC 846
Query 902 CAAAAACAACTGACATTCCATGGGTTGCTGTTATTGGCCAATCCGTTTCAATTGCGTCAG 961
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 847 CAAAAACAACTGACATTCCATGGGTTGCTATTATTGGCCAGTCCGTTTCAATTGCGTCAG 906
Query 962 CACAGTCTGGAAGTGGTGAGAACTCCTTAGAAACTGCTTGGCGTGCTGAGAGTGAAAGTC 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CACAGTCTGGAAGTGGTGAGAACTCCTTAGAAACTGCTTGGCGTGCTGAGAGTGAAAGTC 966
Query 1022 TTAAGTCCATTTTGACTGGGGCTCCACAAAGCAAGCTTGGCAGAATTGCGTTGGTGGATA 1081
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
Sbjct 967 TTAAGTCCATTTTGACTGGGGCTCCACAAACCAAGCTTGGCAGAATCGCGTTGGTGGACA 1026
Query 1082 CCCTTGCTAGCCAGATTCGTAGCAGAATGAAGCTCAGGCTTCCAAGTGTCCTGTCTGGGC 1141
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1027 CCCTTGCTAGCCAGATTCGTAGCAGAATGAAGCTCAGGCTTCCAAGTGTCTTGTCTGGGC 1086
Query 1142 TCCAGGGTAAGTCTCAAATAGTGCAGGATGAGCTAGCGAGGCTTGGTGAACAACTAGTTA 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1087 TCCAGGGTAAGTCTCAAATAGTGCAGGATGAGCTAGCGAGGCTTGGTGAACAATTAGTTA 1146
Query 1202 ACAGTGCTGAAGGTACAAGGGCTATAGCTTTGGAGCTTTGCCGTGAGTTTGAAGACAAGT 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 ACAGTGCTGAAGGTACAAGGGCTATAGCTTTGGAGCTTTGCCGTGAGTTTGAAGACAAGT 1206
Query 1262 TTCTTCTGCACTTGGCTGGTGGTGAAGGAAGTGGTTGGAAAGTTGTTGCAAGTTTTGAAG 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 TTCTTCTGCACTTGGCTGGTGGTGAAGGAAGTGGTTGGAAAGTTGTTGCAAGTTTTGAAG 1266
Query 1322 GAAATTTCCCCAACCGTATCAAGCAGCTTCCATTGGATAGACATTTTGACCTGAACAATG 1381
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1267 GAAATTTCCCCAACCGTATCAAGCAGCTTCCATTGGATAGACATTTTGACTTGAACAATG 1326
Query 1382 TTAAAAGGGTTGTTTTGGAGGCAGATGGTTATCAACCTTATCTTATATCTCCAGAGAAAG 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 TTAAAAGGGTTGTTTTGGAGGCAGATGGTTATCAACCTTATCTTATATCTCCAGAGAAAG 1386
Query 1442 GGTTGAGATCGTTGATAAAGATTGTCCTTGAGTTGGCTAAAGACCCGGCACGCCTTTGTG 1501
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1387 GGTTGAGATCGTTGATAAAGATTGTCCTTGAGTTGGCTAAAGACCCGGCACGTCTTTGTG 1446
Query 1502 TTGATGAGGTTCACCGAGTTCTTGTTGACATAGTTTCAGCTTCTGCAAATGCTACACCTG 1561
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1447 TTGATGAGGTTCACCGAGTTCTTGTTGACATAGTTTCGGCCTCTGCAAATGCTACACCTG 1506
Query 1562 GACTTGGGAGATATCCTCCTTTCAAGCGAGAGGTTGTAGCTATAGCAAGTGCAGCACTTG 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 GACTTGGGAGATATCCTCCTTTCAAGCGAGAGGTTGTAGCTATAGCAAGTGCAGCACTTG 1566
Query 1622 ATGGTTTCAAGAATGAAGCCAAGAAAATGGTGGTTGCACTAGTTGATATGGAACGCGCTT 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 ATGGTTTCAAGAATGAAGCCAAGAAAATGGTGGTTGCACTAGTTGATATGGAACGCGCTT 1626
Query 1682 TTGTACCACCTCAACATTTTATCCGTCTTGTGCAAAGGAGAATGGAAAGACAACGTCGCG 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627 TTGTACCACCTCAACATTTTATCCGTCTTGTGCAAAGGAGAATGGAAAGACAACGTCGCG 1686
Query 1742 AGGAAGAGCTGAAAGGGCGATCTTCTAAGAAGGGACAAGATGCAGAGCAGTCCCTTTTAA 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1687 AGGAAGAGCTGAAAGGGCGATCTTCTAAGAAGGGACAAGATGCAGAGCAGTCCCTTTTAA 1746
Query 1802 GCAGGGCTACTAGTCCTCAGCCAGATGGGCCAACAGCTGGTGGTAGCTTAAAATCAATGA 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747 GCAGGGCTACTAGTCCTCAGCCAGATGGGCCAACAGCTGGTGGTAGCTTAAAATCAATGA 1806
Query 1862 AAGACAAACCTAGTCCGCAAGATAAAGAGACGCCGGAGGTCTCTGGTCTGAAAACTGCTG 1921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1807 AAGACAAACCTAGTCCGCAAGATAAAGAGACGCCGGAGGTCTCTGGTCTGAAAACTGCTG 1866
Query 1922 GACCTGAGGGGGAGATAACAGCAGGGTACTTAATGAAGAAAAGTGCAAAAACAAATGGGT 1981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1867 GACCTGAGGGGGAGATAACAGCAGGGTACTTAATGAAGAAAAGTGCAAAAACAAATGGGT 1926
Query 1982 GGAGTAGGCGATGGTTTGTTCTGAATGAGAAAACTGGAAAGCTTGGCTATACCAAAAAGC 2041
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1927 GGAGTAGGCGATGGTTTGTTCTGAATGAGAAAACTGGAAAGCTCGGCTATACCAAAAAGC 1986
Query 2042 AAGAAGAAAGAAACTTTCGGGGCACGATAACTTTGGAGGAATGCACTATTGAAGAAATCC 2101
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1987 AAGAAGAAAGAAACTTCCGGGGCACTATAACTTTGGAGGAATGCACTATTGAAGAAATTC 2046
Query 2102 CCGAGGACGAAGTAGAAAAGTCAAAGAGCTCGAAGGACAAGAAGGCAAATGGACCTGATT 2161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2047 CCGAGGACGAAGTAGAAAAGTCAAAGAGCTCGAAGGACAAGAAGGCAAATGGACCTGATT 2106
Query 2162 CAAAAGGACCAGGCCTTGTGTTTAAAATAACCTGCAAGGTTCCCTATAAGACTGTACTCA 2221
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2107 CAAAAGGACCAGGCCTTGTATTTAAAATAACCTGCAAGGTTCCCTATAAGACTGTACTAA 2166
Query 2222 AAGCTCACAATGCCCTTGTGCTTAAGGCTGAGAGTGTAGTCGACAAGAACGAGTGGATTA 2281
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2167 AAGCTCACAATGCCCTTGTGCTTAAGGCTGAGAGTGTAGTCGATAAGAACGAGTGGATTA 2226
Query 2282 ATAAGTTGCAAAAGGTTATCCAGGCTCGTGGAGGCCAAGTGGGCAGTGTTTCCATGAGGC 2341
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2227 ATAAGTTGCAAAAGGTTATCCAGGCTCGTGGAGGCCAAGTGGGCAGTGTTTCCATGAGAC 2286
Query 2342 AGAGTCTTTCAGAAGGTTCACTTGATAAGATGGTTAGGAAACCCATCGATCCAGAAGAGG 2401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2287 AGAGTCTTTCAGAAGGTTCACTTGATAAGATGGTTAGGAAACCCATCGATCCAGAAGAGG 2346
Query 2402 AGCTCCGGTGGATGTCCCAAGAAGTACGGGGTTACGTTGAAGCTGTTCTTAACAGCCTTG 2461
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2347 AGCTCCGGTGGATGTCCCAAGAAGTACGGGGTTATGTTGAAGCTGTTCTTAACAGTCTTG 2406
Query 2462 CAGCCAATGTTCCAAAGGCTGTTGTTCTTTGTCAAGTAGAGAAAGCAAAGGAAGACATGC 2521
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2407 CAGCCAATGTTCCAAAGGCTGTTGTTCTTTGTCAAGTGGAGAAAGCAAAGGAAGACATGC 2466
Query 2522 TGAATCAACTCTACAGTTCTATAAGTGCAATAGGCAATGAAAGGATTGAGTCATTGATAC 2581
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2467 TGAATCAACTATACAGTTCTATAAGTGCAATAGGCAATGAAAGGATTGAGTCATTGATTC 2526
Query 2582 AAGAGGATCAGAATGTCAAAAGACGAAGAGAGCGTTACCAGAAACAATCCTCTCTTCTTT 2641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2527 AAGAGGATCAGAATGTCAAAAGACGAAGAGAGCGTTACCAGAAACAATCCTCTCTTCTTT 2586
Query 2642 CTAAACTCACGAGGCAGCTTAGCATTCACGACAACCGAGCAGCAGCTGCTTCAAGTTATT 2701
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2587 CGAAACTCACGAGGCAGCTTAGCATTCACGACAATCGAGCAGCTGCTGCTTCAAGTTATT 2646
Query 2702 CGGACAACAGTGGCACTGAGAGTAGCCCAAGAGCAAGTGGAGGTTCTTCAGGGGACGACT 2761
||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 2647 CGGACAATAGTGGCACTGAAAGTAGCCCAAGAACAAGTGGAGGTTCTTCAGGGGACGACT 2706
Query 2762 GGATGAATGCCTTCAACTCCGCTGCTAATGGACCCTCAGACTCATTGTCAAAGTACGGTT 2821
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 2707 GGATGAATGCCTTCAACTCCGCTGCTAACGGACCCTCAGACTCATTGTCAAGGTACGGTT 2766
Query 2822 CCGGTGGTCACAGCCGCCGTTACAGTGACCCTGCGCAGAACGGAGATGCAGCATCACCAG 2881
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 2767 CCGGTGGTCACAGCCGCCGCTACAGTGACCCCGCTCAGAACGGAGATGCAGCATCACCAG 2826
Query 2882 GGTCTGGTAGCAACCGCCGCACCACCCCCAATCGGTTGCCACCAGCACCACCGCCTACAG 2941
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2827 GCTCTGGTAGCAACCGCCGCACCACCCCCAATCGGTTGCCACCAGCACCACCGCCGACAG 2886
Query 2942 GTTCAGCTTATAGGTATTAGAACCTGAAG-AAAAAAC-CCTGGAAGCGCATTGTGTCCCG 2999
|||||||||| |||||||||| ||||| | |||||| ||||||||||||||| ||||||
Sbjct 2887 GTTCAGCTTACAGGTATTAGACCCTGAGGGAAAAAAAACCTGGAAGCGCATTGGGTCCCG 2946
Query 3000 TTTTCTGGGACTACGTTACTCTTATTTTTTCTAGTTTAAGACAGTGATTGGATGATTGTA 3059
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2947 TTTTCTGGGACTAAGTTACTCTTATTTTTTCTAGTTTAAGACAGTGATTGGATGATTGTA 3006
Query 3060 CTACTGTTTTTTGGTCTTTGTAGATAGATATTATCACACACATGTGTTGGCAGCTAAAAA 3119
|||||||||| | ||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 3007 CTACTGTTTTGTCTTCTTTGTAGATAGATATTATC-CACACATGTGTTCGCAGCTAAAA- 3064
Query 3120 AGAGTTTGGTCTCATGAGTCAAATGTCTGtttgaatttttgttttatttcttattcaact 3179
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3065 -GAGTTTGGTCTCATGAGTCAAATGTCTGTTTGAATTTTTGTTTTGTTTCTTATTCAACT 3123
Query 3180 -tttcttggcatccattttttgAGCACGCTATGCTGT-AGTAGTTATAGAATGAATTTTG 3237
||| |||||||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 3124 ATTT-TTGGCATCCATTTTTTGAGCACCCTATGCTGTGA-TAGTTATAGAATGAATTTTG 3181
Query 3238 TATCTGATATTCTTATGAATCTGAACTGTTTGGGTAAATTACTA 3281
|||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3182 TATCTGATATTCTTATGAATCTGAACCGTTTGGGTAAATTACTA 3225
Score = 111 bits (60), Expect = 3e-23
Identities = 65/67 (97%), Gaps = 1/67 (1%)
Strand=Plus/Plus
Query 1 CTTACGAAATCCCCAACGAAAAATC-TTAGCTTAACACCATCGCGACCGGATTCCAAATT 59
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 CTTACGAAATCCCCGACGAAAAATCTTTAGCTTAACACCATCGCGACCGGATTCCAAATT 60
Query 60 CCGGCCC 66
|||||||
Sbjct 61 CCGGCCC 67
> Ahg475352 jgi|Araly1|475352|fgenesh2_kg.2__482__AT1G59610.1
Length=3209
Score = 3094 bits (1675), Expect = 0.0
Identities = 2428/2789 (87%), Gaps = 62/2789 (2%)
Strand=Plus/Plus
Query 215 CGATGGAGGCGATCGATGAGTTGTCTCAGCTCTCAGATTCGATGAAG-CAGGCGGCGTCT 273
||||||||||||||||||||||||||||||| || ||||||||| || || |||||| |
Sbjct 193 CGATGGAGGCGATCGATGAGTTGTCTCAGCTTTCGGATTCGATG-AGACAAGCGGCGGCG 251
Query 274 CTCCTCGCCGACGAAGATCCCGACGAAACCTCTTCTTCCAAG-CGCCCTGCCACTTTC-C 331
|| ||||| |||||||||||||| || |||||||||| | || || || || || ||| |
Sbjct 252 CTACTCGCTGACGAAGATCCCGATGAGACCTCTTCTT-CTAGACGGCCAGCTAC-TTCTC 309
Query 332 TCAACGTCGTTG-CCTTGGGAAATGTGGGAGCTGGAAAGTCTGCAGTTCTAAACAGTCTA 390
|||||||||||| ||| ||| ||||||||||||||||||||||||||||| || || |||
Sbjct 310 TCAACGTCGTTGCCCTAGGG-AATGTGGGAGCTGGAAAGTCTGCAGTTCTGAATAGCCTA 368
Query 391 ATTGGGCATCCAGTGCTGCCGACGGGTGAGAATGGTGCTACACGAGCTCCTATAATAATT 450
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || |||
Sbjct 369 ATTGGGCATCCAGTTCTGCCGACGGGTGAGAATGGTGCGACACGGGCTCCTATTATCATT 428
Query 451 GAATTGAGCAG-GGAGAGTTCTTTGAGCAGCAAGGCAATTATCTTGCAAATCGACAATAA 509
|| ||||| || | ||| || |||||||||||||||| ||||||||||| ||||||||
Sbjct 429 GATTTGAGTAGAGAAGA-ATCACTGAGCAGCAAGGCAATCATCTTGCAAATTGACAATAA 487
Query 510 ATCTCAACAAGTTTCTGCAAGTGCTTTGAGACATTCTCTGCAAGATAGACTTAGCAAAGG 569
| ||||||||||||||||||||| | || |||||||| |||||||| |||||||||||
Sbjct 488 AAATCAACAAGTTTCTGCAAGTGCGCTAAGGCATTCTCTACAAGATAGGCTTAGCAAAGG 547
Query 570 AGCCTCAGGGAA-GAATCGTGATGAAATAAACTTAAAACTTCGTACCAGCACAGCTCCAC 628
||||||| |||| | ||||||||||||| || |||||||||||||||||||||||||||
Sbjct 548 AGCCTCA-GGAAGGGGTCGTGATGAAATATACCTAAAACTTCGTACCAGCACAGCTCCAC 606
Query 629 CATTGAAATTAG-TTGATCTGCCTGGACTGGACCAGAGAATTGTGGACGAGTCAATGATT 687
|| ||||||| | ||||| ||||||||||||||||| ||||||||||||| || ||||||
Sbjct 607 CACTGAAATT-GATTGATTTGCCTGGACTGGACCAGCGAATTGTGGACGATTCTATGATT 665
Query 688 GCTGAATACGCGCAACACAATGATGCCATACTGCTGGTTATAGTGCCTGCTAGCCAGGCA 747
| |||| | || || ||||| ||||||||| |||||||| | ||||||||||||||||||
Sbjct 666 GGTGAACATGCACAGCACAACGATGCCATATTGCTGGTTGTTGTGCCTGCTAGCCAGGCA 725
Query 748 TCTGAAATTTCATCATCCCGAGCCCTGAAGATTGCAAAGGAGTATGATCCAGAGAGTACT 807
||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 726 TCTGAAATTTCGTCATCTCGAGCCCTGAAGATCGCAAAGGAGTATGATCCAGAGAGTACC 785
Query 808 AGGACAATAGGCATTATTGGAAAAATTGACCAGGCAGCAGAGAACTCGAAAGCCCTTGCA 867
|||||| |||| ||||| | |||||||| ||||||||||||||| | ||| ||||||||
Sbjct 786 AGGACAGTAGGAATTATCAGCAAAATTGATCAGGCAGCAGAGAACCCAAAATCCCTTGCA 845
Query 868 GCTGTTCAGGCTCTTCTTTCAAATCAAGGACCTCCAAAAACAACTGACATTCCATGGGTT 927
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 846 GCAGTTCAGGCTCTTCTTTCAAATCAAGGACCTCCAAAAACAACTGATATTCCATGGGTT 905
Query 928 GCTGTTATTGGCCAATCCGTTTCAATTGCGTCAGCACAGTCTGGAAGTGGTGAGAACTCC 987
|| ||||||||||||| || |||||||| ||||| |||||||| | ||||||||||
Sbjct 906 GCACTTATTGGCCAATCTGTCTCAATTGCATCAGCGCAGTCTGGTGGCAGTGAGAACTCT 965
Query 988 TTAGAAACTGCTTGGCGTGCTGAGAGTGAAAGTCTTAAGTCCATTTTGACTGGGGCTCCA 1047
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 966 TTAGAAACTGCTTGGCGTGCTGAGAGTGAAAGTCTGAAATCCATTTTGACTGGTGCTCCA 1025
Query 1048 CAAAGCAAGCTTGGCAGAATTGCGTTGGTGGATACCCTTGCTAGCCAGATTCGTAGCAGA 1107
|||||||| |||||||||||||| |||| || || ||||||||||||||||||||||||
Sbjct 1026 CAAAGCAAACTTGGCAGAATTGCCCTGGTCGACACTCTTGCTAGCCAGATTCGTAGCAGA 1085
Query 1108 ATGAAGCTCAGGCTTCCAAGTGTCCTGTCTGGGCTCCAGGGTAAGTCTCAAATAGTGCAG 1167
||||||||||||||||||| || | |||| |||||||||||||||||||||||||||
Sbjct 1086 ATGAAGCTCAGGCTTCCAAACATCTTAACTGGACTCCAGGGTAAGTCTCAAATAGTGCAG 1145
Query 1168 GATGAGCTAGCGAGGCTTGGTGAACAACTAGTTAACAGTGCTGAAGGTACAAGGGCTATA 1227
|| || |||||||||||||||| ||| | |||| |||||||||||| |||||||| |||
Sbjct 1146 GACGAATTAGCGAGGCTTGGTGAGCAATTGGTTAGCAGTGCTGAAGGCACAAGGGCAATA 1205
Query 1228 GCTTTGGAGCTTTGCCGTGAGTTTGAAGACAAGTTTCTTCTGCACTTGGCTGGTGGTGAA 1287
|||||||||||||| ||||||||||| ||||| |||||||| || || ||||||||||||
Sbjct 1206 GCTTTGGAGCTTTGTCGTGAGTTTGAGGACAAATTTCTTCTCCATTTAGCTGGTGGTGAA 1265
Query 1288 GGAAGTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGAAATTTCCCCAACCGTATCAAGCAG 1347
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1266 GGAAGTGGTTGGAAGGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACCGTATCAAACAG 1325
Query 1348 CTTCCATTGGATAGACATTTTGACCTGAACAATGTTAAAAGGGTTGTTTTGGAGGCAGAT 1407
|||||||||||||||||||||||| |||||||||| |||||| | || ||||||||||||
Sbjct 1326 CTTCCATTGGATAGACATTTTGACTTGAACAATGTCAAAAGGATCGTGTTGGAGGCAGAT 1385
Query 1408 GGTTATCAACCTTATCTTATATCTCCAGAGAAAGGGTTGAGATCGTTGATAAAGATTGTC 1467
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 1386 GGTTATCAACCTTATCTTATATCTCCAGAGAAAGGGTTGAGATCGTTAATAAAAACCGTT 1445
Query 1468 CTTGAGTTGGCTAAAGACCCGGCACGCCTTTGTGTTGATGAGGTTCACCGAGTTCTTGTT 1527
|||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||
Sbjct 1446 CTTGAGTTGGCTAAAGACCCAGCACGGCTATGTGTTGATGAGGTTCACCGAGTGCTTGTT 1505
Query 1528 GACATAGTTTCAGCTTCTGCAAATGCTACACCTGGACTTGGGAGATATCCTCCTTTCAAG 1587
||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct 1506 GACATAGTTTCAGCTTCCGCGAATGCCACACCTGGTCTTGGGAGATATCCTCCTTTTAAG 1565
Query 1588 CGAGAGGTTGTAGCTATAGCAAGTGCAGCACTTGATGGTTTCAAGAATGAAGCCAAGAAA 1647
||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 1566 AGAGAGGTTGTAGCTATAGCAAGTGCCGCACTTGATGGATTCAAGAATGAAGCTAAGAAG 1625
Query 1648 ATGGTGGTTGCACTAGTTGATATGGAACGCGCTTTTGTACCACCTCAACATTTTATCCGT 1707
||||| |||||| ||||||||||||| || || ||||||||||||||||| || |||||
Sbjct 1626 ATGGTAGTTGCATTAGTTGATATGGAGCGTGCATTTGTACCACCTCAACACTTCATCCGC 1685
Query 1708 CTTGTGCAAAGGAGAATGGAAAGACAACGTCGCGAGGAAGAGCTGAAAGGGCGATCTTCT 1767
|| || ||||| ||||||||||| || ||||| ||||| ||||| ||||| || || |||
Sbjct 1686 CTCGTACAAAGAAGAATGGAAAGGCAGCGTCGTGAGGAGGAGCTAAAAGGTCGTTCCTCT 1745
Query 1768 AAGAAGGGACAAGATGCAGAGCAGTCCCTTTTAAGCAGGGCTACTAGTCCTCAGCCAGAT 1827
|| ||||||||||||||||||||||| || |||| |||||| ||||||||||||||||||
Sbjct 1746 AAAAAGGGACAAGATGCAGAGCAGTCTCTCTTAAACAGGGCAACTAGTCCTCAGCCAGAT 1805
Query 1828 GGGCCA--A-CAGCTGGTGGTAGCTTAAAATCAATGAAAGACAAA------CCT-A-G-T 1875
|||||| | || ||||||||||||||||||| ||| ||||||| || | | |
Sbjct 1806 GGGCCATCATCAACTGGTGGTAGCTTAAAATCTTTGAGAGACAAATTAATGCCGCAAGAT 1865
Query 1876 CC-G-CAA-GATAAAGA----GA--CGCCGGAGGTCTCTGGTCTGAAAACTGCTGGACCT 1926
| ||| |||||||| || | |||||||| ||||||||||| ||||||||||||
Sbjct 1866 AAAGACAAAGATAAAGATAAAGAGACTCCGGAGGTGTCTGGTCTGAAGACTGCTGGACCT 1925
Query 1927 GAGGGGGAGATAACAGCAGGGTACTTAATGAAGAAAAGTGCAAAAACAAATGGGTGGAGT 1986
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1926 GAGGGAGAGATAACAGCAGGGTACTTAATGAAGAAAAGTGCAAAGACAAATGGGTGGAGT 1985
Query 1987 AGGCGATGGTTTGTTCTGAATGAGAAAACTGGAAAGCTTGGCTATACCAAAAAGCAAGAA 2046
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct 1986 AGGCGATGGTTTGTTCTGAATGAAAAAACAGGAAAGCTTGGCTATACAAAAAAACAAGAA 2045
Query 2047 GAAAGAAACTTTCGGGGCAC-GATAACTTTGGAGGAATGCACTATTGAAGAAATCCCCGA 2105
|| |||||||| || ||||| | |||||||||||||||||| ||| |||||||| | ||
Sbjct 2046 GAGAGAAACTTCCGCGGCACTG-TAACTTTGGAGGAATGCAGTATCGAAGAAATTTCTGA 2104
Query 2106 GGACGAAGTAGAAAAGTCAAAGAGCTCGAAGGACAAGAAGGCAAATGGACCTGATTCAAA 2165
|| |||| |||||| ||||||||||| || || ||||| |||||||||||||||||||
Sbjct 2105 TGATGAAGGAGAAAAATCAAAGAGCTCTAAAGATAAGAAATCAAATGGACCTGATTCAAA 2164
Query 2166 AGGACCAGGCCTTGTGTTTAAAATAACCTGCAAGGTTCCCTATAAGACTGTACTCAAAGC 2225
||||||||||||||| ||||| ||||| |||| |||||| |||||||||||||| |||||
Sbjct 2165 AGGACCAGGCCTTGTATTTAAGATAACTTGCAGGGTTCCTTATAAGACTGTACTTAAAGC 2224
Query 2226 TCACAATGCCCTTG-TGCTTAAGGCTGAGAGTGTAGTCGACAAGAACGAGTGGATTAATA 2284
||| ||||| ||| | || ||||| ||||| | || || ||||| || ||||||||||
Sbjct 2225 TCATAATGCG-TTGGTTCTCAAGGCCGAGAGCATGGTTGATAAGAATGAATGGATTAATA 2283
Query 2285 AGTTGCAAAAGGTTATCCAGGCTCGTGGAGGCCAAGTGGGCAGTGTTTCCATGAGGCAGA 2344
|| ||||||||||||||||||| || |||||||||||||| || | ||||||||| || |
Sbjct 2284 AGCTGCAAAAGGTTATCCAGGCCCGAGGAGGCCAAGTGGGTAGCGCTTCCATGAGACAAA 2343
Query 2345 GTCTTTCAGAAGGTTCACTTGATAAGATGGTTAGGAAACCCATCGATCCAGAAGAGGAGC 2404
||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct 2344 GTCTTTCAGAAGGTTCACTTGATAAGATGGTAAGGAAACCGGTCGACCCAGAAGAGGAAT 2403
Query 2405 TCCGGTGGATGTCCCAAGAAGTACGGGGTTACGTTGAAGCTGTTCTTAACAGCCTTGCAG 2464
| |||||||||||||||||||||||||||||||||||||||||||| ||||| || || |
Sbjct 2404 TGCGGTGGATGTCCCAAGAAGTACGGGGTTACGTTGAAGCTGTTCTCAACAGTCTAGCTG 2463
Query 2465 CCAATGTTCCAAAGGCTGTTGTTCTTTGTCAAGTAGAGAAAGCAAAGGAAGACATGCTGA 2524
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 2464 CCAATGTTCCAAAGGCTGTTGTTCTTTGTCAAGTGGAGAAATCAAAGGAAGACATGCTGA 2523
Query 2525 ATCAACTCTACAGTTCTATAAGTGCAATAGGCAATGAAAGGATTGAGTCATTGATACAAG 2584
|||| || ||||| ||||| || ||||| || ||||| |||||||| |||||||| ||||
Sbjct 2524 ATCAGCTATACAGCTCTATCAGCGCAATTGGTAATGAGAGGATTGAATCATTGATTCAAG 2583
Query 2585 AGGATCAGAATGTCAAAAGACGAAGAGAGCGTTACCAGAAACAATCCTCTCTTCTTTCTA 2644
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | |
Sbjct 2584 AGGATCAGAATGTCAAAAGACGAAGAGACCGTTACCAGAAACAGTCCTCTCTTCTCAC-A 2642
Query 2645 AA-CTCACGAGGCAGCTTAGCATTCACGACAACCGAGCAGCAGCTGCTTCAAGTTATTCG 2703
|| ||||| |||||||||||||||||||| ||| ||||||| ||||||||||| | ||
Sbjct 2643 AAGCTCACAAGGCAGCTTAGCATTCACGATAACAGAGCAGCTGCTGCTTCAAGCTGGTCT 2702
Query 2704 GACAACAGTGGCACTGAGAGTAGCCCAAGAGC-AAGTGGAGGTTCTTCAGGGGACGACTG 2762
||||| ||||||||||| || ||||| ||| | || |||||| || ||||| || |||||
Sbjct 2703 GACAATAGTGGCACTGAAAGCAGCCCGAGAACCAA-TGGAGGGTCATCAGGAGAGGACTG 2761
Query 2763 GATGAATGCCTTCAACTCCGCTGCTAATGGACCCTCAGACTCATTGTCAA-AG-TACGGT 2820
||||||||| || ||| | ||||||| |||||| | ||||||||| || || |||||
Sbjct 2762 GATGAATGCGTTTAACGCAGCTGCTAGTGGACC-T--GACTCATTG--AAGAGATACGGA 2816
Query 2821 TCCGGTGGTCACAGCCGCCGTTACAGTGACCCTGCGCAGAACGGAGATGCAGCAT-CACC 2879
|| || || || ||||||||||||||||| || ||||||||||| || | | || | |
Sbjct 2817 TCTGGCGGCCATAGCCGCCGTTACAGTGATCCAGCGCAGAACGGTGA-G--G-ATTCTTC 2872
Query 2880 AGGGTCTGGTAGCAAC-CGCCG-C--ACCACCCCCAATCGGTTGCCACCAGCACCACCGC 2935
|| ||||| ||| | | ||| | |||||||| || || | ||||||||||| || |
Sbjct 2873 TGGATCTGGCGGCAGCTC-CCGTCGGACCACCCCAAACCGACTCCCACCAGCACCGCCAC 2931
Query 2936 C-TACAGGTTCAGCTTATAGGTATTAGAA 2963
| | || ||| |||| |||||||||||
Sbjct 2932 AGT-CTGGATCATCTTACAGGTATTAGAA 2959
> Ahg347252 jgi|Araly1|347252|fgenesh1_pg.C_scaffold_5000644
Length=678
Score = 182 bits (98), Expect = 2e-44
Identities = 127/141 (90%), Gaps = 1/141 (1%)
Strand=Plus/Plus
Query 1373 TGAACAATGTTAAAAGGGTTGTTTTGGAGGCAGATGGTTATCAACCTTATCTTATATCTC 1432
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 TGAACAGTGTTAGAAGGGTTGTTTTGGAGGCAGATGGTTATCAACCTTATCTTATATCTA 436
Query 1433 CAGAGAAAGGGTTGAGATCGTTGATAAAGATTGTCCTTGAGTTGGCTAAAGACCCGGCAC 1492
|| |||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||
Sbjct 437 CAAAGAAAGGGTTCAGATCGTTGATAAAGTTTGTCATTGAGTTGGCTAAAGACCCTCCAC 496
Query 1493 GCCTTTGTGTTGATGAG-GTT 1512
| ||| |||| ||||| |||
Sbjct 497 GTCTTCATGTTCATGAGAGTT 517
> Ahg894800 jgi|Araly1|894800|Al_scaffold_0006_2796
Length=582
Score = 171 bits (92), Expect = 4e-41
Identities = 114/125 (91%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 1373 TGAACAATGTTAAAAGGGTTGTTTTGGAGGCAGATGGTTATCAACCTTATCTTATATCTC 1432
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 TGAACAGTGTTAGAAGGGTTGTTTTGGAGGCAGATGGTTATCAACCTTATCTTATATCTA 436
Query 1433 CAGAGAAAGGGTTGAGATCGTTGATAAAGATTGTCCTTGAGTTGGCTAAAGACCCGGCAC 1492
|| |||||||||| ||| ||||||||||| ||||| ||||||||||||||||||| |||
Sbjct 437 CAAAGAAAGGGTTCAGAACGTTGATAAAGTTTGTCATTGAGTTGGCTAAAGACCCTCCAC 496
Query 1493 GCCTT 1497
| |||
Sbjct 497 GTCTT 501
> Ahg946011 jgi|Araly1|946011|scaffold_702240.1
Length=235
Score = 167 bits (90), Expect = 5e-40
Identities = 115/127 (91%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 1386 AAG-GGTTGTTTTGGAGGCAGATGGTTATCAACCTTATCTTATATCTCCAGAGAAAGGGT 1444
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 67 AAGAGGTTGTTTTGGAGGCAGATGGTTATCAACCTTATCTTATATCTACAGAGAAAGGGT 126
Query 1445 TGAGATCGTTGATAAAGATTGTCCTTGAGTTGGCTAAAGACCCGGCACGCCTTTGTGTTG 1504
| ||||||||||||||||||||| |||||||||||||||| || |||| || ||||
Sbjct 127 TCAGATCGTTGATAAAGATTGTCATTGAGTTGGCTAAAGATCCTCCACGTCTCA-TGTTC 185
Query 1505 ATGAGGT 1511
|||||||
Sbjct 186 ATGAGGT 192
> Ahg486503 jgi|Araly1|486503|fgenesh2_kg.5__2495__AT3G60310.1
Length=2541
Score = 82.4 bits (44), Expect = 2e-14
Identities = 50/53 (94%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 619 ACAGCTCCACCATTGAAATTAGTTGATCTGCCTGGACTGGACCAGAGAATTGT 671
|||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 2254 ACAGCTCCACAACTGAAATTATTTGATCTGCCTGGACTGGACCAGAGAATTGT 2306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124714666721
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5