BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10300.1
Length=2064
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919805 jgi|Araly1|919805|scaffold_101086.1 2976 0.0
Ahg470457 jgi|Araly1|470457|fgenesh2_kg.1__411__AT1G50920.1 1489 0.0
> Ahg919805 jgi|Araly1|919805|scaffold_101086.1
Length=2048
Score = 2976 bits (1611), Expect = 0.0
Identities = 1903/2037 (93%), Gaps = 48/2037 (2%)
Strand=Plus/Plus
Query 67 CAGATTAAAGAAGCAAAAACAATGGTGAAATATAATTTCAAGAAGATAACAGTTGTGCCA 126
||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 CAGATTAGATAAGCAAAAACAATGGTGAAGTATAATTTCAAGAAGATAACAGTTGTGCCA 60
Query 127 AACGGAAAACAGTTTGTTGATATCGTTCTTTCCCGCACTCAGCGGCAG-ACACCAACTGT 185
|| ||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 61 AATGGAAAACAGTTTGTTGATATCGTTCTTTCCCGCACTCAGCGCCAGTCCA-AAACTGT 119
Query 186 TGTCCACAAGGGTGACAGGATTTGCAAACTCCGTAGCTTCTACATGCGGAAAGTGAAGTT 245
| |||||||| |||||| ||| ||||||||||||||||||||||| |||||||||| |
Sbjct 120 TATCCACAAGAGTGACAAGATCAGCAAACTCCGTAGCTTCTACATGATGAAAGTGAAGCT 179
Query 246 CACAGAATCAAACTTTAACGAGAAGCTCTCTGCCATTATCGACGAGTTTCCTCGCCTCAA 305
|||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
Sbjct 180 CACACAATCAAACTTTAACGATAAGCTCTCTGCCATTATCCACGAGTTTCCTCGCCTCGA 239
Query 306 GGAAATTCAACCCTTCTATGAAGATCTTCTTCATGTGCTTTACAATAAAGATCACTACAA 365
||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 TGAAATCCAACCCTTTTATGAATCTCTTCTTCATGTGCTTTACAATAAAGATCACTACAA 299
Query 366 GCTCGCTCTTGGTCAAGTCAATACTGCGAAGAACAAGATCAGCAAAATCGCCATGGATTA 425
|||||||||||||||||||||||| || ||||||||||||||||||||| || ||||||
Sbjct 300 GCTCGCTCTTGGTCAAGTCAATACCGCCAAGAACAAGATCAGCAAAATCTCCGCGGATTA 359
Query 426 TGTGAAGCTATTGAAGCATGGTGATTCTCTGTACCGATGCAAGTGCTTAAAAGTGGCTGC 485
|||||||||| | |||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 360 TGTGAAGCTACTCAAGCATGGTGATACTCTGTACCGGTGCAAGTGCTTAAAAGTGGCTGC 419
Query 486 TCTTGGGCGTATGTGTACTGTTATGAAAGGTATTGGTCCTAGTTTGGCTTATCTTGAACA 545
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 420 TCTTGGGCGTATGTGTACTGTTATGAAAGGAATTGGTCCTAGTTTGGCTTATCTTGAGCA 479
Query 546 GGTTAGGCAACACATT-GCAAGGCTTCCTTCGATTGATCCAAACACTCGAACTCTCTTGA 604
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGTTAGGCAACAC-TTGGCGAGGCTTCCTTCGATTGATCCAAACACTCGAACTCTCTTGA 538
Query 605 TCTGTGGATGTCCTAATGTGGGAAAGAGTTCTTTTATGAACAAAGTTACAAGAGCTGACG 664
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 539 TCTGTGGATGTCCTAATGTGGGAAAGAGTTCTTTTATGAACAAAGTTACAAGAGCTGATG 598
Query 665 TAGCTGTTCAGCCATATGCTTTCACAACAAAGTCACTCTTTCTTGGTCATACTGATTACA 724
| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 599 TGGATGTTCAGCCATATGCTTTCACTACAAAATCACTCTTTCTTGGTCATACTGATTACA 658
Query 725 AGTGTTTGAGGTATCAGGTGATTGATACACCGGGGCTTTTGGATAGGGAAATTGAAGACC 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGTGTTTGAGGTATCAGGTGATTGATACACCGGGGCTTTTGGATAGGGAAATTGAAGACC 718
Query 785 GTAATATCATTGAATTGTGTAGCATCACCGCGTTGGCTCATATCCGAGCTGCTGTTTTGT 844
|||||||||||||| ||||||| |||||||| ||||||||| | ||||||||||||||||
Sbjct 719 GTAATATCATTGAAATGTGTAGTATCACCGCATTGGCTCATCTTCGAGCTGCTGTTTTGT 778
Query 845 TCTTTCTTGATATTTCGGGTTCTTGTGGTTACACCATTGCTCAGCAGGCTTCTCTTTTTC 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCTTTCTTGATATTTCGGGTTCTTGTGGTTACACCATTGCTCAGCAGGCTTCTCTTTTTC 838
Query 905 ACAACATAAAGTCTGTGTTCAAGAACAAACCGTTGGTGATTGTCTGCAACAAGACTGATT 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACAACATAAAGTCTGTGTTCAAGAACAAACCGTTGGTGATTGTCTGCAACAAGACTGATT 898
Query 965 TGATGCCTATGGAGAACTTATCTGAAGAAGATAGGAAACTTATTGAAGAGATGAAAGATG 1024
||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||
Sbjct 899 TGATGCCTATGGAGAACTTATCTGAAGAAGACCGGAAGCTGATTGAAGAGATGAAAGATG 958
Query 1025 AAGCTATGAAGACTGAAATGGGAGCAAG-TGAAGAAGCAGTGATTTTGGAGATGAGTACT 1083
||||||||||||||| ||||||| ||| |||||| |||||| ||||| |||||||||||
Sbjct 959 AAGCTATGAAGACTGCCATGGGAG-AAGATGAAGATGCAGTGCTTTTGAAGATGAGTACT 1017
Query 1084 TTGACTGAAGAAGGTGTGATG----T--------C--------A-AGGCTGTTAGATCAG 1122
||||||||||||||||||||| | | | |||||||||||||||
Sbjct 1018 TTGACTGAAGAAGGTGTGATGACAGTGAGGAATGCTGCTTGTCAGAGGCTGTTAGATCAG 1077
Query 1123 AGGGTAGCGGCGAAGATGAAATCGAAAAAGATCGGTGATCACTTGAACAGGTTCCATGTG 1182
|||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||
Sbjct 1078 AGGGTAGCGGCGAAGATGAAATCGAAAAAGATCGTTGACCACTTGAACAGGTTTCATGTG 1137
Query 1183 GCGATGCCGAAGAG-TCGTGATGACCAAGAAAGGCTCCCTTGTATACCTCAGGTAGCT-- 1239
|||||||||||| | ||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1138 GCGATGCCGAAG-GCTCGTGATGACCAAGATAGGCTCCCTTTTATACCTCAGGTAGCTAA 1196
Query 1240 GG----TG---AAAAGGAGAAGCGAAAGACCGAGAAGGATTTGGAAGATGAAAATGGTGG 1292
|| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GGAAGCTGGTGAAAAGGAGAAGCGAAAGACCGAGAAGGATTTGGAAGATGAAAATGGTGG 1256
Query 1293 AGCTGGGGTTTATTCTGCTAGTCTAAAGAAGAACTACATTTTGGCTAAAGAAGAATGGAA 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AGCTGGGGTTTATTCTGCTAGTCTAAAGAAGAACTACATTTTGGCTAAAGAAGAATGGAA 1316
Query 1353 GGATGATATAATACCTGAGATCTGTGACTG-TCATAATGTTGCTGATTTTGTTGATTCAG 1411
||| || |||||||||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct 1317 GGAAGACATAATACCTGAGATCTGTGA-TGGTCACAATGTTGCTGATTTTGTTGATTCAG 1375
Query 1412 ACATCTTGAATAGGCTTGAGGAATTGACAAGTGAAGAAAGTCTTAGGAAGGCAGAGGAAG 1471
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1376 ACATTTTGAATAGGCTTGAGGAGTTGACAAGTGAAGAAAGTCTCAGGAAGGCAGAGGAAG 1435
Query 1472 AAGAAGT---TGGTTTTGAGATTGAAGGCGAAGAACTTACAGAGAAGGAGAAGAATGATT 1528
|||||| |||||||||||| ||||| ||| ||||| | |||||||||||||||||||
Sbjct 1436 AAGAAGAAAATGGTTTTGAGATCGAAGGAGAAAAACTTTCGGAGAAGGAGAAGAATGATT 1495
Query 1529 TGGCTGCTATTCGTAAGAAGAAAGCTTTGCTTATTGAAGAGAGTAGACTTAAGAAGAGCA 1588
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1496 TGGCTGCTATTCGTAAGAAGAAAGCTTTGCTTATTCAAGAGAGTAGACTTAAGAAGAGCA 1555
Query 1589 ATGCACAAAACAGAGCAGCTGTTCCAAGAAAGTTTGACAAGGATAAGAAGTTTACAAGGA 1648
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1556 ATGCACAAAACAGAGCAGCTGTTCCAAGAAAGTTTGGCAAAGATAAGAAGTTTACAAGGA 1615
Query 1649 AGAGAATGGGTAGAGAGTTATCATCTCTTGGTCTTGATCCGTCTTCTGCTTTGAACCGTG 1708
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1616 AAAGAATGGGTAGAGAGTTATCATCTCTGGGTCTTGATCCGTCTTCTGCTTTGAACCATG 1675
Query 1709 CAAGAAGCAAGTCTAGAGGCAGAAAGAGGGAAAGGTATGATGATTTGAGTA-ACGATGCA 1767
||||||||||||||||||| |||||||||||||||||||||| |||||||| | |||||
Sbjct 1676 CAAGAAGCAAGTCTAGAGGAAGAAAGAGGGAAAGGTATGATGGTTTGAGTATA-GATGCT 1734
Query 1768 ATGGATGTGGATGTGAATGATGATGAGCAACATAAGAAGAAGAAGATGTGTCTGAGATCT 1827
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1735 ATGGATGTGGATGTGAATGATGATGAGCAACA---GAAGAAGAAGATGTGTCTGAGATCC 1791
Query 1828 AAATCAAGATCTTTGTCAAGATCAAGATCAGTGTCAAGGCCACCACATGAGGTTGTACCT 1887
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1792 AGATCAAGATCTTTGTCAAGATCAAGATCAGTGTCAAGGCCACCACATGAGGTTTTACCT 1851
Query 1888 GGTGAAGGCTTCAAAGATTCTTCACAGAAGATTAAGGCAATTAAGATTGGACACAAATCT 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 GGTGAAGGCTTCAAAGATTCTTCACAGAAGATTAAGGCAATTAAGATTGGACACAAATCT 1911
Query 1948 CACAGAAAGAGGGACAAGGCTGCACGTCGTGGAGAAGCAGACAGAGTTATACCATCTCTT 2007
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 CACAGAAAGAGAGACAAAGCTGCACGTCGTGGAGAAGCAGACAGAGTTATACCATCTCTT 1971
Query 2008 AAACCAAAACACTTGTTTTCAGGGAAAAGAGGCAATGGAAAAAACCAAAGGCGTTGA 2064
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 AAACCAAAACACTTGTTTTCAGGGAAAAGAGGCAATGGAAAAAACCAAAGGCGTTGA 2028
> Ahg470457 jgi|Araly1|470457|fgenesh2_kg.1__411__AT1G50920.1
Length=2238
Score = 1489 bits (806), Expect = 0.0
Identities = 1657/2054 (81%), Gaps = 113/2054 (6%)
Strand=Plus/Plus
Query 87 AATGGTGAAATATAATTTCAAGAAGATAACAGTTGTGCCAAACGGAAAACAGTTTGTTGA 146
|||||| |||| || ||||||||||| || ||||| || || || || |||| |||||
Sbjct 28 AATGGTTCAATACAACTTCAAGAAGATCACTGTTGTTCCCAATGGGAAGGAGTTCGTTGA 87
Query 147 TATCGTTCTTTCCCGCACTCAGCGGCAGACACCAACTGTTGTCCACAAGGG-TGACAGGA 205
||| | ||||| || |||||||| |||||||||||||||||||||||||| | ||| ||
Sbjct 88 CATCATCCTTTCACGGACTCAGCGTCAGACACCAACTGTTGTCCACAAGGGCT-ACAAGA 146
Query 206 TTTGCAAACTCCGT-AGCTTCTACATGCGGAAA-GTGAAGTTCA--CAGAATCAAACTTT 261
|| | |||||| || ||||||||| |||| || |||| || ||| | |||||||
Sbjct 147 TTAACCGTCTCCGTCAG-TTCTACATG-AGAAAGGTTAAGTACACTCAG-A-CAAACTTC 202
Query 262 AACGAGAAGCTCTCTGCCATTATCGACGAGTTTCCTCGCCTCAAGGAAATTCAACCCTTC 321
| ||||||||||| | || || || |||||||||||||| | |||| || || |||
Sbjct 203 CATGAGAAGCTCTCCACAATCATTGAGGAGTTTCCTCGCCTTGATCAAATCCATCCTTTC 262
Query 322 TATGAAGATCTTCTTCATGTGCTTTACAATAAAGATCACTACAAGCTCGCTCTT-GGTCA 380
|||| ||||||||||| |||||||||||||||||||| |||||||| ||| || || ||
Sbjct 263 TATGGTGATCTTCTTCACGTGCTTTACAATAAAGATCATTACAAGCTTGCT-TTAGGCCA 321
Query 381 AGTCAATACTGCGAAGAACAAGATCAGCAAAATCGCCATGGATTATGTGAAGCTATTGAA 440
||| |||||||||| |||| ||| ||||||||| ||| |||||||||||||||| | ||
Sbjct 322 AGTGAATACTGCGAGGAACTTGATTAGCAAAATCTCCAAGGATTATGTGAAGCTACTCAA 381
Query 441 GCATGGTGATTCTCTGTACCGATGCAAGTG-CTTAAAAGTGGCTGCTCTTGGGCGTATGT 499
| ||||||||||| ||||||| |||||||| ||| ||||| ||||||||||| |||||||
Sbjct 382 GTATGGTGATTCTTTGTACCGGTGCAAGTGTCTT-AAAGTCGCTGCTCTTGGTCGTATGT 440
Query 500 GTACTGTTATGAA-AGGTATTGGTCCTAGTTTGGCTTATCTTGAACAGGTTAGGCAACAC 558
| |||||| |||| ||| || |||||||||||||||||| || ||| | ||||| |||
Sbjct 441 GCACTGTTTTGAAGAGG-ATCACTCCTAGTTTGGCTTATCTCGAGCAGATCAGGCAGCAC 499
Query 559 ATTGCAAGGCTTCCTTCGATTGATCCAAACACTCGAACTCTCTTGATCTGTGGATGTCCT 618
|| |||||||||||||| ||||| ||||||||||| ||| ||||||||||||||| |||
Sbjct 500 ATGGCAAGGCTTCCTTCCATTGACCCAAACACTCGTACTGTCTTGATCTGTGGATACCCT 559
Query 619 AATGTGGGAAAGAGTTCTTTTATGAACAAAGTTACAAGAGCTGACGTAGCTGTTCAGCCA 678
|||||||| |||||||||||||||||||| ||||| |||||||| || | ||| ||||||
Sbjct 560 AATGTGGGCAAGAGTTCTTTTATGAACAAGGTTACCAGAGCTGATGTTGATGTCCAGCCA 619
Query 679 TATGCTTTCA-CAACAAAGTCACTCTTTCTTGGTCATACTGATTACAAGTGTTTGAGGTA 737
|||||||||| || |||| || |||||| ||||||||||||||||||||| |||||||
Sbjct 620 TATGCTTTCACCACCAAA-TCGCTCTTTGTTGGTCATACTGATTACAAGTACCTGAGGTA 678
Query 738 TCAGGTGATTGATACACCGGGGCTTTTGGATAGGGAAATTGAAGACCGTAATATCATTGA 797
|| || |||||||| || ||| ||||||| ||| | ||||||||||||| ||||||||
Sbjct 679 CCAAGTCATTGATACCCCTGGGATTTTGGACAGGCCATTTGAAGACCGTAACATCATTGA 738
Query 798 ATTGTGTAGCATCACCGCGTTGGCTCATATCCGAGCTGCTGTTTTGTTCTTTCTTGATAT 857
| |||| || ||||| || ||||| ||| | ||||||||||||||||||||||| || ||
Sbjct 739 AATGTGCAGTATCACAGCTTTGGCCCATCTTCGAGCTGCTGTTTTGTTCTTTCTGGACAT 798
Query 858 TTCGGGTTCTTGTGGTTACACCATTGCTCAGCAGGCTTCTCTTTTTCACAACATAAAGTC 917
||| || || ||||||||||||||||||||||||||| ||||||| |||| ||| |||||
Sbjct 799 TTCTGGATCATGTGGTTACACCATTGCTCAGCAGGCTGCTCTTTTCCACAGCATTAAGTC 858
Query 918 TGTGTTCAAGAACAAACCGTTGGTGATTGTCTGCAACAAGACTGATTTGATGCCTATGGA 977
|||| | ||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 859 CCTGTTTATGAACAAACCATTGGTGATTGTCTGCAACAAGACTGATTTGATGCCCATGGA 918
Query 978 GAACTTATCTGAAGAAGATAGGAAACTTATTGAAGAGATGAAAGATGAAGCTATGAAGAC 1037
||| | |||||||||||| |||| || |||||||||||||||| |||||||||||||||
Sbjct 919 AAACATCTCTGAAGAAGATCGGAAGCTGATTGAAGAGATGAAAGCTGAAGCTATGAAGAC 978
Query 1038 TGAAATGGGAGCAAGTGAAGAAGCAGTGATTTTGGAGATGAGTACTTTGACTGAAGAAGG 1097
|| ||||||||||||||||||||| ||| ||||| ||||||||||| |||| || |||||
Sbjct 979 TGCAATGGGAGCAAGTGAAGAAGCTGTGCTTTTGAAGATGAGTACTCTGACAGACGAAGG 1038
Query 1098 TGTGATGTC----AAG---GC----TGT-------T---AGATCAGAGGGTAGCGGCGAA 1136
||||||||| ||| || ||| | |||||| ||||||| ||||||
Sbjct 1039 TGTGATGTCTGTGAAGAATGCCGCATGTGAGAGGCTGTTAGATCAAAGGGTAGAGGCGAA 1098
Query 1137 GATGAAATCGAAAAAGATCGGTGATCACTTGAACAGGTTCCATGTGGCGATGCCGAAGAG 1196
||||||||| ||||||||| || ||| | ||||||||||||||||| |||||||||
Sbjct 1099 GATGAAATCCAAAAAGATCAACGACCACCTAAACAGGTTCCATGTGGCTATGCCGAAGCC 1158
Query 1197 TCGTGATGACCA-AGAAAGGCTCCCTTGTATACCTCAGGTAG--CTGGTG---AAA---A 1247
||||||| | || | ||||||||||||| ||||||||||| | |||| | ||| |
Sbjct 1159 TCGTGAT-AGCATACAAAGGCTCCCTTGCATACCTCAGGTTGTTCTGGAGGCTAAAGCTA 1217
Query 1248 -GGA-GAAGC-G-AA---AGAC-CGA--GA-AG-GA----TTTGGAAGATGAAAATGGTG 1291
||| | ||| | || ||| ||| || || || ||||||||| ||||||||||
Sbjct 1218 AGGAAGCAGCTGCAATGGAGAAACGAAAGACAGAGAAAGATTTGGAAGAGGAAAATGGTG 1277
Query 1292 GAGCTGGGGTTTATTCTGCTAGTCTAAAGAAGAACTACATTTTGGC-TAAAGAAGAATGG 1350
||||||| |||||||||||||||||||||||||||||||| ||| | | | || ||||||
Sbjct 1278 GAGCTGGAGTTTATTCTGCTAGTCTAAAGAAGAACTACATCTTG-CATCATGATGAATGG 1336
Query 1351 AAGGATGATATAATACCTGAGAT-CTGTGACTG-TCATAATGTTGCTGATTTTGTTGATT 1408
||||| || || || |||||||| || || || ||||||||| ||||| || |||||
Sbjct 1337 AAGGAAGACATTATGCCTGAGATTCTC-GA-TGGTCATAATGTGGCTGACTTCATTGATC 1394
Query 1409 CAGACATCTTGAATAGGCTTGAGGAATTGACAA-GTGAAGAA-AGTCTTAGGAA-GGCAG 1465
||||||| ||| | ||||||||||| ||| || |||||||| || | || | ||| |
Sbjct 1395 CAGACATTTTGGAGAGGCTTGAGGAGTTGG-AACGTGAAGAAGAGA-TAAG-ACTGGCTG 1451
Query 1466 AGGAAGAAGAAGTTGGTTTTGAGATTGAAGGCGAAGAA-CTTACAGAGAAGGAGAAGAAT 1524
|| ||||||| || | | ||||| || ||| || ||| | ||| ||||| |||
Sbjct 1452 GGGTTGAAGAAGCTGATATGGAGATGGATTTTGAA-AAGCTTTCGGAGGAGGAGGTGAA- 1509
Query 1525 G-AT-TTGGCTGCTATTCGTAAGAAGAAAGCTTTGCTTATT-GAAGAG-AGTAGACTTAA 1580
| | ||| |||| ||||| ||||||| |||| | || ||| || ||| | || || ||
Sbjct 1510 GCAGCTTG-CTGCCATTCGAAAGAAGAGAGCTGTACTCATTCGA-GAGCAC-AGGCTCAA 1566
Query 1581 GAAGAGCAATGCACAAAACAGAGCAGCTGTTCCAAGAAAGTTTGACAAGGATAAGAAGTT 1640
||||| | |||||| ||| || || ||||||||||||||||||| ||||| |||||||
Sbjct 1567 GAAGACCGTTGCACAGAACCGATCAACTGTTCCAAGAAAGTTTGATAAGGACAAGAAGTA 1626
Query 1641 TACAAGGAAGAGAATGGGTAGAGAGTTATCATCTCTTGGTCTTGATCCGTCTTCTGCTTT 1700
|||| |||||||||||||| ||||||||| || | || ||||||||||||||||| |
Sbjct 1627 CACAACAAAGAGAATGGGTAGGGAGTTATCAGCTATGGGACTTGATCCGTCTTCTGCAAT 1686
Query 1701 GAACCGTGCAAGAAGCAAGTCTAGAGGCAGAAAGAGGGAAAGGT-ATGATGATTTGAGTA 1759
|||||| |||||||||||||||||||| ||||||||||| | | | || ||| | |||
Sbjct 1687 GAACCGCGCAAGAAGCAAGTCTAGAGGGAGAAAGAGGGATCGATCA-GAAGATGCGGGTA 1745
Query 1760 ACGATGCAATGGATGTGGATGTGAATGATGATGAGCAACA-TAAGAAGAAGAAG-ATGTG 1817
||||||||||||| ||||||| | ||| | ||||| | ||| |||||| | | |
Sbjct 1746 ACGATGCAATGGACGTGGATG--A-TGA-G-----CAACAGTC-GAACAAGAAGCA-GCG 1794
Query 1818 TCTGAGATCTAAA-TCAAGATCTTTGTCAAGATCAAGATCAGTGTCAAGGCCACC---AC 1873
| ||||||| ||| || ||| || |||| | ||||||||| ||||||||| || ||
Sbjct 1795 TGTGAGATC-AAAGTCTAGAACTATGTCGATATCAAGATCTCAGTCAAGGCCTCCTGCAC 1853
Query 1874 ATGAGGTTGTACCTGGTGAAGGCTTCAAAGATTCTTCACAGAAGAT-TAAGGCAATTAAG 1932
|||| || || ||||||||||| |||||||| ||| | ||||||| | ||| ||||||
Sbjct 1854 ATGAAGTGGTGCCTGGTGAAGGATTCAAAGACTCTACTCAGAAGAAATC-GGCCATTAAG 1912
Query 1933 ATTGGACAC-AAATCTCACAGAAAGAGGGACAAGGCTGCACGTCGTGGAGAAGCAGACAG 1991
||| | || |||||||||| |||||| |||||| |||||||||||| ||||| |||||
Sbjct 1913 ATTAG-CAATAAATCTCACAAAAAGAGAGACAAGAATGCACGTCGTGGTGAAGCTGACAG 1971
Query 1992 AGTTATACCATCTCTTAAACCAAAACACTTGTTTTCAGGGAAAAGAGGCAATGGAAAAAA 2051
|||||||||| | |||| ||| ||||| ||||||||||| || ||||| || |||||||
Sbjct 1972 AGTTATACCAACACTTAGACCGAAACATTTGTTTTCAGGCAAGAGAGGGAAAGGAAAAA- 2030
Query 2052 CCAA-AGGCGTTGA 2064
|| | |||||||||
Sbjct 2031 CCGACAGGCGTTGA 2044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77627919310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5