BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10310.1
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471142 jgi|Araly1|471142|fgenesh2_kg.1__1096__AT1G10310.1 1282 0.0
> Ahg471142 jgi|Araly1|471142|fgenesh2_kg.1__1096__AT1G10310.1
Length=760
Score = 1282 bits (694), Expect = 0.0
Identities = 738/760 (97%), Gaps = 0/760 (0%)
Strand=Plus/Plus
Query 17 AGAAAGAGAAGGTAATCGGCCACGATGACGATGGCGACGCCTTTCAGTGGGGCTGCGAAC 76
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAAGAGAAATTAATCGGCCACGATGACGATGGCGACGCCTTTCAGTGGGGCTGCGAAC 60
Query 77 TCTATTGTGGCGGCGAGGACCGTTCTGATAACGGGAGTGAGCAAAGGTCTGGGAAGAGCC 136
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGTTGTGGCGGCGAGGACCGTTCTGATAACGGGAGTGAGCAAAGGTCTGGGAAGAGCC 120
Query 137 CTAGCTCTCGAGCTGGCCAAGAGGGGTCACACTGTGATAGGATGCGCTCGTAGTCAAGAG 196
|||||||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||
Sbjct 121 CTAGCTCTCGAGTTGGCCAAGAGAGGTCACTCTGTGATAGGATGCGCTCGTACTCAAGAG 180
Query 197 AAGCTCACCGCTCTTCAATCGGAGCTTTCCTCTTCGACCAATCATCTCCTCCTCACCGCT 256
|||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct 181 AAGCTCACCGCTCTTCAATCGGAGCTCTCCTCTCCGGCCAATCATCTCCTCCTCACCGCT 240
Query 257 GATGTGAAATCAAACAGCAGTGTCGAAGAAATGGCACACACAATTGTGGAGAAGAAGGGT 316
|||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct 241 GATGTGAAATCAAACAGCAGTGTCGAAGAACTGGCACAAACAATAATGGAGAAGAAGGGT 300
Query 317 GTCCCAGATATCATAGTTAACAATGCTGGTACCATCAATAAGAACAGCAAGATTTGGGAA 376
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 GTCCCAGATATCATAGTTAACAACGCTGGTACCATCAATAAGAACAGCAAGATTTGGGAA 360
Query 377 GTCTCTGCTGAAGATTTTGACAATGTCATGGATACAAACGTTAAAGGAGTTGCAAATGTG 436
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 GTCTCTGCAGAAGATTTTGACAATGTCATGGATACAAACGTTAAAGGAGTAGCAAATGTG 420
Query 437 CTGCGCCATTTTATCCCTTTGATGCTCCCACGCAAGCAAGGAATTATTGTAAATATGTCT 496
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 421 CTTCGCCATTTTATCCCTTTGATGCTCCCACGTAAGCAAGGAATTATTGTGAATATGTCT 480
Query 497 TCTGGATGGGGAAGATCTGGTGCTGCCCTGGTTGCACCTTACTGTGCATCAAAATGGGCG 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTGGATGGGGAAGATCTGGTGCTGCCCTGGTTGCACCTTACTGTGCATCAAAATGGGCG 540
Query 557 ATTGAGGGTTTAAGCCGAGCAGTGGCAAAGGAAGTAGTTGAAGGAATGGCAGTAGTTGCA 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATTGAGGGTTTAAGCCGAGCAGTGGCAAAGGAAGTAGTTGAAGGAATGGCAGTAGTTGCA 600
Query 617 TTAAATCCAGGCGTGATCAACACAGAATTACTCACTTCCTGCTTCGGGAACTCAGCTTCC 676
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTAAATCCAGGCGTGATTAACACAGAATTACTCACTTCCTGCTTCGGGAACTCAGCTTCC 660
Query 677 TTGTATCAAGCTCCTGATGCTTGGGCTGTGAAGGCTGCGACGATGATTCTGAATCTTACA 736
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 TTGTATCAAGCTCCTGATGCTTGGGCTGTGAAGGCTGCAACGATGATTCTGAATCTTACA 720
Query 737 GCGGGTGACAATGGCGGATCTCTCACAGTCTAACAACTAA 776
||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCGGGTGACAATGGCGGATCTCTCACAGTCTAACAACTAA 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33395675292
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5