BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10320.1
Length=2274
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471143 jgi|Araly1|471143|fgenesh2_kg.1__1097__AT1G10320.1 2983 0.0
> Ahg471143 jgi|Araly1|471143|fgenesh2_kg.1__1097__AT1G10320.1
Length=2319
Score = 2983 bits (1615), Expect = 0.0
Identities = 1983/2155 (92%), Gaps = 48/2155 (2%)
Strand=Plus/Plus
Query 1 ATGGAGCAAGCA-AACgaaaaggaagaagaagagcgacacgaagaagcggcgggagagaa 59
||||||| || | |||| ||||||||||| ||||||||||| ||||||| || ||||||
Sbjct 1 ATGGAGC-AGAAGAACGGAAAGGAAGAAGGAGAGCGACACGGAGAAGCGTTGGAAGAGAA 59
Query 60 ggaaagttttgaagagagtaaagagaaagCGGCGGAGATGAGTCGTAAGGAGAAGCGAAA 119
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 60 GGAAAGTTTTGAAGAGAGTAAAGAGAAATTGGCGGAGATGAGCCGTAAGGAGAAGCGAAA 119
Query 120 AGCGATGAAGAAATTGAAGAGGAAGCAAGTGAGGAAGGAGATTGCGGCGAAGGAGAGGGA 179
|| | |||||||||||||||||||||| |||||||||||||| |||| ||||||||||||
Sbjct 120 AGTGTTGAAGAAATTGAAGAGGAAGCAGGTGAGGAAGGAGATAGCGGAGAAGGAGAGGGA 179
Query 180 GGAAGCGAAGGCTAAGTTAAACGATCCGGCGGAACAGGAGAGATTGAAGGCGATTGAGGA 239
||| ||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 GGAGGCGGAGGCTAAGTTGAACGATCCGGCGGAACAGGAGAGGTTGAAGGCGATTGAGGA 239
Query 240 AGAGGATGCGCGGAGGAGAGAAAAGGAGTTGAAGGACTTTgaggagagtgaaagagcttg 299
|||||| || ||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 240 AGAGGAGGCTCGGAGGAGAGAGAAGGAGTTGAAGGAGTTTGAGGAGAGTGAGAGAGCTTG 299
Query 300 gagagaagctatggagatcaagaggaagaaagaggaggaagaggaagcgaagcgggaaga 359
| |||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 300 GCGAGAGGCTATGGAGATTAAGAGGAAGAAAGAGGATGAAGAAGAAGCGAAGCGGGAAGA 359
Query 360 ggaagagaggcgttggaaggatctagaagagTTGAGAAAGCTTGAGGCTAGTGGGAATGA 419
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 GGAAGAGAGACGTTGGAAGGATCTAGAAGAATTGAGAAAGCTTGAGGCTAGTGGGAATGA 419
Query 420 TGAGTGTGGTGAGGATGAGGATGGTGAATATGAATATATCGAAGAAGGACCTCCAGAAAT 479
||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 TGAATGTGGCGAGGATGAGGATGGTGAATATGAATATATCGAAGAAGGGCCTCCAGAAAT 479
Query 480 TATATTCCAGGGAAATGAGATCATTCTCAAAAAGAACAAAGTGAGAGTTCCAAAGAAATC 539
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 TATATTCCAGGGAAATGAGATCATCCTCAAAAAGAACAAAGTGAGAGTTCCAAAGAAATC 539
Query 540 GGTTGTTCAGGTCGATGGACACGAGAGTTCCAATGCGGAGTTTGTTTTGCAGATTTCTGA 599
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 540 GGTTGTTCAGGTCGATGGAAACGAGAGTTCCAATGTGGAGTTTGTTTTGCAGATTTCTGA 599
Query 600 CAGGCCTACTTCAAATCCTCTACCTCCGGGAAGTGAAGCTTCAGCCAATTATCAGAATGT 659
||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 600 CAGGCCTACATCAAATCCTCTACCTCCGGGAAGTGAAGCCTGTGCCAATTATCAGAATGT 659
Query 660 TAGTTCTGCGCAACAGATATTGGAGAGTGTTGCACAAGAAGTACCCAACTTTGGAACTGA 719
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 TAGTTCTGCCCAACAGATTTTGGAGAGTGTTGCACAAGAAGTACCCAACTTTGGGACTGA 719
Query 720 GCAGGATAAAGCTCATTGTCCTTTCCATTTGAAAACTGGAGCTTGTCGGTTTGGCCAGCG 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 720 GCAGGATAAAGCTCATTGTCCTTTCCATTTGAAAACTGGAGCTTGTCGGTTTGGCCCGCG 779
Query 780 TTGCAGCAGAGTTCATTTCTACCCCAATAAATCGTGCACTCTACTTATGAAGAACATGTA 839
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGTAGCAGAGTTCATTTCTACCCCAATAAATCGTGCACTCTACTTATGAAGAACATGTA 839
Query 840 TAATGGTCCTGGTATTACTTGGGAACAGGATGAGGGGCTTGAGTATACAGATGAGGAGGC 899
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TAATGGTCCTGGTATTGCTTGGGAACAGGATGAGGGGCTTGAGTATACAGATGAGGAGGC 899
Query 900 TGAAC-TCTGTTATGAAGAATTTTATGAAGATGTTCATACAGAGTTCCTAAAGTATGGAG 958
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGAACAT-TGTTATGAAGAATTTTATGAAGATGTTCATACAGAGTTCCTAAAGTATGGAG 958
Query 959 AACTTGTTAATTTCAAGGTGTGTAGAAATGGCTCATTCCATTTGAAGGGCAATGTATATG 1018
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 959 AACTTATTAATTTCAAGGTGTGTAGAAATGGCTCATTCCACTTGAAGGGCAATGTATATG 1018
Query 1019 TCCACTACAGATCACTAGAATCAGCTATTCTTGCTTACCAGTCCATTAATGGTCGATACT 1078
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGCACTACAGATCATTAGAATCAGCTATTCTTGCTTACCAGTCCATTAATGGTCGATACT 1078
Query 1079 TTGCGGGTAAACAGGTGAATTGCGAGTTTGTCAACATCTCAAGATGGAAAGTTGCCATAT 1138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTGCTGGTAAACAGGTGAATTGCGAGTTTGTCAACATCTCAAGATGGAAAGTTGCCATAT 1138
Query 1139 GTGGGGAGTACATGAAGTCCAGGCTTAAAACTTGTTCTCGTGGATCTGCCTGCAATTTTA 1198
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1139 GTGGGGAGTACATGAAGTCCAGGCTTAAAACTTGTTCTCGTGGATCTGCTTGCAATTTTA 1198
Query 1199 TCCATTGTTTCCGAAATCCTGGTGGAGACTATGAATGGGCTGACCATGACAGACCACCTC 1258
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1199 TACATTGTTTCCGAAATCCTGGTGGAGACTACGAATGGGCTGACCAAGACAGACCACCTC 1258
Query 1259 CAAGATTCTGGATTCACAAAATGACCTCTTTATTTGGTTATTCAGATGAAAAGCACATGG 1318
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1259 CAAGATTCTGGATTCACAAAATGACCTCTTTATTTGGTTATTCTGATGAAAAGTACATGG 1318
Query 1319 AACATGAATCTTCAGGGTCGTTAAATGATTCAATATCAGATCTATCAACAGATTCACACA 1378
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1319 AACATGAATCTTCAGGGTCGTTAAATGATTCAAGATCAGATCTATCAACAGATTTACTCA 1378
Query 1379 GGCAACCTTCAAGAAGATCTAGATCGAGGGACCATGATCATGCTAATGTTGGATCTACGC 1438
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1379 GGCAACCTTCAAGAAGATCTAGATCGAGGAACCATGATCATGCGAATGTTGGATCTACGC 1438
Query 1439 CTTCTTATAGGAGCCGTAAATATCATGGTGATACTCAGGACAGCACTCGTGAAGAC-AAG 1497
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||
Sbjct 1439 CTTCTTATAGGAGCCGTAAATATCATGGTGATACTCGGGACAGCAGTCGTGAAGACGAA- 1497
Query 1498 CTTCGCAGGCATGCCGAGAACTGTCATGATGGTGATGACAGTCCGAGCAGAGATGGTAGT 1557
||| |||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 1498 CTTAGCAGGCATGCCGAGAACTGTCATGATGGAGATGACAGTCCTAGCAGAGACGGTAGT 1557
Query 1558 TTAGAGAGGGAGATGTATAAAGAGCGACGGTATGCTAAGGACACATTGCATCGTGATAGC 1617
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TTAGAGAGGGAGATGTGTAAAGAGCGACGGTATGCTAAGGACACATTGCATCGTGATAGC 1617
Query 1618 AGATGGTCTGAACACTCTCCTGGACATCGGGTGGGAAGGAAGAGAATCCATGGGAGGTAT 1677
|||||||||||||||||| |||||||||||||| |||||| ||||||||||| | |
Sbjct 1618 AGATGGTCTGAACACTCTTCTGGACATCGGGTGATAAGGAAAAGAATCCATGG----T-T 1672
Query 1678 TCTGATGATGATTCTGCTGATGGAGATGACTATGGTAGGAGAGGGACGGGTCACAAACGA 1737
|||||||||||||| ||||||| | | || || |||| || |||||||||| |
Sbjct 1673 -CTGATGATGATTCTCCTGATGG---T-A----GG-AG-AGAG--ACAGGTCACAAACAA 1719
Query 1738 AAACCCAGAAGAGGGACAGATTCAGGAGTACAAGAACAGATGGACAATGAAAAGGACAGA 1797
||| |||||||| ||||||||||| |||| ||||||||| ||| |||||||||||||
Sbjct 1720 AAATCCAGAAGACGGACAGATTCAAAAGTAGAAGAACAGACAGACGATGAAAAGGACAGG 1779
Query 1798 AAAACCCACAGGAGTTCAAGAAAACACAGCAGGGAAGGGTCATCAGCTGATAAAGAGGAG 1857
|||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 1780 AAAACCCACAGGAGTTCAAGAAAATACAGCAGGGAAAGGTCATCAGCTGATCAAGAGGAG 1839
Query 1858 GGTCATGAACATGATAGGGTTCATACAGTTTCTGACAAGTCGCATAGAGAAAGATCGAAG 1917
|||||||||||||||||||| |||||||||||| |||||||| |||||| |||| ||
Sbjct 1840 AGTCATGAACATGATAGGGTTTGTACAGTTTCTGATAAGTCGCAGAGAGAAGGATCAAAA 1899
Query 1918 CATCGACATGAAAGAAGTAGCTCAAGATATTCACACGAGGAAGATTCAACTGAGAGTAGA 1977
||| | ||||||||||| |||||||||||||| |||| |||||||||||||| ||||||
Sbjct 1900 CATGGGCATGAAAGAAGCAGCTCAAGATATTCGCACGCTGAAGATTCAACTGAAAGTAGA 1959
Query 1978 CATCATCAGCACAAAGAATCAGAC-----A---A--G-A-A----GA--G-AAG-----T 2013
||||||| ||| |||| ||||||| | | | | | || | ||| |
Sbjct 1960 CATCATCCGCATAAAGGATCAGACCTTCGAGTTAAAGGAGAAAATGACAGGAAGAGAAGT 2019
Query 2014 GTAGAGACTAGTCCCGTAGGATATCAGTCAGATAAAGATAGGGACAGAAGCAAACAGAGA 2073
||||||||||||||| || | |||||||||||||||| ||||||| ||| |||||||||
Sbjct 2020 GTAGAGACTAGTCCCAAAGAACATCAGTCAGATAAAGAAAGGGACAAAAGTAAACAGAGA 2079
Query 2074 CAGAGATACAAGAGCGATGATCCAGAGTCTGATCAAAGCAGGAAAGGAAAACGAC 2128
| |||||||||| | | ||||| || | ||| | ||||||||||||||||||||
Sbjct 2080 GATAGATACAAGACCCAGGATCCTGACTGTGACCGAAGCAGGAAAGGAAAACGAC 2134
Score = 195 bits (105), Expect = 2e-48
Identities = 128/139 (92%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 2137 GAGAATTCAGATAGAGAAACACACAAAGAGAGACGTCATCGCCATAGAAAAAGAAGACGG 2196
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2182 GAGAGTTCAGATAGAGAAACACACAAAGAGAGACCTCATCGCCATAGAAAAAGAAGACGG 2241
Query 2197 ACACAAAACTCAGACGACCAGAATCCTAAGGAAT-CAGAGGAAGTGGAAGAAGAGATTGA 2255
||||||||||||||||||||| |||| | | | |||||||||||||||||||||||
Sbjct 2242 TCACAAAACTCAGACGACCAGACTCCTGA-TTTTGCTGAGGAAGTGGAAGAAGAGATTGA 2300
Query 2256 GCGTTGGAGACCAGTGTGA 2274
|||||||||||||||||||
Sbjct 2301 GCGTTGGAGACCAGTGTGA 2319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85626870760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5