BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10330.1
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919808 jgi|Araly1|919808|scaffold_101089.1 2161 0.0
> Ahg919808 jgi|Araly1|919808|scaffold_101089.1
Length=1444
Score = 2161 bits (1170), Expect = 0.0
Identities = 1325/1400 (95%), Gaps = 10/1400 (1%)
Strand=Plus/Plus
Query 1 ATGCGTTGTACTTCCTTCTCAAGTTTCAGTTTGTCTCTTGAAGACGCACTTCATCTTCTC 60
|||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 21 ATGCGTTGTACTTCCTTCTCGAGTTTCAATTTTTCTCTTGAAGACGCACTTCATCTTCTC 80
Query 61 CAACGTTTCTTATACTCCTCAAACCAGATTAAGCAGATTCACACAGTTCT-TTTGACCAG 119
|||||||||||||||||||||||||||||||||||||||||| | || || ||| |||||
Sbjct 81 CAACGTTTCTTATACTCCTCAAACCAGATTAAGCAGATTCACGCTGTCCTCTTT-ACCAG 139
Query 120 CAACGCATTGGTTGCTTCGAGATGGAAGACGAAATGCGTCTACAACACTCTCATTCGATC 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 CAAAGCATTGGTTGCTTCGAGATGGAAGACGAAATGCGTCTACAACACTCTCATTCGATC 199
Query 180 CTATCTCACTACAGGAGAATACAAGACTTCTCTTGCTCTCTTCACTCATATGCTTGCAAG 239
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TTATCTCACTACAGGACAATACAAGACTTCTCTTGCTCTCTTCACTCATATGCTTGCAAG 259
Query 240 CCATGTCCAACCAAATAACCTCACTTTCCCTTCTCTGATTAAAGCAGCTTGCTCATCTTT 299
| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 260 CGAAATCCAACCAAATAACCTCACTTTCCCTTCACTGATTAAAGCAGCTTGCTCATCTTT 319
Query 300 CTCTGTTTC-TTATGGCGTTGCCTTACATGGCCAAGCTCTT-AAACGGGGTTTTCTATGG 357
||||||||| | | || ||||||||||||||||||||| || || | ||| | ||||||
Sbjct 320 CTCTGTTTCGTCA-GGTGTTGCCTTACATGGCCAAGCTTTTCGAA-GAGGTGTCCTATGG 377
Query 358 GATCCATTTGTTCAGACTTCTTTTGTCCGGTTCTATGGTGAAGTTGGTGATTTGGAGAGC 417
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 378 GACCCATTTGTTCAGACTTCTTTTGTTCGGTTCTATGGTGAAGTTGGTGATTTGAAGAGC 437
Query 418 TCGAGGAAGATGTTTGATGATATTTTAAACCCTTGTGTTGTAGCTTGTAACAGTTTGCTT 477
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 438 TCGAGGAAGATGTTTGATGATATTTTAGACCCTTGTGTTGTAGCTTGTAACAGTTTGCTT 497
Query 478 GACGCTTGTGGAAGAAACGGAGAGATGGATTATGCTTTCGAG-TATTTTCAGAGAATGCC 536
|||||||||||| |||||||||||||| ||| |||||||||| || ||||||||||||||
Sbjct 498 GACGCTTGTGGACGAAACGGAGAGATGAATTCTGCTTTCGAGTTA-TTTCAGAGAATGCC 556
Query 537 TGTAACTGATGTGGTCTCTTGGACCACTGTTATCAACGGGTTTAGTAAGAAAGGGTTACA 596
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 557 TGTAACTGATGTGGTCTCTTGGACCACTGTTATCAACGGGTTTAGTAAGAATGGGTTTCA 616
Query 597 CGCCAAAGCTTTAATGGTTTTTGGTGAGATGATACAGAATGAGCGTGCGGTAATAACACC 656
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 617 CGCCAAAGCTTTAATGGTTTTTGGTGAGATGATACAGAATCAGCGTGCGGTAATAACACC 676
Query 657 TAACGAGGCTACTTTCGTAAGTGTACTTTCTTCATGTGCTAATTTTGATCAAGGAGGTAT 716
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GAATGAGGCTACTTTCGTTTGTGTACTTTCTTCATGTGCTAATTTTGATCAAGGAGGTAT 736
Query 717 TCGACTGGGGAAGCAGATTCATGGATATGTTATGA-GTAAAGAGATCATTCTTACTACAA 775
|||| ||||||||||||||||||||||| |||||| | ||||||||||| |||||||| |
Sbjct 737 TCGATTGGGGAAGCAGATTCATGGATATATTATGACG-AAAGAGATCATCCTTACTACTA 795
Query 776 CTTTGGGTACTGCTTTGCTTGATATGTATGGAAAAGCCGGTGACTTGGAGATGGCATTGA 835
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 796 CTTTGGGTACTGCTTTGCTTGATATGTATGGAAAAGCTGGTGACTTGGAGATGGCATTGA 855
Query 836 CCATTTTTGATCAAATTCGTGATAAGAAAGTTTGCGCTTGGAATGCGATAATATCAGCTC 895
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 856 CCATTTTCCATCAAATTCGTGATAAGAAAGTTTGCGCTTGGAATGCAATAATATCAGCTC 915
Query 896 TTGCCTCCAATGGTAGACCTAAGCAAGCGCTGGAGATGTTTGAGATGATGAAATCAAGCT 955
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 TTGCCTCCAATGGTAGACCTAAGCAAGCGCTGGAGATGTTTGAGATGATGAAATCAAGCA 975
Query 956 ATGTGCATCCGAATGGGATCACTTTACTTGCAATACTCACGGCTTGTGCTCGATCTAAAC 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 976 ATGTGCATCCGAATGGGATCACTTTACTTGCAATACTCACGGCTTGTGCTCGATATAAAC 1035
Query 1016 TTGTGGATTTAGGTATTCAGTTGTTCTCTTCTATATGTAGCGAGTACAAGATCATTCCAA 1075
||||||| |||||||| |||||||||||||| |||||||| |||| ||||||||||||||
Sbjct 1036 TTGTGGACTTAGGTATCCAGTTGTTCTCTTCCATATGTAGTGAGTTCAAGATCATTCCAA 1095
Query 1076 CATCAGAACATTACGGTTGCGTTGTTGATCTCATTGGCAGAGCTGGACTATTGGTTGACG 1135
||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1096 CATCAGAGCATTACGGTTGCATTGTTGATCTCATAGGCAGAGCTGGACTATTGGTTGACG 1155
Query 1136 CAGCCAATTTCATTCAAAGTTTGCCCTTCGAGCCTGATGCTTCTGTTCTCGGAGCTCTTT 1195
| |||||||||||| ||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 1156 CTGCCAATTTCATTAAAAATTTGCCATTTGAGCCTGATGCTTCTGTTCTCGGAGCTCTTT 1215
Query 1196 TGGGCGCTTGCAAGATTCATGAGAATACTGAATTAGGAAATACAGTAGGTAAACAGCTTA 1255
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1216 TGGGCGCTTGCAAGATTCATGAGAATGCTGAATTAGGAAATAAAGTAGGTAAACAGCTTA 1275
Query 1256 TTGGACTGCAACCTCAACACTGTGGCCAGTATGTGGCATTGTCGACGTTCAATGCTTTGG 1315
||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1276 TTGTACTGCAACCTCAACACTGTGGCCAGTATGTGGCATTGTCGATGTTAAATGCTTTGG 1335
Query 1316 ATAGCAATTGGTCAGAAGCAGAAAAAATGAGGAAAGCCATGATAGAAGCTGGAATTCGGA 1375
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1336 ATAGCAATTGGTCAGAAGCAGAACAGATGAGGAAAGCCATGATAGAAGCTGGAATTCGGA 1395
Query 1376 AAATCCCTGCTTACAGTGTG 1395
||||||||||||| ||||||
Sbjct 1396 AAATCCCTGCTTATAGTGTG 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52488357610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5