BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10340.1
Length=1980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471145 jgi|Araly1|471145|fgenesh2_kg.1__1099__AT1G10340.2 1742 0.0
> Ahg471145 jgi|Araly1|471145|fgenesh2_kg.1__1099__AT1G10340.2
Length=1861
Score = 1742 bits (943), Expect = 0.0
Identities = 1114/1193 (93%), Gaps = 25/1193 (2%)
Strand=Plus/Plus
Query 66 TTTGCTCTAGATTTCTTGAGAAAAGATGCAGCCGATCTTCCATGCGATCCTTAAAAATGA 125
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTGCTCTAGATATCTTGAGAAAAGATGCAGCCGATCTTCCATGCGATCCTTAAAAATGA 60
Query 126 CCTTCCAGCTTTTTTAGAGTTGGTAGAAGATAGTGAATCGTC-TCTGGAGGAGAGAAACG 184
||||||||||||||| ||||||||||| || ||||| ||||| | |||||||||||||||
Sbjct 61 CCTTCCAGCTTTTTTGGAGTTGGTAGAGGAGAGTGAGTCGTCGT-TGGAGGAGAGAAACG 119
Query 185 AGGAAGAACACTTGAACAACACGGTTTTGCACATGGCTGCAAAGTTTGGTCACCGAGAAC 244
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 AGGAAGAACGCTTGAACAACACGGTTTTGCACATGGCTGCAAAGCTTGGTCACCGAGAAC 179
Query 245 TCGTCTCCAAGATTATTGAGCTCCGACCTTCCCTCGTGTCTTCCCGCAACGCATACAGAA 304
||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||
Sbjct 180 TCGTCTCCAAGATTATTGAGCTCCGTCCTTCCCTCGTCTGTTCCCGCAACGCATATGGAA 239
Query 305 ACACACCTTTGCATCTTGCTGCTATCCTTGGAGATGTAAACATAGTTATGCAGATGTTAG 364
||||||||||||| ||||||||| |||| ||||| |||||||| ||| ||||||||||||
Sbjct 240 ACACACCTTTGCACCTTGCTGCTGTCCTGGGAGACGTAAACATCGTTGTGCAGATGTTAG 299
Query 365 AGACTGGATTGGAAGTGTGTTCTGCACGCAATATCAACAACCACACACCACTCCACTTGG 424
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 AGACTGGATTGGAAGTGTGTTCTGCACGCAATATCAACAACCACACACCACTCAACTTGG 359
Query 425 CTTGCCGTAGCAATTCCATAGAGGCTGCCAGACTCATCGCGGAAAAGACACAATCAATTG 484
||||||||||| |||| |||||||||||||||||| | |||||||||||||||||||| |
Sbjct 360 CTTGCCGTAGCGATTCTATAGAGGCTGCCAGACTCGTTGCGGAAAAGACACAATCAATCG 419
Query 485 GCCTCGGTGAACTC-ATTCTCGCCATATCAAGTGGATCCACTAGTATCGTAGGGACTATA 543
|||| | ||||||| ||| ||||| ||||||| |||| | | | | || ||| ||||
Sbjct 420 GCCTTGATGAACTCAATT-TCGCCCTATCAAGAGGAT-C-C----A-C-TA-GGATTATA 469
Query 544 CTGGAGAGATTCCCAGACCTAGCTAGGGAAGAAGCTTGGGTGGTTGAAGACGGCTCACAA 603
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 470 CTGGAGAGATTTCCAGACCTAGCTAGAGAAGAAGCTTGGGTGGTTGAAGACGGCTCACAA 529
Query 604 TCAACGCTACTGCATCATGCGTGTGATAAGGGAGACTTTGAACTGACAACTATATTGTTA 663
||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||
Sbjct 530 TCAACGCTACTGCATCATGCGTGTGATAAAAGCGACTTTGAACTGACAAGTATATTGTTA 589
Query 664 GGGCTCGATCAAGGATTAGAAGAAGCACTTAACCCCAATGGTTTATCACCTCTGCATCTT 723
|||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||
Sbjct 590 GGGCTCGATCAAGGATTAGAAGAAGCTCTTAACAGCAAAGGTTTATCACCTCTGCATCTT 649
Query 724 GCGGTCCTCAGAGGCTCGGTTGTGATCCTGGAGGAGTTCTTGGACAAGGTTCCATTGTCT 783
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 650 GCGGTCGTCAGAGGCTCGGTTGTAATCCTGGAGGAGTTCTTGGACAAGGTTCCATTGTCT 709
Query 784 TTCAGCTCAATCACGCCGTCGAAAGAGACAGTCTTTCATCTCGCTGCTCGAAACAAAAAT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TTCAGCTCAATCACGCCGTCGAAAGAGACAGTCTTTCATCTCGCTGCTCGAAACAAAAAT 769
Query 844 ATGGATGCCTTTGTTTTTATGGCAGAGAGTTTGGGAATTAACAGCCAAATTCTTCTACAG 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 ATGGATGCCTTTGTTTTTATGGCAGAGAGTTTGGGAATTAACAGCCAAATTCTTCTACAG 829
Query 904 CAAACCGATGAAAGTGGCAACACTGTCTTACATATTGCTGCATCCGTCTCTTTTGATGCT 963
||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 830 CAAACAGATGAAAGTGGCAACACTGTCTTACATATTGCTGCATCCGTCGCTTGTGATGCT 889
Query 964 CCTCTTATACGTTACATTGTTGGTAAGAATATAGTAGATATCACGTCCAAGAACAAGATG 1023
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 890 CCTCTTATACGTTACATTGTTGGTAAGAATATAGTAGATATCATGTACAAGAACAAGATG 949
Query 1024 GGTTTTGAAGCTTTTCAACTTCTCCCTCGAGAAGCCCAAGACTTTGAGTTGTTATCAAGG 1083
||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 950 GGTTTCGAAGCTTTTCAACTTCTCCCTCGAGAGGCCCAAGACTTTGAGTTGTTATTAAGG 1009
Query 1084 TGGCTGAGATTTGGTACCGAGACTTCACAAGAGCTGGATTCTGAGAACAATGTAGAACAA 1143
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1010 TGGCTGAGATTTGGCACCGAGACTTTACAAGAGCTGGATTCTGAGAACAATGTAGAACA- 1068
Query 1144 CACGAAGGCTCTCAAGAGGTCGAGGTAATACGGTTGCTAAGGA-TTATAGGAATAAACAC 1202
| ||| ||||||||||| ||||||||||||||||||| || | ||||||||||||||||
Sbjct 1069 C--GAAAGCTCTCAAGAGATCGAGGTAATACGGTTGCTTAG-ACTTATAGGAATAAACAC 1125
Query 1203 ATCAGAGATAGCAGAGAGAAAGAGAAGCAAGGAACAGGAAGTGGAAAGAGGTC 1255
|||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1126 ATCAGAGATAGCAGAGAGAAAGAGAA--A-----CAGGAAGTGGAAAGAGGTC 1171
Score = 898 bits (486), Expect = 0.0
Identities = 631/698 (90%), Gaps = 22/698 (3%)
Strand=Plus/Plus
Query 1297 AATGCAAGAAATACGATTGCTATAGTGGCAGTCTTGATTGCTTCAGTTGCTTATGCCGGT 1356
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1172 AATGCAAGAAATACGATTGCGATAGTGGCAGTCTTGATTGCTTCAGTTGCTTATGCCGGT 1231
Query 1357 GGGATAAACCCTCCGGGGGGCGTCTACCAAGACGGGCCATGGAGAGGGAAATCCTTAGTG 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 GGGATAAACCCTCCGGGGGGCGTCTACCAAGACGGGCCATGGAGAGGGAAATCCTTAGTG 1291
Query 1417 GGGAAAACAACGGCGTTTAAGGTCTTTGCGATATGCAACAACATCGCACTGTTCACGTCC 1476
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 GGAAAAACGACGGCGTTTAAGGTCTTTGCGATATGCAACAACATCGCACTGTTCACGTCC 1351
Query 1477 TTGGGCATCGTTATTCTTCTTGTTAGCATCATACCTTACAAGAGGAAACCCTTAAAGAGA 1536
||| |||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |
Sbjct 1352 TTGTGCATCGTTATTCTTCTCGTTAGCATTATACCTTACAAGAGGAAACCCTTGAAGAAA 1411
Query 1537 TTATTGGTGGCCACGCATAGGATGATGTGGGTTTCTGTAGGTTTCATGGCGACGGCTTAT 1596
||| |||| |||||||| || |||||||||||||||||||| |||||||| || ||||||
Sbjct 1412 TTACTGGTTGCCACGCACAGAATGATGTGGGTTTCTGTAGGGTTCATGGCAACAGCTTAT 1471
Query 1597 ATAGCGGCGTCTTGGGTGACCATACCGCATTATC-ATGGAACACAATGGTTATTTCCAGC 1655
|| ||||||||||||||||||||||||||||| | ||||||| | |||||||||||||||
Sbjct 1472 ATTGCGGCGTCTTGGGTGACCATACCGCATTA-CGATGGAACCCGATGGTTATTTCCAGC 1530
Query 1656 AATTGTAGCCGTTGCTGGTGGAGCGTTGACCGTACTCTTTTTCTATCTCGGAGTTGAGAC 1715
|||| | ||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1531 AATTATCGCCGTTGCTGGTGGAGCGTTGACGGTACTCTTTTCCTATCTCGGAGTTGAGAC 1590
Query 1716 CATCGGTCATTGGTTTAAGAAGATGAATCGTGTAGGGGATAATATACCTTCCTTTGCAA- 1774
||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||
Sbjct 1591 AATCGGTCATTGGTTTAAGAAGATGAATCGTGTAGGAGATA-TA--CCTTCCTTCGCAAA 1647
Query 1775 GAACCAGTTCAGATTTAGCCGTCTCCGGAAAATCAGGCTATTTCACCTATTAAGAAAAAC 1834
|| |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 1648 GA-CCAGTTCAGATTTAGCTGCCTCCGGAATATCAGGCTATTTCACCTATTAAGAAAAAC 1706
Query 1835 TGGTTTTC-TAATTTCCCTGTAACCT-GTGTAAT-TGTGTATGTGTAAAGTGTTGGATTA 1891
|| ||||| |||||| ||||||| | || | |||| || ||| |||||||||||
Sbjct 1707 TG-TTTTCCTAATTTTCCTGTAAAATAGTCCCACCTGTGCATA-GTAG-GTGTTGGATTA 1763
Query 1892 AGTCTTTCTTAGGAACTGTGTTATCTTGTAAAAAGAGACATTGT--TT--TGTT-----C 1942
||| ||||||||||||||||| | ||||||| |||||||||| || |||| |
Sbjct 1764 AGTTTTTCTTAGGAACTGTGTAACCTTGTAAGGAGAGACATTGAGATTCCTGTTTTGTGC 1823
Query 1943 TTCAAGTCAGTGAGTGAAATGTCTCGTTTGCTTTCTCC 1980
||||| ||||||||||||||||||||||||||||||||
Sbjct 1824 TTCAAATCAGTGAGTGAAATGTCTCGTTTGCTTTCTCC 1861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74428338730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5