BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10350.1
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471147 jgi|Araly1|471147|fgenesh2_kg.1__1101__AT1G10350.1 1991 0.0
> Ahg471147 jgi|Araly1|471147|fgenesh2_kg.1__1101__AT1G10350.1
Length=1393
Score = 1991 bits (1078), Expect = 0.0
Identities = 1318/1427 (92%), Gaps = 43/1427 (3%)
Strand=Plus/Plus
Query 13 TTTTTCTCTCTTCCAATTTCAGATTTTACTGGCAAAATATCTCGAATCCGATTCCTTTTT 72
||||| ||| |||||||||||||||||||| | |||| ||||||||||||||||| || |
Sbjct 1 TTTTTTTCTATTCCAATTTCAGATTTTACTCGAAAAAAATCTCGAATCCGATTCC-TTCT 59
Query 73 TCTCTTCTGCAATCTCTTTGAAATCTCAAGCTTCTCTTCAAAATTTCGATTACAGCTGAA 132
||||||| ||||||||| ||||||||||| || ||||||||||||| |||||| |
Sbjct 60 TCTCTTCCGCAATCTCTGTGAAATCTCAA-----ACTACAAAATTTCGATTTCAGCTG-A 113
Query 133 GATTCTCTCGATTTTCTGGTTTTGAC----ttttttttt-GTTTGGTTTGGTGAAAGATT 187
||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct 114 GATTCTCTCTATTTTGTGGTTTTGACTTTTTTTTTTTTTATTTTGGTTTGGTGAAAGATT 173
Query 188 TGGATCAAATGGGGGTGGATTACTACAATGTTCTGAAAGTGAATCGAAATGCTAACGAAG 247
|||||| ||||||||| |||||||||||||| || |||||||||||||| ||||||||||
Sbjct 174 TGGATC-AATGGGGGTAGATTACTACAATGTGCTAAAAGTGAATCGAAACGCTAACGAAG 232
Query 248 ATGATCTGAAGAAGTCTTACCGGCGAATGGCTATGAAATGGCACCCTGACAAAAACCCTA 307
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 233 ATGATCTGAAGAAGTCTTACCGGAGAATGGCTATGAAATGGCACCCTGACAAAAACCCTA 292
Query 308 CGAGCAAGAAAGAAGCTGAAGCTAAGTTCAAGCAGATCTCTGAAGCTTACGACGTCTTGA 367
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 293 CGACCAAGAAAGAAGCTGAAGCTAAGTTCAAGCAGATCTCTGAAGCTTATGACGTTTTGA 352
Query 368 GCGATCCTCAGAGACGTCAGATCTACGATCAGTACGGAGAAGAAGGTCTTAAATCCACCG 427
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 353 GCGATCCTCAGAGACGTCAGATCTACGATCAGTACGGTGAAGAAGGTCTTAAATCCACCG 412
Query 428 ATTTACCTACTGCGGCGGAGACGGCGGCGCATCAGCAGCAGCGGAGCTACTCTTCTAGCA 487
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 413 ATTTACCTACTGCGGCGGAGACAGCGGCGCATCAGCAGCAGCGGAGCTACTCTTCTAGCA 472
Query 488 ACTCTGAGTTTCGGTATTATCCGCGTGATGCTGAAGATATCTTTGCTGAGTTTTTCGGCG 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 ACTCTGAGTTTCGGTATTATCCGCGTGATGCTGAAGATATCTTTGCTGAGTTTTTCGGCG 532
Query 548 AATCCGGTGATGCTTTTGGCGGAGGGAGTAGCGGAAGGACACGTGGAGATGGCGGTGATG 607
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 533 AATCCGGAGATACTTTTGGCGGAGGGAGTAGCGGAAGGACACGTGGAGATGGCGGTGACG 592
Query 608 GTGGCGGTCGGAGATTTAAAAGTGCAGAAGCAGGGAGCCAGGCTAATAGAAAGACGCCGC 667
||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 593 GTGGCGGCCGGAGATTTAAAAGTGCAGAAGCAGGGAGCCAGGCTAATAG--A-A------ 643
Query 668 CGACGAACaaaaaaaCGACGCCGCCGGCGAATAGGAAGGCTCCGGCTATTGAGAGTAAAT 727
| | || | ||||||||||||||||||| || |||||||||||||||||||
Sbjct 644 --A-G-AC------TC--CGCCGCCGGCGAATAGGAAAGCGCCGGCTATTGAGAGTAAAT 691
Query 728 TGGCTTGCACATTGGAGGAGCTCTACAAAGGTGCAAAGAAGAAGATGCGAATTTCTCGCG 787
||||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||||
Sbjct 692 TGGCTTGCACACTGGAGGAGCTCTACAAAGGTGCCAGGAAGAAGATGCGCATTTCTCGCG 751
Query 788 TTGTTCCTGATGATTTTGGAAAGCCAAAGACAGTCCAAGAGATATTGAAGATAGACATAA 847
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 752 TTGTTCCCGATGATTTTGGAAAGCCAAAGACTGTCCAAGAGATTTTGAAGATAGACATAA 811
Query 848 AACCAGGTTGGAAGAAAGGCACAAAGATCACTTTTCCAGAGAAAGGCAACCAAGAACCTG 907
||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 812 AACCAGGTTGGAAGAGAGGCACAAAGATAACTTTCCCAGAGAAAGGCAACCAAGAACCTG 871
Query 908 GTGTCACTCCTGCGGATCTTATATTCGTGGTTGACGAGAAACCGCATTCGGTATTCAAGA 967
|||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 872 GTGTCACTCCCGCGGATCTCATATTCGTGGTAGACGAGAAACCGCATTCGGTATTCAAAA 931
Query 968 GAGACGGTAACGATCTGATTCTCGAGAAGAAAGTCTCTCTTATAGATGCTTTAACCGGTC 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 932 GAGACGGTAACGATCTGATTCTCGAGAAGAAAGTCTCTCTTATAGATGCTTTAACTGGCC 991
Query 1028 TCACCATTAGCGTAACGACTCTAGACGGGAGGAGCCTAACTATCCCGGTGCTGGATATCG 1087
|||||||||||||||| |||||||||||||||| |||||| |||||||| ||||||||||
Sbjct 992 TCACCATTAGCGTAACCACTCTAGACGGGAGGAACCTAACGATCCCGGTTCTGGATATCG 1051
Query 1088 TAAAACCGGGTCAGGAGATTGTGATCCCGAATGAGGGAATGCCTACTAAAGACCCTTTGA 1147
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 1052 TAAAACCGGGTCAGGAGATTGTGATTCCAAATGAAGGAATGCCTACTAAAGACCCTTTGA 1111
Query 1148 AGAGAGGAGACCTTAGAGTTACCTTTGAAATCTTGTTCCCGTCAAGGCTAACGTCAGAAC 1207
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1112 AGAGAGGAGACCTTAGAGTCACCTTTGAGATCTTGTTCCCGTCAAGGCTAACGTCAGAAC 1171
Query 1208 AGAAGAATGACCTCAAGAGAGTTCTTGGTGGAAGCTGATGAGTTGACGTTTAGTTTTCAA 1267
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1172 AGAAGAATGACCTCAAGAGAGTTCTTGGTGGAAGCTGATGAGTTGGCATTTAGTTTTCAA 1231
Query 1268 GTAAGCTATTGATCTTCTTTAACAACGGATTCCACAGGAAGTTGCTAGTCATTTGAGTGT 1327
|||||||||||||||||||||||||||||||| |||||||| || | ||| || |||||
Sbjct 1232 GTAAGCTATTGATCTTCTTTAACAACGGATTCTACAGGAAGCTG--A-TCAATTCAGTGT 1288
Query 1328 ACATACATTTACGTTTTTCCTTTGTAAACTT---GTGTTATAAGAAAAACAAGAAAACCC 1384
|||||||| |||||||||||||||||||||| ||||||||||||| || | |||||||
Sbjct 1289 ACATACATGTACGTTTTTCCTTTGTAAACTTCTTGTGTTATAAGAAAGACTA-AAAACCC 1347
Query 1385 AAATCGAATAAGACTGGATATGCGG-GATCTAATAATGGCTGCCACA 1430
|||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1348 GAATCGAATAAGACTGGATAT-CGGAGATCTAATAATGGCTGCCACA 1393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53592974715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5