BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10360.1
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471148 jgi|Araly1|471148|fgenesh2_kg.1__1102__AT1G10360.1 1136 0.0
> Ahg471148 jgi|Araly1|471148|fgenesh2_kg.1__1102__AT1G10360.1
Length=729
Score = 1136 bits (615), Expect = 0.0
Identities = 691/729 (95%), Gaps = 0/729 (0%)
Strand=Plus/Plus
Query 24 TTCTTAATCTCCGGGATAAAATGGCGACCGAGGACGTGAAGCTGATCGGCTCATGGGCGA 83
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1 TTCTTAATCTCCGGGATAAAATGGCGACTGACGACGTGAAGCTGATCGGCTCATGGGCGA 60
Query 84 GTGTTTACGTCATGAGGGCGAGGATCGCTCTCCACCTCAAATCTATTAGCTACGAATTCC 143
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 GTGTTTTCGTCATGAGGGCGAGGATTGCTCTCCACCTCAAATCTATTAGCTACGAATTCC 120
Query 144 TTCAGGAGACGTATGGTTCAAAGAGCGAATTGCTCCTCAAATCAAACCCGGTTCACAAGA 203
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCAGGAGACGTTTGGTTCAAAGAGCGAATTGCTCCTCAAATCAAACCCGGTTCACAAGA 180
Query 204 AGATGCCGGTTCTGATTCACGCTGACAAACCGGTGTGCGAGTCCAACATCATCGTTCATT 263
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 AGATGCCGGTTCTGATTCACGCTGACAAACCGGTGTGCGAGTCCAACATCATCGTTCAGT 240
Query 264 ATATCGACGAGGCTTGGAACTCTTCTGGACCTTCCATTCTCCCGTCCCATCCATACGACC 323
| |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 241 ACATCGACGAGGCTTGGAACTCATCTGGACCGTCCATTCTCCCGTCCCATCCCTACGACC 300
Query 324 GGGCCATTGCTCGGTTTTGGGCTGCCTACATAGACGATCAGTGGTTTATCTCTGTGAGAA 383
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GGGCCATCGCTCGGTTTTGGGCTGCCTACATAGACGATCAGTGGTTTATCTCTCTGAGAA 360
Query 384 GTATCCTAACAGCTCAAGGAGACGAAGAGAAGAAAGCAGCCATAGCTCAAGTTGAAGAAA 443
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 361 GTATCCTAACAGCTCAAGGAGAAGAAGAGAAGAATGCAGCCATAGCTCAAGTCGAAGAAA 420
Query 444 GGACCAAGCTTCTGGAGAAAGCATTCAACGATTGTAGCCAAGGAAAACCGTTCTTCAACG 503
||||| || |||||||||||||||||| |||||| ||| ||||||||||||||||||| |
Sbjct 421 GGACCGAGATTCTGGAGAAAGCATTCATCGATTGCAGCAAAGGAAAACCGTTCTTCAATG 480
Query 504 GTGACCATATCGGTTACCTCGACATTGCCTTGGGGAGCTTCTTAGGTTGGTGGAGAGTCG 563
||||||||||||||||||||||||||||| | || || ||||| |||||||||||||| |
Sbjct 481 GTGACCATATCGGTTACCTCGACATTGCCCTCGGAAGTTTCTTGGGTTGGTGGAGAGTTG 540
Query 564 TCGAGTTGGATGCCAATCATAAATTTCTTGATGAGACCAAAACTCCCTCTCTAGTCAAAT 623
|||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 541 TCGAGTTGGATGCCAATCATAAATTTCTTGATGAGACCAAGGCTCCTTCTCTAGCCAAAT 600
Query 624 GGGCAGAGCGGTTCTGTGATGATCCCGCTGTGAAACCTATAATGCCCGAGATTACAAAGC 683
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 601 GGGCAGAGCGGTTCTGTGATGACCCCGCTGTGAAACCTATAATGCCCGAGATTACAAAGC 660
Query 684 TCGCTGAATTCGCAAGGAAGCTCTTTCCTAAGCGGCAAGCATAAACTGGATTACTAGGAT 743
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||
Sbjct 661 TCGCAGAATTCGCAAGGAAGCTCTTTCCTAAGCCGCAAGCATAAACTGGTTTAGTAGGAT 720
Query 744 GTAAGTTAT 752
| |||||||
Sbjct 721 GCAAGTTAT 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33624412794
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5