BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10370.1
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919812 jgi|Araly1|919812|scaffold_101093.1 1188 0.0
Ahg471148 jgi|Araly1|471148|fgenesh2_kg.1__1102__AT1G10360.1 638 0.0
Ahg936976 jgi|Araly1|936976|scaffold_501167.1 65.8 6e-10
> Ahg919812 jgi|Araly1|919812|scaffold_101093.1
Length=726
Score = 1188 bits (643), Expect = 0.0
Identities = 684/704 (97%), Gaps = 1/704 (0%)
Strand=Plus/Plus
Query 67 TTTGGAT-TTTGAAGAGAAAATGGCAAGCAGCGACGTGAAGCTGATCGGTGCATGGGCGA 125
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTGGATCTTAGAAGAGAAAATGGCAAGCAGCGACGTGAAGCTGATCGGTGCATGGGCGA 60
Query 126 GTCCCTTTGTGATGAGGCCGAGGATTGCTCTAAACCTCAAGTCTGTCCCCTACGAGTTCC 185
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCCCCTTTGTGATGAGGCCGAGGATTGCTCTAAACCTCAAGTCTGTCCCCTACGAGTTCC 120
Query 186 TCCAAGAGACGTTTGGGTCTAAGAGCGAGTTGCTTCTTAAATCAAACCCGGTTCACAAGA 245
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCAGGAGACGTTTGGGTCTAAGAGCGAGTTGCTTCTTAAATCAAACCCGGTTCACAAGA 180
Query 246 AGATCCCGGTTCTGCTTCATGCTGATAAACCGGTGAGTGAGTCCAACATCATCGTTGAGT 305
|||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AGATTCCGGTTCTTCTTCATGCTGATAAACCGGTGTGTGAGTCCAACATCATCGTTGAGT 240
Query 306 ATATCGATGACACTTGGAGCTCATCTGGACCGTCCATTCTCCCTTCCGATCCTTACGATC 365
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 ATATCGATGACACTTGGAGCTCATCTGGACCGTCCATACTCCCTTCCGATCCTTACGATC 300
Query 366 GGGCCATGGCTCGGTTCTGGGCTGCTTACATCGACGAAAAGTGGTTTGTCGCTCTAAGAG 425
|||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 301 GGGCAATGGCTCGGTTCTGGGCTGCTTACATTGACGAAAAATGGTTTGTCGCTCTAAGAA 360
Query 426 GTTTCCTAAAAGCCGGAGGAGAAGAAGAGAAGAAAGCTGTGATAGCTCAACTAGAAGAAG 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTTCCTAAAAGCCGGAGGAGAAGAAGAGAAGAAAGCTGTGATAGCTCAACTAGAAGAAG 420
Query 486 GGAATGCGTTTCTGGAGAAGGCGTTCATTGATTGCAGCAAAGGAAAACCGTTCTTCAACG 545
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 421 GGAATGCGTTTCTAGAGAAGGCCTTCATCGATTGCAGCAAAGGAAAACCGTTCTTCAACG 480
Query 546 GTGACAACATCGGTTACCTCGACATTGCTCTCGGGTGCTTCTTGGCTTGGTTGAGAGTCA 605
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 GTGACAACATCGGTTACCTAGACATTGCTCTTGGGTGCTTCTTGGCTTGGTTGAGAGTCA 540
Query 606 CCGAGTTAGCAGTCAGCTATAAAATTCTTGATGAGGCCAAGACACCTTCTTTGTCCAAAT 665
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCGAGTTAGCAGTCAGCCATAAAATTCTTGATGAGGCCAAGACACCTTCTTTGTCCAAAT 600
Query 666 GGGCTGAGAATTTCTGTAATGATCCCGCTGTAAAACCTGTCATGCCCGAGACTGCAAAGC 725
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 601 GGGCTGAGAATTTCTGTAATGATCCCGCTGTAAAACCTGTCATGCCAGAGACTGCCAAGC 660
Query 726 TTGCTGAATTCGCAAAGAAGATCTTTCCTAAGCCGCAGGCCTAA 769
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTGCTGAATTCGCAAAGAAGATCTTTCCTAAGCCGCAGGCCTAA 704
> Ahg471148 jgi|Araly1|471148|fgenesh2_kg.1__1102__AT1G10360.1
Length=729
Score = 638 bits (345), Expect = 0.0
Identities = 580/694 (84%), Gaps = 14/694 (2%)
Strand=Plus/Plus
Query 83 AAAATGGCAAGCAG-CGACGTGAAGCTGATCGG-TGCATGGGCGAGTCCCTTT-GTGATG 139
|||||||| | | | |||||||||||||||||| | ||||||||||| ||| || |||
Sbjct 18 AAAATGGCGA-CTGACGACGTGAAGCTGATCGGCT-CATGGGCGAGT-GTTTTCGTCATG 74
Query 140 AGGCCGAGGATTGCTCTAAACCTCAAGTCTGTCCCCTACGAGTTCCTCCAAGAGACGTTT 199
||| ||||||||||||| ||||||| ||| | |||||| |||||||| |||||||||
Sbjct 75 AGGGCGAGGATTGCTCTCCACCTCAAATCTATTAGCTACGAATTCCTCCAGGAGACGTTT 134
Query 200 GGGTCTAAGAGCGAGTTGCTTCTTAAATCAAACCCGGTTCACAAGAAGATCCCGGTTCTG 259
|| || |||||||| ||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 135 GGTTCAAAGAGCGAATTGCTCCTCAAATCAAACCCGGTTCACAAGAAGATGCCGGTTCTG 194
Query 260 CTTCATGCTGATAAACCGGTGAGTGAGTCCAACATCATCGTTGAGTATATCGATGACACT 319
|||| ||||| ||||||||| | |||||||||||||||||| |||| ||||| || ||
Sbjct 195 ATTCACGCTGACAAACCGGTGTGCGAGTCCAACATCATCGTTCAGTACATCGACGAGGCT 254
Query 320 TGGAGCTCATCTGGACCGTCCATTCTCCCTTCCGATCCTTACGATCGGGCCATGGCTCGG 379
|||| |||||||||||||||||||||||| ||| |||| ||||| |||||||| ||||||
Sbjct 255 TGGAACTCATCTGGACCGTCCATTCTCCCGTCCCATCCCTACGACCGGGCCATCGCTCGG 314
Query 380 TTCTGGGCTGCTTACATCGACGAAAAGTGGTTTGTCGCTCTAAGAGGTTTCCTAAAAGC- 438
|| |||||||| ||||| ||||| |||||||| || |||| ||| || |||||| |||
Sbjct 315 TTTTGGGCTGCCTACATAGACGATCAGTGGTTTATCTCTCTGAGAAGTATCCTAACAGCT 374
Query 439 CGGAGGAGAAGAAGAGAAGAAAGCTGTGATAGCTCAACTAGAAGAAGGGAATGCGTTTCT 498
| |||||||||||||||||| || | ||||||||| | |||||| ||| | | ||||
Sbjct 375 C-AAGGAGAAGAAGAGAAGAATGCAGCCATAGCTCAAGTCGAAGAAAGGACCGAGATTCT 433
Query 499 GGAGAAGGCGTTCATTGATTGCAGCAAAGGAAAACCGTTCTTCAACGGTGACAACATCGG 558
|||||| || ||||| ||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 434 GGAGAAAGCATTCATCGATTGCAGCAAAGGAAAACCGTTCTTCAATGGTGACCATATCGG 493
Query 559 TTACCTCGACATTGCTCTCGGGTGCTTCTTGGCTTGGTTGAGAGTCACCGAGTTAGCA-G 617
||||||||||||||| ||||| | ||||||| ||||| |||||| |||||| | | |
Sbjct 494 TTACCTCGACATTGCCCTCGGAAGTTTCTTGGGTTGGTGGAGAGTTGTCGAGTTGG-ATG 552
Query 618 TCAG-CTATAAAATTCTTGATGAGGCCAAGACACCTTCTTT-GTCCAAATGGGCTGAGAA 675
|| | ||||| ||||||||||| ||||| | |||||| | | |||||||||| |||
Sbjct 553 CCAATC-ATAAATTTCTTGATGAGACCAAGGCTCCTTCTCTAG-CCAAATGGGCAGAGCG 610
Query 676 TTTCTGTAATGATCCCGCTGTAAAACCTGTCATGCCCGAGACTGCAAAGCTTGCTGAATT 735
|||||| |||| |||||||| |||||| | |||||||||| | ||||||| || |||||
Sbjct 611 GTTCTGTGATGACCCCGCTGTGAAACCTATAATGCCCGAGATTACAAAGCTCGCAGAATT 670
Query 736 CGCAAAGAAGATCTTTCCTAAGCCGCAGGCCTAA 769
||||| |||| |||||||||||||||| || |||
Sbjct 671 CGCAAGGAAGCTCTTTCCTAAGCCGCAAGCATAA 704
> Ahg936976 jgi|Araly1|936976|scaffold_501167.1
Length=728
Score = 65.8 bits (35), Expect = 6e-10
Identities = 72/89 (81%), Gaps = 6/89 (7%)
Strand=Plus/Plus
Query 230 AACCCGGTTCACAAGAAGATCCCGGTTCTGCTTC-ATG-CTGATAAACCGGTGA-GTGAG 286
||||||||||||||||||||||||||||| | || | | | |||||| || | | |||
Sbjct 172 AACCCGGTTCACAAGAAGATCCCGGTTCT-CATCCACAACGG-TAAACCTGT-ATGCGAG 228
Query 287 TCCAACATCATCGTTGAGTATATCGATGA 315
||||| ||||| || || || ||||||||
Sbjct 229 TCCAATATCATAGTCGAATACATCGATGA 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5