BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10380.1
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919813 jgi|Araly1|919813|scaffold_101094.1 1417 0.0
> Ahg919813 jgi|Araly1|919813|scaffold_101094.1
Length=961
Score = 1417 bits (767), Expect = 0.0
Identities = 889/947 (94%), Gaps = 11/947 (1%)
Strand=Plus/Plus
Query 85 CTGAAAGGTCTAGC-A-AATGAGTTTGAAGCGttcttcttcttctttctttatctttctc 142
|||||| ||||||| | |||||||||||| |||||||||||||||||||| || |||||
Sbjct 3 CTGAAACGTCTAGCTAGCATGAGTTTGAAGTGTTCTTCTTCTTCTTTCTTTTTCGTTCTC 62
Query 143 ttttccttctt-cttcctctcttctcATGTCTCCTCACAAGCCTGCCAAAAAACATGCGG 201
|||| |||||| ||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 63 TTTTTCTTCTTCCTT-CTTTCTTCTCATGTCTCCTCACAAGCTTGCCAAAAAACATGCGG 121
Query 202 CCAAATACCCATCAAGTACCCGCTCGGAACCGGGTCAGGTTGCGGTGACCCACGTTTCAC 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CCAAATACCCATCAAGTACCCGCTCGGAACCGGGTCAGGTTGCGGTGACCCACGTTTCAC 181
Query 262 ACGTTACATCACGTGTGACCCTGACCAACAGACTTTGACGCTCACCACCCACACAGGCAG 321
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 182 ACGTTACATCACGTGCGACCCGGACCAACAGACTTTGACGCTCACCACCCACACAGGCTG 241
Query 322 TTACCCTATCACTTCTGTCGACTACGCCAAACAAGAGATCTACGTCACTGATCCGTCCAT 381
||||||||||| ||| |||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 242 TTACCCTATCAGTTCCGTCGACTACGCCAAGCAAGAGATCTACGTCACCGACCCGTCCAT 301
Query 382 GTCTACGTGTGCATGTACCCGACCCAGCCATGGATTCGGGTTGGATTGGGACGCTCCGTT 441
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GTCCACGTGTGCATGTACCCGACCCAGCCATGGATTCGGGTTGGATTGGGACGCTCCGTT 361
Query 442 TTCTTTCCATGACGACACCGTTTTTACGCTCCTTGACTGTTCCGTAGACGAATCCCCTGT 501
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 362 TTCTTTCCATGACGACACCGTTTTCACGCTCCTTGACTGTTCCGTAGACGAATCCCCTGT 421
Query 502 ATTCACACCGTTAAGTAACGGTAGCGGACGTGTTTCCCTCTGTGATCGTCAAAGCTCCTC 561
||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 422 TTTCACGCCGTTAAGTAACGGTAGCGGACGTGTCTCCCTCTGTGACCGTCAAAGCTCCTC 481
Query 562 CATTTGCACCTTCTTGTACTCAAATTGCAGGGCCATAAGCCTCATAAACCTCCAAGTATC 621
|||||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||||
Sbjct 482 TATTTGCACCTTCTTGTACTCCAATTGCAGGGCGATAAGTCTAATAAACCTTCAAGTATC 541
Query 622 AACGTGTTGCGTCTACGTGCCTCTAGACCTCGGACCATCGTTCGAAATGGATTTGAACAA 681
|||||| ||||||||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct 542 AACGTGCTGCGTCTACGTGCCTCTTGATCTCGGACCATCGTTCGAAATGGATCTGAACAA 601
Query 682 ACTCAAGTGCTCGTCATACTCCGGCTTCTACAACCTCGGTCCAGGCCAAGAATCCCACCC 741
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 602 ACTCAAGTGCTCGTCGTACTCGGGCTTCTACAACCTCGGTCCAGGCCAAGAATCCCACCC 661
Query 742 GGAGAATTGGAACTACGGAATCGCACTCAAGTACAAGTTCAACGTTTTTGATGAGTACCC 801
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 662 GGAGAATTGGAACTACGGAATCGCACTCAAGTACAAGTTCAACGTTTTCGATGAGTACCC 721
Query 802 TGGCGTCTGCGGTAGCTGCGAGCGTAGTAACGGTGCTTGTGGCTTCAACACACAGTCAAG 861
||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 722 TGGCGTCTGCGGTGGCTGTGAGCGTAGTAACGGTGCTTGTGGCTTTAACACTCAGACAAG 781
Query 862 CTCGTTCGTTTGTAACTGTCCCGGTGGGATTAACACGACATCGGATTGCTTCTTCCTTTA 921
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 782 CTCGTTCGTTTGTAACTGTCCCGGTGGGATCAACACGACATCGGATTGCTTCTTCCTATA 841
Query 922 TAACTCTGCTTCTATTCTTGTTCCTTGGTTCTCAAG-A-GA-A-TGGGTAATGTACCCTT 977
||||||||||||||||||||||||||| ||||||| | || | ||||||||||||||||
Sbjct 842 CAACTCTGCTTCTATTCTTGTTCCTTGGCTCTCAAGTAAGAGAATGGGTAATGTACCCTT 901
Query 978 TGTCATGGTTTGTTGTTTGGATGGTGATG-GTTCTGCGTTAAAGGAG 1023
|| |||||||||||||||||||||| ||| || |||| ||||||||
Sbjct 902 TG-CATGGTTTGTTGTTTGGATGGTTATGAGT-CTGCAATAAAGGAG 946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014360819
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5