BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10380.1 Length=1232 Score E Sequences producing significant alignments: (Bits) Value Ahg919813 jgi|Araly1|919813|scaffold_101094.1 1417 0.0 > Ahg919813 jgi|Araly1|919813|scaffold_101094.1 Length=961 Score = 1417 bits (767), Expect = 0.0 Identities = 889/947 (94%), Gaps = 11/947 (1%) Strand=Plus/Plus Query 85 CTGAAAGGTCTAGC-A-AATGAGTTTGAAGCGttcttcttcttctttctttatctttctc 142 |||||| ||||||| | |||||||||||| |||||||||||||||||||| || ||||| Sbjct 3 CTGAAACGTCTAGCTAGCATGAGTTTGAAGTGTTCTTCTTCTTCTTTCTTTTTCGTTCTC 62 Query 143 ttttccttctt-cttcctctcttctcATGTCTCCTCACAAGCCTGCCAAAAAACATGCGG 201 |||| |||||| ||| || ||||||||||||||||||||||| ||||||||||||||||| Sbjct 63 TTTTTCTTCTTCCTT-CTTTCTTCTCATGTCTCCTCACAAGCTTGCCAAAAAACATGCGG 121 Query 202 CCAAATACCCATCAAGTACCCGCTCGGAACCGGGTCAGGTTGCGGTGACCCACGTTTCAC 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 CCAAATACCCATCAAGTACCCGCTCGGAACCGGGTCAGGTTGCGGTGACCCACGTTTCAC 181 Query 262 ACGTTACATCACGTGTGACCCTGACCAACAGACTTTGACGCTCACCACCCACACAGGCAG 321 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | Sbjct 182 ACGTTACATCACGTGCGACCCGGACCAACAGACTTTGACGCTCACCACCCACACAGGCTG 241 Query 322 TTACCCTATCACTTCTGTCGACTACGCCAAACAAGAGATCTACGTCACTGATCCGTCCAT 381 ||||||||||| ||| |||||||||||||| ||||||||||||||||| || |||||||| Sbjct 242 TTACCCTATCAGTTCCGTCGACTACGCCAAGCAAGAGATCTACGTCACCGACCCGTCCAT 301 Query 382 GTCTACGTGTGCATGTACCCGACCCAGCCATGGATTCGGGTTGGATTGGGACGCTCCGTT 441 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 GTCCACGTGTGCATGTACCCGACCCAGCCATGGATTCGGGTTGGATTGGGACGCTCCGTT 361 Query 442 TTCTTTCCATGACGACACCGTTTTTACGCTCCTTGACTGTTCCGTAGACGAATCCCCTGT 501 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 362 TTCTTTCCATGACGACACCGTTTTCACGCTCCTTGACTGTTCCGTAGACGAATCCCCTGT 421 Query 502 ATTCACACCGTTAAGTAACGGTAGCGGACGTGTTTCCCTCTGTGATCGTCAAAGCTCCTC 561 ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 422 TTTCACGCCGTTAAGTAACGGTAGCGGACGTGTCTCCCTCTGTGACCGTCAAAGCTCCTC 481 Query 562 CATTTGCACCTTCTTGTACTCAAATTGCAGGGCCATAAGCCTCATAAACCTCCAAGTATC 621 |||||||||||||||||||| ||||||||||| ||||| || |||||||| |||||||| Sbjct 482 TATTTGCACCTTCTTGTACTCCAATTGCAGGGCGATAAGTCTAATAAACCTTCAAGTATC 541 Query 622 AACGTGTTGCGTCTACGTGCCTCTAGACCTCGGACCATCGTTCGAAATGGATTTGAACAA 681 |||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||||| Sbjct 542 AACGTGCTGCGTCTACGTGCCTCTTGATCTCGGACCATCGTTCGAAATGGATCTGAACAA 601 Query 682 ACTCAAGTGCTCGTCATACTCCGGCTTCTACAACCTCGGTCCAGGCCAAGAATCCCACCC 741 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 602 ACTCAAGTGCTCGTCGTACTCGGGCTTCTACAACCTCGGTCCAGGCCAAGAATCCCACCC 661 Query 742 GGAGAATTGGAACTACGGAATCGCACTCAAGTACAAGTTCAACGTTTTTGATGAGTACCC 801 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 662 GGAGAATTGGAACTACGGAATCGCACTCAAGTACAAGTTCAACGTTTTCGATGAGTACCC 721 Query 802 TGGCGTCTGCGGTAGCTGCGAGCGTAGTAACGGTGCTTGTGGCTTCAACACACAGTCAAG 861 ||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||| |||| Sbjct 722 TGGCGTCTGCGGTGGCTGTGAGCGTAGTAACGGTGCTTGTGGCTTTAACACTCAGACAAG 781 Query 862 CTCGTTCGTTTGTAACTGTCCCGGTGGGATTAACACGACATCGGATTGCTTCTTCCTTTA 921 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 782 CTCGTTCGTTTGTAACTGTCCCGGTGGGATCAACACGACATCGGATTGCTTCTTCCTATA 841 Query 922 TAACTCTGCTTCTATTCTTGTTCCTTGGTTCTCAAG-A-GA-A-TGGGTAATGTACCCTT 977 ||||||||||||||||||||||||||| ||||||| | || | |||||||||||||||| Sbjct 842 CAACTCTGCTTCTATTCTTGTTCCTTGGCTCTCAAGTAAGAGAATGGGTAATGTACCCTT 901 Query 978 TGTCATGGTTTGTTGTTTGGATGGTGATG-GTTCTGCGTTAAAGGAG 1023 || |||||||||||||||||||||| ||| || |||| |||||||| Sbjct 902 TG-CATGGTTTGTTGTTTGGATGGTTATGAGT-CTGCAATAAAGGAG 946 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46014360819 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5