BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10385.1
Length=2265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312077 jgi|Araly1|312077|fgenesh1_pm.C_scaffold_1000857 3707 0.0
> Ahg312077 jgi|Araly1|312077|fgenesh1_pm.C_scaffold_1000857
Length=2265
Score = 3707 bits (2007), Expect = 0.0
Identities = 2179/2265 (96%), Gaps = 0/2265 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGCGAGAGAAAGAGGATCAATGTCGTCTAGCATCGGCAATTCCGCTGAACTCGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGCGAGAGAAAGAGGATCAATGTCGTCTAGCATCGGCAATTCCGCTGAACTCGAA 60
Query 61 GGGAATCTGACACTTAGTGATCGTCTTAAGGTTTTCAAAGGCTCAACTTTCGATCCCGAC 120
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGGAATCTGACACTAAGTGATCGTCTTAAGGTTTTCAAAGGCTCAACTTTCGATCCCGAA 120
Query 121 GCTTATGTCACCTCCAAATGTCAACGTATGAACGAAAAGGAGACAAGGCATTTGTCTTCT 180
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTTATGTCACCTCCAAATGCCAGCGTATGAACGAAAAGGAGACAAGGCATTTGTCTTCT 180
Query 181 TACCTCGTTGAATTGAAGAAAGCTTCTGCAGAGGAGATGCGTAAGAGCGTCTACGCAAAC 240
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACCTCGTTGAACTCAAGAAAGCTTCTGCAGAGGAGATGCGTAAGAGCGTCTACGCAAAC 240
Query 241 TACGCTGCCTTTATACGAACATCTAAGGAGATTTCAGCTCTTGAAGGACAACTTCTTTCT 300
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TACGCTGCCTTTATACGGACATCTAAGGAGATTTCAGCTCTTGAAGGACAGCTTCTTTCT 300
Query 301 ATGAGAAACCTTCTCTCTGCTCAAGCAGCTCTTGTTCACGGTTTAGCTGATGGTGTTCAC 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 301 ATGAGAAACCTTCTCTCTGCTCAAGCAGCTCTTGTTCACGGCTTAGCTGATGGCGTTCAC 360
Query 361 ATTAGTTCCTTATGCGCTGATGACGCTGACGACTTAAGAGACGAAGACTTGTACGATATG 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 ATTAGTTCCTTGTGCGCTGATGACGCTGACGACTTAAGAGACGAAGACTTGTATGATATG 420
Query 421 GATAACAAACAGCTGTCGAATATTGAGAATTGGGTTGTGGAGTTTTTCGATAGACTTGAA 480
|||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 421 GATAACAAACAGTTGTCCAAAATTGAGAATTGGGTTGTGGAGTTTTTTGATAGACTTGAA 480
Query 481 GTTCTCTTAGCTGAGAAGAGAGTTGAGGAATCCATGGCTGCGTTAGAAGAAGGGCGTCGT 540
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 GTCCTCTTAGCTGAGAAGAGAGTTGAGGAGTCCATGGCTGCGTTAGAAGAAGGGCGTCGT 540
Query 541 GTGGCCGTAGAAGCACATGAGAAACGGACTCTCAGTCCCACCACTCTTCTTTCTCTGAAC 600
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 541 GTGGCCATAGAAGCACATGAGAAACGGACTCTCAGTCCCAGCACTCTTCTTTCTCTGAAC 600
Query 601 AATGCAATCAAAGAAAAGAGACAAGAGTTGGCTGATCAATTGGCAGAAGCTATTAGCCAA 660
||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 601 AATGCAATCAAAGAAAAGAGACAGGAGCTGGCTGACCAATTGGCAGAAGCTATTAGCCAA 660
Query 661 CCTTCTACAAGAGGAGGTGAGCTTAGATCAGCTGTTTTGTCTCTCAAGAAACTCGGGGAC 720
||||||||||||| ||| ||||||||| |||| || ||| ||||||||||||||||||||
Sbjct 661 CCTTCTACAAGAGCAGGCGAGCTTAGAGCAGCCGTCTTGGCTCTCAAGAAACTCGGGGAC 720
Query 721 GGTTCTCGCGCACACACCTTGCTTCTTAGGTCTTACGAGCGGAGGCTACAAGCCAACATT 780
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 GGTTCTCGCGCCCACACATTGCTTCTTAGGTCTTACGAGCGGAGGCTACAAGCTAACATT 780
Query 781 CAAAGCCTTAGAGCTTCTAACACTTCTTATGGGGTAGCATTTGCTGCTGCTCTCTCTCAA 840
|||||||| ||||||||||||||||| || |||||||||||||| |||| ||||||||
Sbjct 781 CAAAGCCTAAGAGCTTCTAACACTTCCTACGGGGTAGCATTTGCCACTGCGCTCTCTCAG 840
Query 841 CTTGTTTTCTCAACGATTGCTCAAGCTGCGAGCGACTCTCAAGCAGTTGTTGGAGAGGAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 CTTGTTTTCTCAACGATTGCTCAAGCTGCGAGCGACTCTCAAGCAGTTGTTGGGGAGGAT 900
Query 901 CCGGCCTATACATCAGAGCTTGTGACATGGGCGGTTAAACAAGCAGAGTCGTTTGCTCTT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CCGGCCTATACATCAGAGCTTGTGACATGGGCGGTTAAACAAGCAGAGTCGTTTGCTCTT 960
Query 961 TTGCTGAAAAGACATACTTTGGCTTCATCTGCTGCTGCAGGAAGCTTAAGGGTAACCGCA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 961 TTGCTGAAAAGACATACTTTGGCTTCATCTGCTGCTGCAGGAAGCTTAAGAGTAACCGCA 1020
Query 1021 GAGTGTGTCCAACTCTGCGCATCACACTGCTCTTCATTGGAGTCTCGCGGTTTAGCTCTT 1080
||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAGTGCATCCAACTCTGTGCATCCCACTGCTCTTCATTGGAGTCTCGCGGTTTAGCTCTT 1080
Query 1081 TCCCCTGTTTTGTTGAAACACTTTAGGCCGGGCGTGGAACAAGCACTGACTGGAAATCTC 1140
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1081 TCCCCTGTTTTGTTGAAACACTTTAGGCCGGGGGTGGAACAAGCATTGACTGGAAATCTC 1140
Query 1141 AAGAGAATCGAACAAAGCAGTGCGGCTTTAGCTGCTTCGGATGATTGGTCACTCTCTTAT 1200
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAGAGGATTGAACAAAGCAGTGCCGCTTTAGCTGCTTCGGATGATTGGTCACTCTCTTAT 1200
Query 1201 ACACCAACAGGATCACGCGCCTCATCAACTACTCCCACTGCACCACATCTCAAGCTTTCT 1260
|||||||||||||||| |||||||| |||||||||| |||||| |||||||||||||||
Sbjct 1201 TCACCAACAGGATCACGAGCCTCATCGACTACTCCCATTGCACCGCATCTCAAGCTTTCT 1260
Query 1261 ATAAGCGCTCAAAGATTCAATTCCATGGTTCAGGAATTTCTAGAGGATGCTGGACCGCTG 1320
|||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 1261 ATAAGCGCTCAAAGATTCAACTCCATGGTTCAGGAGTTTCTGGAGGATGCTGGACCGCTA 1320
Query 1321 GATGAAGCATTACAGTTAGACGGGATTGCACTAGACGGTGTTTTGCAAGTGTTTAACTCA 1380
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GACGAAGCATTACAGTTAGACGGGATTGCACTAGACGGTGTTTTGCAAGTGTTTAACTCG 1380
Query 1381 TACGTTGATCTCTTGATCAACGCATTGCCCGGTTCAGCTGAAAACGAAGAGAATCCAGTT 1440
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1381 TATGTTGATCTCTTGATCAACGCATTGCCTGGTTCAGCTGAAAACGAAGAGAATCCAGTT 1440
Query 1441 CATAGAATAGTTAAAGTAGCTGAAACTGAGTCCCAACAAACGGCTTTGTTAGTCAATGCG 1500
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1441 CATAGAATAGTTAAAGTAGCTGAAACTGAGTCCCAACAAACAGCTTTGTTAGTCAATGCG 1500
Query 1501 CTTCTTTTAGCAGACGAGCTAATTCCACGTTCTGCTTCAAGGATTTTGCCACAAGGTACG 1560
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct 1501 CTTCTTTTGGCAGACGAGCTAATCCCGCGTTCTGCTTCAAGGATTTTGCCACAAGGTGCG 1560
Query 1561 AGCCAATCCACTCCAAGAAGAGGTTCCTCAGATAGGCAGAACCGACCAGAGCAAAGAGAA 1620
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1561 AGCCAATCCACTCCAAGAAGAGGTTCCTCAGATAGACAGAACCGACCAGAGCAAAGAGAA 1620
Query 1621 TGGAAGAAGAAGCTTCAAAGATCAGTGGATCGACTAAGAGATAGCTTCTGCAGACAACAT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TGGAAGAAGAAGCTTCAAAGATCAGTGGATCGACTAAGAGATAGCTTCTGCAGACAACAT 1680
Query 1681 GCACTTGAACTCATCTTCACTGAAGAAGGAGAAGTCCGTCTCAGCTCTGAGATTTATATC 1740
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GCACTTGAACTTATCTTCACTGAAGAAGGAGAAGTCCGTCTCAGCTCTGAGATTTATATC 1740
Query 1741 CTCATGGACGAAACCACTGAAGAGCCTGAATGGTTCCCTTCACCAATTTTCCAGGAACTG 1800
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1741 CTCATGGACGAAACCACTGAAGAGCCTGAATGGTTTCCTTCACCAATATTCCAGGAACTG 1800
Query 1801 TTTGCGAAATTGACGAGGATAGCCATGATTGTGAGCGATATGTTTGTGGGGAGAGAGAGA 1860
||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||
Sbjct 1801 TTTGCGAAATTGACGAGAATAGCGATGATTGTGAGCGACATGTTTGTGGGAAGAGAAAGA 1860
Query 1861 TTCGCGACGATATTGCTGATGAGACTGACGGAGACAGTGATTCTTTGGATATCTGATGAT 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 TTCGCGACGATATTGCTGATGAGACTGACGGAGACAGTGATTCTTTGGATATCTGATGAT 1920
Query 1921 CAGAGTTTCTGGGAAGAGATGGAGACAGGAGATAAACCATTAGGTCCACTTGGTCTTCAA 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 CAGAGTTTCTGGGAAGAGATGGAGACAGGAGATAAACCATTAGGTCCACTTGGTCTTCAA 1980
Query 1981 CAGTTTTACCTGGACATGGAGTTCGTGATGATCTTTGCCTCGCAAGGAAGGTACTTGTCG 2040
|||||||| || ||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 1981 CAGTTTTATCTTGACATGGAGTTTGTGATGATATTTGCCTCGCAAGGAAGGTATTTGTCG 2040
Query 2041 AGAAACCTTCATCAAGTGATCAAGAACATAATAGCTCGAGCCGTCGAAGCAGTTTCAGCC 2100
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2041 AGAAACCTTCATCAAGTGATCAAGAACATTATAGCTCGAGCCGTGGAAGCAGTTTCAGCA 2100
Query 2101 ACTGGACTCGACCCTTATAGTACGTTGCCGGAGGAAGAGTGGTTTGCGGAAGTAGCTCAG 2160
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2101 ACTGGACTCGACCCTTATAGGACGTTGCCGGAGGAAGAGTGGTTTGCGGAAGTAGCTCAG 2160
Query 2161 ATAGCGATAAAGATGTTGATGGGAAAAGGCAACTTCGGTGGCCACGGAGAGCGTGACGTT 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 ATAGCGATAAAGATGTTGATGGGAAAAGGCAACTTCGGTGGCCACGGAGAGCGTGACGTT 2220
Query 2221 ACTAGCCCCTCTGTTTCCTCTGCTAAATCTTACACCAGTAATTGA 2265
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 ACTAGCCCCTCTGTTTCCTCTGCTAAATCTTACACCAGTAATTGA 2265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85284058555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5