BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10400.1
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471154 jgi|Araly1|471154|fgenesh2_kg.1__1108__AT1G10400.1 2261 0.0
> Ahg471154 jgi|Araly1|471154|fgenesh2_kg.1__1108__AT1G10400.1
Length=1410
Score = 2261 bits (1224), Expect = 0.0
Identities = 1350/1412 (96%), Gaps = 4/1412 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTTAGAAAAAGTTCACGTGGTTTTGTTCCCATACTTGTCCAAAGGGCACATGATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTTAGAAAAAGTTCACGTGGTTTTGTTCCCATACTTGTCCAAAGGGCACATGATT 60
Query 61 CCTATGCTCCAATTAGCTCGTCTCCTCTTATCCCACTCCTTCGCCGGAGACATCTCCGTC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CCTATGCTCCAATTAGCTCGTCTCCTCTTATCCCACTCCTTCGCCGGAGACATCTCTGTC 120
Query 121 ACCGTCTTCACCACTCCTTTGAACCGTCCTTTCATCGTTGACTCACTCTCCGGCACCAAA 180
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 121 ACCGTCTTCACCACTCCTTTGAACCGTCCTTTCGTTGTTGACTCACTCTCCGGCACCAAC 180
Query 181 GCGACCATCGTCGACGTACCTTTCCCTGATAACGTCCCGGAGATCCCACCCGGCGTCGAG 240
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 181 GCGACCATCGTCGACGTCCCTTTCCCCGATAAAGTCCCGGAGATCCCACCCGGCGTCGAG 240
Query 241 TGCACTGACAAACTCCCTGCTTTGTCGTCCTCCCTCTTCGTTCCTTTCACAAGAGCCACC 300
||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 241 TGCACCGACAAACTCCCTGCTTTGTCGTCCACCCTCTTCGTTCCTTTCACTAGAGCCACC 300
Query 301 AAGTCAATGCAGGCAGACTTTGAGCGAGAGCTCATGTCACTGCCACGTGTCAGTTTCATG 360
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 301 AAGTCAATGCAGGCAGACTTTGAGCGAGAACTCATGTTACTGCCACGTGTCAGTTTCATG 360
Query 361 GTCTCAGACGGTTTCTTGTGGTGGACGCAAGAGTCAGCTCGAAAGCTAGGGTTTCCTCGG 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 GTCTCAGACGGTTTCTTGTGGTGGACGCTAGAGTCAGCTCGAAAGCTAGGGTTTCCTCGG 420
Query 421 CTTGTTTTCTTTGGTATGAATTGCGCTTCCACCGTTATATGTGACAGTGTTTTTCAAAAC 480
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATTGTTTTCTTGGGTATGAACTGCGCTTCCACCGTTATATGTGACAGTGTTTTTCAAAAC 480
Query 481 CAGCTTCTATCTAATGTTAAGTCCGAGACGGAGCCAGTTTCTGTACCGGAGTTTCCGTGG 540
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 481 CAGCTTCTATCTAATGTTAAGTCCGAGACGGAGCCCGTTTCTGTACCCGAGTTTCCGTGG 540
Query 541 ATTAAGGTTAGGAAATGTGATTTCGTTAAAGATATGTTTGATCCAAAAACCACCACAGAT 600
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 541 ATTAAGGTTAGGAAATGTGATTTCGTTAAAGATATGTTTGATTCAAAATCCACCACAGAT 600
Query 601 CCTGGATTCAAGCTTATCCTAGATCAAGTCACGTCTATGAATCAAAGCCAAGGTATCATA 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 CCTGGATTCAAGCTTATCCTAGATCAAGTCACGTCTATGAATCAAAGTCAAGGTATCATA 660
Query 661 TTCAATACATTTGACGACCTTGAACCCGTGTTTATTGATTTCTACAAGCGTAAACGCAAA 720
||||| || || ||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 661 TTCAACACGTTCGACGACCTTGAACCCGTGTTTATAGATTTCTACAAGCGTAATCGCGAG 720
Query 721 CTCAAGCTTTGGGCAGTTGGACCGCTTTGTTACGTAAATAACTTCTTGGATG-ATGAAGT 779
||||||| ||| || ||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 721 CTCAAGCCCTGGACACTTGGACCGCTTTGTTGTGTAAATAACTTCTTGGA-GTATGAAGT 779
Query 780 AGAAGAGAAGGTCAAACCTAGTTGGATGAAATGGCTAGATGAAAAGCGAGACAAGGGATG 839
|||||||| ||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 780 AGAAGAGATGGTCAAACCTAGTTGGATGAAATGGCTTGATAAAAAGAGAGACAAGGGATG 839
Query 840 CAATGTTCTGTATGTGGCTTTCGGGTCACAAGCCGAGATCTCGA-GAGAACAACTAGAGG 898
||||||||| || ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 840 CAATGTTCTCTACGTGGCTTTCGGGTCACAAGCCGAGATCTCGAGGA-AACAACTAGAGG 898
Query 899 AGATTGCGTTAGGGTTGGAAGAATCGAAGGTGAACTTCTTGTGGGTGGTCAAAGGAAATG 958
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 899 AGATTGCGTTAGGGTTGGAAGAATCGAAGGTGAGCTTCTTGTGGGTGGTCAAAGGAAATG 958
Query 959 AAATAGGAAAAGGGTTTGAAGAGAGAGTGGGAGAAAGAGGAATGATGGTGAGAGATGAAT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAATAGGAAAAGGGTTTGAAGAGAGAGTGGGAGAAAGAGGAATGATGGTGAGAGATGAAT 1018
Query 1019 GGGTTGATCAGAGGAAGATATTAGAGCACGAGAGTGTTAGAGGGTTCTTGAGCCATTGTG 1078
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1019 GGGTTGATCAGAGGAAGATATTAGAGCACGAGACTGTTAGAGGGTTCTTGAGTCATTGTG 1078
Query 1079 GGTGGAATTCTCTGACGGAGAGCATTTGCTCGGAGGTTCCAATCTTGGCGTTTCCTTTAG 1138
||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1079 GGTGGAATTCTATGATGGAGAGCATTTGCTCAGAGGTTCCAATCTTGGCGTTTCCTTTAG 1138
Query 1139 CAGCGGAGCAACCTCTGAATGCGATTTTGGTGGTGGAAGAGCTGAGAGTGGCGGAGAGAG 1198
| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1139 CGGCAGAGCAACCTCTGAATGCGATATTGGTGGTGGAAGAGCTGAGAGTGGCGGAAAGAG 1198
Query 1199 TGGTGGCGGCGAGTGAAGGGGTTGTgagaagagaagagattgcagagaaagtgaaggagt 1258
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGGTGGCGGCGAGTGAAGGACTTGTGAGAAGAGAAGAGATTGCAGAGAAAGTGAAGGAGT 1258
Query 1259 tgatggagggagagaaagggaaagagCTGAGGAGGAATGTCGAGGCATATGGTAAGATGG 1318
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1259 TGATGGAGGGAGAGAAAGGGAAAGAGCTAAGGAGGAATGTCGAGGCATATGGTAAGATGG 1318
Query 1319 CGAAGAAGGCTTTGGAGGAAGGTATTGGTTCGTCTAGGAAGAATTTAGACAACCTTATCA 1378
|||||||||||||| |||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 1319 CGAAGAAGGCTTTGAAGGATGGAATTGGTTCGTCTTGGAAGAATTTAGACAACCTTATCA 1378
Query 1379 ACGAGTTTTGTAACAATGGAACATGATGATGT 1410
|| |||||||||||||||||||||||||||||
Sbjct 1379 ACCAGTTTTGTAACAATGGAACATGATGATGT 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53135891775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5