BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10417.1
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471156 jgi|Araly1|471156|fgenesh2_kg.1__1110__AT1G10417.1 767 0.0
Ahg471157 jgi|Araly1|471157|fgenesh2_kg.1__1111__AT1G10420.1 291 1e-77
> Ahg471156 jgi|Araly1|471156|fgenesh2_kg.1__1110__AT1G10417.1
Length=762
Score = 767 bits (415), Expect = 0.0
Identities = 438/449 (98%), Gaps = 2/449 (0%)
Strand=Plus/Plus
Query 823 CTTCAGAAAACTTTGCAGGTCAAAGATTTAGCTGTAGAGAACTTAATTTCTGAAAAAGAG 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 CTTCAGAAAACTTTGCAGGTCAAAGATTTAGCTGTAGAGAACTTAATTTCTGAAAAAGAG 327
Query 883 GCATTGTATTCTGAAATGAAGGGTTTGGAGATGATTTTACAGCGGATTCAGGAGTCTGTA 942
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 328 GCATTGTATTCTGAAGTGAAGGGTTTAGAGATGATTTTACAGCGGATTCAGGAGTCTGTA 387
Query 943 TCCCTTATGACTGAAGAGGATAGAAAGGTGTTTACATCAATACTGACATTCGAACAAGGT 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 TCCCTTATGACTGAAGAGGATAGAAAGGTGTTTACATCAATACTGACATTCGAACAAGGT 447
Query 1003 TCCGATGAGAGAAACAAAAGATCCAGGCACAATGACACAGTTGACAAAATGGAGGAACTT 1062
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 TCCAATGAGAAAAACAAAAGATCCAGGCACAATGACACAGTTGACAAAATGGAGGAACTT 507
Query 1063 CTATATGTAGCTCCTGTTATGCATTCTCAAGAAAACTCAGTAAAAGTTATTCCATCAGCG 1122
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 CTATGTGAAGCTCCTGTTATGCATTCTCAAGAAAACTCAGTAAAAGTTATTCCATCAGCG 567
Query 1123 TCTCCAAGGTGTCAGCACCAAAAAACAGACTGCAGA-TCGATACAAGATGATGATCATCA 1181
||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 568 TCTCCAAGGTGTCAGCACCAAAACACAGACTGCAGAAT-GATACAAGATGATGATCATCA 626
Query 1182 ACTGGATTCGGCTGAGTACCTGCAGCATAACACTGTCAGTGGCCATTGGCAGAGTACTAA 1241
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 627 ACTGGATTCGGCTGAGTACCTGCTGCATAACACTGTCAGTGGCCATTGGCAGAGTACTAA 686
Query 1242 TAACCACAACCACTTTGAGCTTGAGGCAA 1270
||||||||||||||||||| |||||||||
Sbjct 687 TAACCACAACCACTTTGAGATTGAGGCAA 715
Score = 267 bits (144), Expect = 3e-70
Identities = 164/174 (94%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 649 ATGGACCATGTCTCTACTTATGAAAAAGTGTTTATAGAGAACATCAGAGCGTTAGAAGAG 708
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGACCATGTCTCTACATATGAAAAAGTGTTTATAGAGAACATCAGAGCTTTAGAAGAG 60
Query 709 AAACTTAAATGCCATGAAACAGAACTGCAGAGCAAGGATAATATAATATCAGAGCTCTCC 768
|||||| ||| |||||||||||| ||||||||||||| ||||||||||||||||| ||
Sbjct 61 AAACTTGAATATCATGAAACAGAATTGCAGAGCAAGGAGAATATAATATCAGAGCTTTCG 120
Query 769 GCTCAGCTGGAATCAGAAAAGAGTAAAAATGAACATCAACATCAAGTCGAAGAG 822
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 GCTCAGCTGGAATCAGAAAAGATTAAAAATGAACATCAACATCAAGTCGAAGAG 174
> Ahg471157 jgi|Araly1|471157|fgenesh2_kg.1__1111__AT1G10420.1
Length=354
Score = 291 bits (157), Expect = 1e-77
Identities = 188/201 (94%), Gaps = 9/201 (4%)
Strand=Plus/Plus
Query 1 ATGGAGATGCTCAAGTTGTCAAAATTCAAATTGCAGCTTCAGTCAATGATCGGAGAAGTG 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGCTGCTCAAGTTGTCAAAATTCAAATTGCAGCTTCAGTCAATGATCGGAGAAGTG 60
Query 61 CGAGATCTGCGTGTAAGGAGAAAGAGGTTTCTATACATCTATGGATTGTGTAtcttcttc 120
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 CGAGATCTGCGTGTAAGAAGAATGAGGTTTCTATACATCTATGGATTGTGTATCTTCTTC 120
Query 121 gctccaccagtttctctcttcttcttcttcgtcttcttcCACTTTACTACCGGCGTTTTT 180
||||||||| ||| ||||| |||| ||| | |||| | ||||||||||||||||||||
Sbjct 121 GCTCCACCA-TTT-TCTCT-CTTCGTCT-C--CTTC--C-ACTTTACTACCGGCGTTTTT 171
Query 181 GCAGGAAAGGGAGCGATCAGT 201
|||||||||||||||||||||
Sbjct 172 GCAGGAAAGGGAGCGATCAGT 192
Score = 172 bits (93), Expect = 6e-42
Identities = 114/124 (92%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 221 GCGAATCAGGTTCTTCGATCAATAAACAGAAGCAAACGGAGGAGGACTGCATCAGGAAAG 280
||| |||| ||||||| ||||||||||||||||| ||||||||||| | ||| |||||||
Sbjct 184 GCG-ATCA-GTTCTTCAATCAATAAACAGAAGCAGACGGAGGAGGAATACATGAGGAAAG 241
Query 281 TGCAGGAGCTTCAAGCTGATTTAGCTTCTTCTAGAGAAACACAGGAGGCACTCGAGAGAA 340
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 242 TGCATGAGCTTCAAGCTGAGTTAGCTTCTTCTAGAGAAACACAGGAGGCACTCGAGAGGA 301
Query 341 AGGT 344
||||
Sbjct 302 AGGT 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61515745675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5