BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10419.1
Length=395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910770 jgi|Araly1|910770|Al_scaffold_0001_1024 383 6e-106
> Ahg910770 jgi|Araly1|910770|Al_scaffold_0001_1024
Length=1116
Score = 383 bits (207), Expect = 6e-106
Identities = 251/272 (92%), Gaps = 4/272 (1%)
Strand=Plus/Plus
Query 4 ATAGTTCAAGAGATTCACATGCATAAGGCGGATAGTAGCAATGCAGATCAACTGGAGATA 63
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 847 ATAGTTCAAGAGATTCACAGGCATGAGGCGGATAGTAGCAATGCAGATCAACTGGAGATA 906
Query 64 ACGAATGAGCTCACACCAGAAGAAGCGAGAAGCTATGCGATATCCCAATTGCCTCGGGAA 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GCGAATGAGCTCACACCAGAAGAAGCGAGAAGCTATGCGATATCCCAATTGCCTCGGGAA 966
Query 124 ATCTCAAAGCACATTCGTTTTGCCTTCGACTCACCTGGTTATGAACCGTTCTTTGCTTCT 183
||||||||||||| | |||||||||| ||||||||||| ||||| |||||||||| |||
Sbjct 967 ATCTCAAAGCACACTGGTTTTGCCTTTGACTCACCTGGCTATGAGTCGTTCTTTGCATCT 1026
Query 184 CAACTGGG-TATATACGCACCACAGAAAGCGTGGGATGTGGCTAGAAGAGCCAGCATGAG 242
||| |||| | | ||||| |||||||||| ||||||||||||||| ||||| ||||||||
Sbjct 1027 CAATTGGGGTTT-TACGCTCCACAGAAAGTGTGGGATGTGGCTAGGAGAGCTAGCATGAG 1085
Query 243 GTCACGAGCC-AAAGCATCAAAGAAGAATTGA 273
|||||| ||| |||||| ||||||||||||||
Sbjct 1086 GTCACG-GCCCAAAGCACCAAAGAAGAATTGA 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14155723519
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5