BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10419.1 Length=395 Score E Sequences producing significant alignments: (Bits) Value Ahg910770 jgi|Araly1|910770|Al_scaffold_0001_1024 383 6e-106 > Ahg910770 jgi|Araly1|910770|Al_scaffold_0001_1024 Length=1116 Score = 383 bits (207), Expect = 6e-106 Identities = 251/272 (92%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 4 ATAGTTCAAGAGATTCACATGCATAAGGCGGATAGTAGCAATGCAGATCAACTGGAGATA 63 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 847 ATAGTTCAAGAGATTCACAGGCATGAGGCGGATAGTAGCAATGCAGATCAACTGGAGATA 906 Query 64 ACGAATGAGCTCACACCAGAAGAAGCGAGAAGCTATGCGATATCCCAATTGCCTCGGGAA 123 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 907 GCGAATGAGCTCACACCAGAAGAAGCGAGAAGCTATGCGATATCCCAATTGCCTCGGGAA 966 Query 124 ATCTCAAAGCACATTCGTTTTGCCTTCGACTCACCTGGTTATGAACCGTTCTTTGCTTCT 183 ||||||||||||| | |||||||||| ||||||||||| ||||| |||||||||| ||| Sbjct 967 ATCTCAAAGCACACTGGTTTTGCCTTTGACTCACCTGGCTATGAGTCGTTCTTTGCATCT 1026 Query 184 CAACTGGG-TATATACGCACCACAGAAAGCGTGGGATGTGGCTAGAAGAGCCAGCATGAG 242 ||| |||| | | ||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 1027 CAATTGGGGTTT-TACGCTCCACAGAAAGTGTGGGATGTGGCTAGGAGAGCTAGCATGAG 1085 Query 243 GTCACGAGCC-AAAGCATCAAAGAAGAATTGA 273 |||||| ||| |||||| |||||||||||||| Sbjct 1086 GTCACG-GCCCAAAGCACCAAAGAAGAATTGA 1116 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14155723519 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5