BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10430.1
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919825 jgi|Araly1|919825|scaffold_101106.1 1644 0.0
Ahg475327 jgi|Araly1|475327|fgenesh2_kg.2__457__AT1G59830.1 1103 0.0
> Ahg919825 jgi|Araly1|919825|scaffold_101106.1
Length=963
Score = 1644 bits (890), Expect = 0.0
Identities = 934/956 (98%), Gaps = 0/956 (0%)
Strand=Plus/Plus
Query 176 GATCGGTGGTGGCTTTTCAAGATGCCGTCGAACGGAGATCTGGACCGTCAGATCGAGCAG 235
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATCGGCGGTGGCTTTTCAAGATGCCGTCGAACGGAGATCTGGACCGTCAGATCGAGCAG 60
Query 236 CTGATGGAGTGTAAACCGTTATCGGAGGCGGATGTGAGGACGCTTTGCGATCAAGCGAGA 295
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CTGATGGAGTGTAAACCGTTATCAGAGGCGGATGTGAGGACGCTTTGCGATCAAGCGAGA 120
Query 296 GCGATCCTTGTCGAGGAATATAATGTTCAGCCGGTGAAGTGTCCTGTTACCGTTTGCGGC 355
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GCGATCCTTGTCGAGGAATATAATGTTCAGCCGGTGAAGTGCCCTGTTACCGTTTGCGGC 180
Query 356 GATATTCACGGCCAGTTTTATGACCTTATTGAGCTCTTTCGTATCGGTGGCAACGCTCCT 415
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GATATTCACGGCCAGTTTTATGACCTTATTGAGCTCTTTCGAATCGGTGGCAACGCTCCT 240
Query 416 GATACTAACTACCTCTTCATGGGAGACTATGTAGATCGTGGCTACTATTCAGTAGAGACA 475
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 241 GATACTAACTACCTCTTCATGGGAGACTATGTAGACCGTGGATACTATTCAGTAGAGACA 300
Query 476 GTTTCTCTATTGGTGGCACTAAAAGTGCGATACAGGGATAGACTTACAATCTTACGAGGG 535
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 301 GTTTCTCTATTGGTGGCACTGAAAGTGCGATACAGGGATAGAATTACAATCTTACGAGGG 360
Query 536 AATCACGAGAGTCGGCAGATTACTCAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAG 595
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AATCACGAGAGTCGTCAGATTACTCAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAG 420
Query 596 TACGGAAATGCTAACGTCTGGAAGTATTTTACAGACCTTTTCGATTATCTTCCTCTTACC 655
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 TACGGAAATGCAAATGTCTGGAAGTATTTTACAGATCTTTTCGATTATCTTCCTCTTACC 480
Query 656 GCCCTCATAGAGAGTCAGGTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCCCTCATAGAGAGTCAGGTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACT 540
Query 716 CTTGATAATATCCGAAGCTTGGATCGGATACAGGAGGTTCCACACGAAGGACCTATGTGT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTGATAATATCCGAAGCTTGGATCGGATACAGGAGGTTCCACACGAAGGACCTATGTGT 600
Query 776 GATTTATTATGGTCTGATCCTGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCT 835
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 GATTTATTATGGTCTGATCCCGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCT 660
Query 836 GGTTATACATTTGGACAGGATATCGCAGCTCAATTTAATCACAACAATGGACTAAGTCTC 895
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 GGTTATACATTTGGACAGGATATCGCAGCTCAATTTAATCACAACAATGGACTCAGTCTC 720
Query 896 ATATCAAGAGCGCATCAACTTGTCATGGAAGGTTTTAACTGGTGTCAGGATAAGAATGTG 955
|| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 721 ATTTCAAGAGCGCATCAACTAGTCATGGAAGGTTTCAACTGGTGTCAGGATAAGAATGTG 780
Query 956 GTGACTGTGTTTAGTGCACCAAACTATTGCTACCGGTGTGGAAACATGGCTGCCATTCTA 1015
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 781 GTGACTGTGTTTAGTGCACCAAACTATTGCTACCGATGTGGAAACATGGCAGCGATTCTA 840
Query 1016 GAGATAGGAGAGAACATGGAGCAAAACTTCCTCCAGTTCGATCCAGCTCCTCGACAAGTT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAGATAGGAGAGAACATGGAGCAAAACTTCCTCCAGTTCGATCCAGCTCCTCGACAAGTT 900
Query 1076 GAACCTGATACTACTCGGAAGACCCCTGATTATTTTTTGTGATTTCTCTGtttttt 1131
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 901 GAACCTGATACTACCCGTAAGACCCCTGATTATTTTTTGTGATTTCTCTGTTTTTT 956
> Ahg475327 jgi|Araly1|475327|fgenesh2_kg.2__457__AT1G59830.1
Length=1289
Score = 1103 bits (597), Expect = 0.0
Identities = 820/930 (88%), Gaps = 6/930 (1%)
Strand=Plus/Plus
Query 195 AGATGCCGTCGAACGGAGATCTGGACCGTCAGATCGAGCAGCTGATGGAGTGTAAACCGT 254
|||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 182 AGATGCCGTCAAACGGAGATCTCGACCGTCAGATCGAACAGCTTATGGAGTGTAAACCGT 241
Query 255 TATCG-GAGGCGGATGTGAGGA-CGCTTTGCGATCAAGCGAGAGCGATCCTTGTCGAGGA 312
| | || || || |||| || | || ||||||||||| | |||||| || || |||||
Sbjct 242 T-GGGTGAAGCAGACGTGAAGATC-CTCTGCGATCAAGCCAAAGCGATTCTCGTTGAGGA 299
Query 313 ATATAATGTTCAGCCGGTGAAGTGTCCTGTTACCGTTTGCGGCGATATTCACGGCCAGTT 372
|||||||||||| ||||| |||||||| ||||| || ||||||||||| || || |||||
Sbjct 300 ATATAATGTTCAACCGGTTAAGTGTCCGGTTACGGTATGCGGCGATATCCATGGACAGTT 359
Query 373 TTATGACCTTATTGAGCTCTTTCGTATCGGTGGCAACGCTCCTGATACTAACTACCTCTT 432
||||||||| |||||||| |||||||| ||||| || |||||||||||||| ||||||||
Sbjct 360 TTATGACCTAATTGAGCTTTTTCGTATTGGTGGTAATGCTCCTGATACTAATTACCTCTT 419
Query 433 CATGGGAGACTATGTAGATCGTGGCTACTATTCAGTAGAGACAGTTTCTCTATTGGTGGC 492
|||||| || ||||||||||||||||||||||| ||||| ||||| ||| ||||||||||
Sbjct 420 CATGGGTGATTATGTAGATCGTGGCTACTATTCTGTAGAAACAGTCTCTTTATTGGTGGC 479
Query 493 ACTAAAAGTGCGATACAGGGATAGACTTACAATCTTACGAGGGAATCACGAGAGTCGGCA 552
||| || ||||| |||||||| |||||||| ||| | ||||||||||| |||||||| ||
Sbjct 480 ACTGAAGGTGCGTTACAGGGACAGACTTACGATCCTGCGAGGGAATCATGAGAGTCGTCA 539
Query 553 GATTACTCAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAGTACGGAAATGCTAACGT 612
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 540 GATTACACAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAATACGGAAATGCAAATGT 599
Query 613 CTGGAAGTATTTTACAGACCTTTTCGATTATCTTCCTCTTACCGCCCTCATAGAGAGTCA 672
|||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 600 GTGGAAGTATTTTACGGACCTTTTCGATTATCTTCCTCTTACAGCACTCATAGAGAGTCA 659
Query 673 GGTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAG 732
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 660 GGTTTTCTGTTTGCATGGAGGCCTTTCACCTTCTCTGGATACCCTTGACAATATCCGAAG 719
Query 733 CTTGGATCGGATACAGGAGGTTCCACACGAAGGACCTATGTGTGATTTATTATGGTCTGA 792
||||||||| ||||| |||||||||||||||||||| ||||| ||| || | ||||||||
Sbjct 720 CTTGGATCGAATACAAGAGGTTCCACACGAAGGACCAATGTGCGATCTACTCTGGTCTGA 779
Query 793 TCCTGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCTGGTTATACATTTGGACA 852
||| |||||||| |||||||||||||||||||| || ||||||||||| || ||||||||
Sbjct 780 TCCAGATGATCGTTGTGGATGGGGAATATCTCCCCGTGGTGCTGGTTACACGTTTGGACA 839
Query 853 GGATATCGC-AGCTCAATTTAATCACAACAATGGACTAAGTCTCATATCAAGAGCGCATC 911
||| || || | |||| |||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 840 GGACATTGCTA-CTCAGTTTAATCATAACAATGGACTGAGTCTGATATCAAGAGCGCATC 898
Query 912 AACTTGTCATGGAAGGTTTTAACTGGTGTCAGGATAAGAATGTGGTGACTGTGTTTAGTG 971
||||||| |||||||| | ||| ||||||||||| ||||| || ||||| ||||||||||
Sbjct 899 AACTTGTAATGGAAGGCTATAATTGGTGTCAGGAAAAGAACGTAGTGACAGTGTTTAGTG 958
Query 972 CACCAAACTATTGCTACCGGTGTGGAAACATGGCTGCCATTCTAGAGATAGGAGAGAACA 1031
|||||||||| || ||| | |||||||||||||| || ||||| ||||| ||||| || |
Sbjct 959 CACCAAACTACTGTTACAGATGTGGAAACATGGCAGCAATTCTTGAGATTGGAGAAAAGA 1018
Query 1032 TGGAGCAAAACTTCCTCCAGTTCGATCCAGCTCCTCGACAAGTTGAACCTGATACTACTC 1091
|||| || |||||||| |||||||||||||| ||| |||| || ||||| ||||| || |
Sbjct 1019 TGGAACAGAACTTCCTTCAGTTCGATCCAGCACCTAGACAGGTCGAACCCGATACCACCC 1078
Query 1092 GGAAGACCCCTGATTATTTTTTGTGATTTC 1121
| ||||||||||||||||||||||||||||
Sbjct 1079 GCAAGACCCCTGATTATTTTTTGTGATTTC 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284127523
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5