BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G10455.1

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919827 jgi|Araly1|919827|scaffold_101108.1                        521    1e-147


> Ahg919827 jgi|Araly1|919827|scaffold_101108.1
Length=481

 Score =  521 bits (282),  Expect = 1e-147
 Identities = 406/463 (88%), Gaps = 19/463 (4%)
 Strand=Plus/Plus

Query  1    ATGGCACAA-AATAA-GAATCTCAATCTGGAATTGAGTCTAAGCCAATATGTAGAAGATG  58
            |||||| || ||||| | || |||||||||| ||||||||||||||||||||||||||||
Sbjct  21   ATGGCA-AAGAATAACG-ATATCAATCTGGATTTGAGTCTAAGCCAATATGTAGAAGATG  78

Query  59   ATCCTTGGGTTTTAAAGAAGAAGCTAAGTGACTCTGATCTTTACTATAGCGCTCAACTCT  118
            ||||||||||| ||| |||||||||||||||||||||||||| ||| || ||||| ||||
Sbjct  79   ATCCTTGGGTTCTAACGAAGAAGCTAAGTGACTCTGATCTTTGCTACAGGGCTCAGCTCT  138

Query  119  ATTTACCGAAACAAGAGATGGAACACTTTGTACTTCCGGAGATGGATCATGACCTTGTCC  178
            ||||||| ||||||||||||||||| ||| ||||||||||||||||  |||| |||||||
Sbjct  139  ATTTACCAAAACAAGAGATGGAACAATTTATACTTCCGGAGATGGAAAATGATCTTGTCC  198

Query  179  GAAAATTGGGAGCTGGCGTTGAGGTCAAAGTCAGAGATGTTGACAGTGTT-G--ACGATT  235
            | ||||||||||||||||||||| ||||| |||||||| |||||| |||| |  ||||||
Sbjct  199  GGAAATTGGGAGCTGGCGTTGAGATCAAACTCAGAGATATTGACAATGTTAGCGACGATT  258

Query  236  TTTACACAGTAAGACTTAAAGTACGCAACGGCCAGTATTATCTCGGAAAAGGATGGGGCC  295
             |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct  259  CTTACACCGTAAGACTTAAAGTACGCAACGGCCAGTATTATCTCGAAAAAGGATGGCGCC  318

Query  296  TCATCAAAAATGCCAAG-GTTTTAAACACAGGAGATCATATTGGACTCTTTTGGGATAAG  354
            |||| |||||||  ||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct  319  TCATAAAAAATGATAAGTGTTTAAAA-ACAGGAGATCATATTGGACTCTTTTGGGATAAG  377

Query  355  TTGACAAGAGAAGTCAAGTTCAAGCATTTCAAATCTCAATCAATAACAATGCATCGCGAA  414
            |||||| ||||| ||||||||||||||| | ||||  |  ||||  |    ||||| |||
Sbjct  378  TTGACAGGAGAATTCAAGTTCAAGCATTCCGAATC--A--CAAT--C----CATCGTGAA  427

Query  415  GCGGGTACTACTTCGACACAGAAAAACGTATTACAGAAGAAAT  457
            |||||||||| |||||||||||| |||  |||| || ||||||
Sbjct  428  GCGGGTACTAATTCGACACAGAAGAACAAATTAAAGGAGAAAT  470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16597681215


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5